genome.fa.s4262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004262.1 Hibiscus syriacus cultivar Beakdansim tig00009337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73508

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303--341	19	2.0	20	85	5	53	43	0	5	51	1.24
883--919	18	2.1	18	89	0	56	62	0	2	35	1.10
5644--5672	2	14.5	2	100	0	58	51	0	0	48	1.00
9217--9247	15	2.1	15	93	0	53	45	0	0	54	0.99
12899--12968	20	3.6	19	79	9	70	38	8	18	34	1.81
13168--13205	20	1.9	20	94	0	67	44	15	0	39	1.47
14978--15026	19	2.4	21	86	6	66	32	12	4	51	1.58
15864--15915	21	2.5	21	93	0	86	26	19	17	36	1.94
16229--16266	20	1.9	20	94	0	67	44	7	13	34	1.72
16517--16562	20	2.2	20	92	3	74	47	10	2	39	1.51
20485--20559	30	2.5	30	78	10	80	54	8	13	24	1.65
27226--27288	30	2.1	30	96	0	117	7	19	44	28	1.78
29571--29615	17	2.6	17	100	0	90	55	0	11	33	1.35
32433--32467	15	2.5	15	90	9	56	65	0	0	34	0.93
39440--39479	21	1.9	21	89	0	62	10	25	40	25	1.86
46767--46793	13	2.1	13	100	0	54	44	7	7	40	1.60
47364--47389	13	2.0	13	100	0	52	46	0	7	46	1.31
51404--51530	46	2.8	45	89	3	182	27	11	21	39	1.88
55074--55122	23	2.1	23	96	0	89	46	4	24	24	1.69
59392--59547	31	5.0	31	92	4	253	19	19	23	37	1.94
63756--63808	15	3.2	17	82	17	67	71	0	18	9	1.12
65220--65326	24	4.5	24	75	0	106	47	16	14	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65220--65328	48	2.3	48	78	0	128	47	16	15	20	1.82
67785--67822	7	5.4	7	100	0	76	26	28	31	13	1.93
67814--67842	13	2.2	13	100	0	58	13	20	48	17	1.81
67820--67892	18	4.4	18	68	28	72	13	20	49	16	1.79
69393--69855	55	8.6	54	83	9	486	29	15	23	31	1.96
69383--69861	162	3.0	160	81	10	527	29	15	23	31	1.95
69447--69855	217	1.9	216	84	8	553	29	16	22	31	1.96
69393--69914	162	3.2	160	79	12	511	28	16	23	31	1.96

Tables:   1

The End!