genome.fa.s4263.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004263.1 Hibiscus syriacus cultivar Beakdansim tig00009339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116794

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6252--6285	16	2.1	17	94	5	61	67	5	0	26	1.13
8563--8611	19	2.7	17	84	9	53	26	20	28	24	1.99
8582--8703	45	2.7	46	80	10	126	27	18	23	29	1.98
17191--17400	65	3.2	64	78	12	223	26	19	24	30	1.98
18682--18744	30	2.1	31	87	3	92	53	12	9	23	1.67
19112--19189	22	3.5	20	73	21	66	43	3	1	51	1.28
19116--19215	25	4.1	24	79	16	107	45	4	2	49	1.32
19116--19207	47	1.9	48	91	2	150	45	3	1	50	1.25
19547--19721	64	2.7	63	82	7	212	30	21	16	32	1.95
28245--28399	64	2.4	63	92	5	251	29	22	18	29	1.97
28245--28419	64	2.7	62	86	9	237	28	23	18	29	1.98
29487--29682	100	2.0	100	93	2	340	32	23	16	28	1.96
30087--30111	12	2.1	12	100	0	50	68	16	8	8	1.38
34706--34747	20	2.0	21	82	13	52	47	4	0	47	1.23
39719--39749	4	7.8	4	100	0	62	51	0	25	22	1.48
40043--42315	8	284.4	8	96	0	3452	49	5	24	19	1.68
43671--44107	222	2.0	220	89	4	673	30	12	16	40	1.86
44439--44622	92	2.0	92	95	0	332	41	19	9	30	1.82
45313--45349	18	2.1	18	100	0	74	35	10	5	48	1.61
46770--46807	16	2.4	16	83	12	51	42	0	0	57	0.98
46773--46807	17	2.1	17	89	5	54	42	0	0	57	0.99
49129--49171	22	2.0	22	95	0	77	48	16	13	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49914--49980	30	2.2	31	81	2	73	31	28	20	19	1.97
49928--50018	31	3.0	31	83	1	112	26	27	19	26	1.99
52826--52860	17	2.1	17	100	0	70	40	0	31	28	1.57
54966--55002	6	6.2	6	100	0	74	35	48	16	0	1.46
56779--56805	2	13.5	2	100	0	54	48	0	0	51	1.00
65393--65431	18	2.2	18	95	0	69	20	51	17	10	1.74
71825--71887	25	2.5	25	94	0	108	23	25	20	30	1.99
74687--74822	66	2.0	68	81	8	163	44	4	11	40	1.60
78675--78709	16	2.1	16	89	5	52	34	20	5	40	1.76
79687--79738	21	2.5	21	81	3	61	38	19	25	17	1.93
79724--79801	41	1.9	41	86	0	111	39	21	16	21	1.92
79727--79821	20	4.7	20	80	2	91	34	24	17	23	1.96
80009--80052	22	2.0	22	90	0	70	20	43	15	20	1.88
80331--80373	20	2.2	20	95	0	77	9	18	18	53	1.70
81688--81732	18	2.5	18	88	0	72	26	44	15	13	1.83
82214--82280	20	3.4	20	81	2	73	38	23	22	14	1.92
82269--82326	14	3.9	14	79	16	71	48	24	17	10	1.78
82253--82343	32	2.8	33	94	3	166	47	21	18	12	1.81
82360--82417	14	3.9	14	79	16	71	8	17	25	48	1.75
82355--82433	32	2.4	33	95	2	142	10	18	24	46	1.80
82374--82491	20	6.4	19	77	11	95	13	20	24	41	1.88
84341--84376	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84464--84541	33	2.4	33	91	4	122	39	21	24	14	1.90
84560--84618	21	2.9	20	92	5	100	15	22	23	38	1.92
85670--85716	24	2.0	24	91	0	76	29	19	17	34	1.94
85670--85728	24	2.5	24	85	0	73	28	16	18	35	1.93
85903--85927	12	2.1	12	100	0	50	72	0	28	0	0.86
88223--88287	19	3.7	19	70	19	68	43	20	24	12	1.86
88223--88285	33	1.9	33	96	0	117	41	20	25	12	1.88
88446--88482	14	2.6	14	91	0	65	45	24	0	29	1.53
89839--89905	21	3.2	21	68	4	55	19	19	35	25	1.95
89839--89961	42	2.9	41	80	7	113	22	17	36	23	1.94
91961--92140	19	9.8	19	73	17	112	45	22	20	11	1.83
91986--92084	33	3.0	33	86	1	135	40	26	22	11	1.87
92056--92145	19	4.7	19	91	2	144	47	22	18	11	1.80
92056--92145	39	2.3	38	96	1	162	47	22	18	11	1.80
92745--92790	20	2.3	20	88	7	67	26	15	30	28	1.96
92903--92943	21	2.0	21	85	0	55	34	31	17	17	1.93
93266--93335	32	2.2	32	80	12	83	41	7	4	47	1.50
95040--95192	64	2.4	64	80	8	177	35	18	17	28	1.94
97174--97332	63	2.5	63	80	4	151	31	19	22	27	1.98
97882--97934	22	2.4	22	93	0	88	18	24	28	28	1.98
99935--99972	20	1.9	20	84	10	51	28	7	18	44	1.78
104014--104132	64	1.9	63	80	5	141	35	18	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104165--104218	24	2.2	24	100	0	108	29	20	24	25	1.99
104748--104808	22	2.8	22	89	0	95	19	24	27	27	1.99
104793--104845	18	2.9	18	85	0	70	18	13	35	32	1.90
112422--112510	31	3.0	30	80	4	81	35	8	13	41	1.76
112458--112523	30	2.2	31	91	2	107	34	9	16	39	1.80
112610--112666	28	2.1	28	90	3	89	38	12	12	36	1.80
113477--113556	40	2.0	40	92	0	133	33	8	12	45	1.73
115427--115540	60	1.9	60	83	7	151	28	17	17	36	1.93
115746--115861	60	1.9	60	82	3	144	29	19	19	31	1.97

Tables:   1

The End!