Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004264.1 Hibiscus syriacus cultivar Beakdansim tig00009342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62404
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Found at i:189 original size:57 final size:58
Alignment explanation
Indices: 34--248 Score: 274
Period size: 58 Copynumber: 3.7 Consensus size: 58
24 TTCAATTTTC
* * ** *
34 CAAGGAAATAAATTCAACAATTTATGCTCATTATAAAGTTAGAATCATTTAAGATTCT
1 CAAGGAAATAAATTAAACAATCTATTTTCCTTATAAAGTTAGAATCATTTAAGATTCT
* * * *
92 AAAGGAAATAAATTAAACAATCTA-TTTCCTTAAAAAAGTTAGAATCATTAAAGATTAT
1 CAAGGAAATAAATTAAACAATCTATTTTCCTT-ATAAAGTTAGAATCATTTAAGATTCT
* * * *
150 CAAGGAAA-AAATTAAACAATATATTTTCCTTACAAAGTTAGCATCATTTAATATTCT
1 CAAGGAAATAAATTAAACAATCTATTTTCCTTATAAAGTTAGAATCATTTAAGATTCT
*
207 CAAGGAAATAAATTCAACAATCT-TTTTCCTTATAAAGTTAGA
1 CAAGGAAATAAATTAAACAATCTATTTTCCTTATAAAGTTAGA
249 GTTAACACAA
Statistics
Matches: 134, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
57 64 0.48
58 70 0.52
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (58 bp):
CAAGGAAATAAATTAAACAATCTATTTTCCTTATAAAGTTAGAATCATTTAAGATTCT
Found at i:212 original size:115 final size:115
Alignment explanation
Indices: 34--248 Score: 306
Period size: 115 Copynumber: 1.9 Consensus size: 115
24 TTCAATTTTC
* * *
34 CAAGGAAATAAATTCAACAATTTATGCTCATTATAAAGTTAGAATCATTTAAGATTCTAAAGGAA
1 CAAGGAAATAAATTAAACAATATATGCTCATTACAAAGTTAGAATCATTTAAGATTCTAAAGGAA
99 ATAAATTAAACAATCTATTTCCTTAAAAAAGTTAGAATCATTAAAGATTAT
66 ATAAATTAAACAATCTATTTCCTT-AAAAAGTTAGAATCATTAAAGATTAT
** * * * *
150 CAAGGAAA-AAATTAAACAATATATTTTCCTTACAAAGTTAGCATCATTTAATATTCTCAAGGAA
1 CAAGGAAATAAATTAAACAATATATGCTCATTACAAAGTTAGAATCATTTAAGATTCTAAAGGAA
* * *
214 ATAAATTCAACAATCTTTTTCCTTATAAAGTTAGA
66 ATAAATTAAACAATCTATTTCCTTAAAAAGTTAGA
249 GTTAACACAA
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
114 10 0.11
115 69 0.79
116 8 0.09
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (115 bp):
CAAGGAAATAAATTAAACAATATATGCTCATTACAAAGTTAGAATCATTTAAGATTCTAAAGGAA
ATAAATTAAACAATCTATTTCCTTAAAAAGTTAGAATCATTAAAGATTAT
Found at i:1213 original size:31 final size:30
Alignment explanation
Indices: 1178--1260 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 30
1168 GGAGTACTTG
1178 GGGCATGC-GAGCCTACCCAAGAAAATTCTCA
1 GGGCA-GCAGAGCCTACCCAAGAAAA-TCTCA
* * *
1209 GGGCAACGGAGGCTTACCCAAGAAAATCTCA
1 GGGCAGCAGA-GCCTACCCAAGAAAATCTCA
*
1240 GGGCCGCAGAGCCTACCCAAG
1 GGGCAGCAGAGCCTACCCAAG
1261 GGTCACCTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
30 11 0.25
31 19 0.43
32 14 0.32
ACGTcount: A:0.31, C:0.30, G:0.27, T:0.12
Consensus pattern (30 bp):
GGGCAGCAGAGCCTACCCAAGAAAATCTCA
Found at i:1427 original size:24 final size:24
Alignment explanation
Indices: 1400--1497 Score: 108
Period size: 24 Copynumber: 4.1 Consensus size: 24
1390 GTAAACAGAA
*
1400 ATCAGAAATCATAACAAAATTCAG
1 ATCAGAAATCATAACAAAATCCAG
* * * *
1424 ATCAGATATCAGAACAGAATCCAT
1 ATCAGAAATCATAACAAAATCCAG
* * *
1448 ATCAGATATCATAATAGAATCCAG
1 ATCAGAAATCATAACAAAATCCAG
1472 ATCAGAAATCATAACAGAAAT-CAG
1 ATCAGAAATCATAACA-AAATCCAG
1496 AT
1 AT
1498 AAAACATTCA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
24 59 0.95
25 3 0.05
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCATAACAAAATCCAG
Found at i:8402 original size:21 final size:22
Alignment explanation
Indices: 8376--8416 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8366 CCATAACAGG
8376 GAGTATCGATACT-CCTTTAAT
1 GAGTATCGATACTACCTTTAAT
*
8397 GAGTATCGGTACTACCTTTA
1 GAGTATCGATACTACCTTTA
8417 TAATATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (22 bp):
GAGTATCGATACTACCTTTAAT
Found at i:9465 original size:14 final size:16
Alignment explanation
Indices: 9426--9467 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
9416 AATTTTGACC
9426 AAAAATCATTATGATG
1 AAAAATCATTATGATG
9442 AACAAA-CATT-T-ATG
1 AA-AAATCATTATGATG
9456 AAAAATCATTAT
1 AAAAATCATTAT
9468 AACTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 3 0.13
14 9 0.39
15 2 0.09
16 6 0.26
17 3 0.13
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (16 bp):
AAAAATCATTATGATG
Found at i:11274 original size:21 final size:22
Alignment explanation
Indices: 11248--11288 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
11238 CCAGAACAGG
11248 GAGTATCGGTACT-CCTTTAAT
1 GAGTATCGGTACTACCTTTAAT
*
11269 GAGTATCGTTACTACCTTTA
1 GAGTATCGGTACTACCTTTA
11289 TAATATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (22 bp):
GAGTATCGGTACTACCTTTAAT
Found at i:13116 original size:17 final size:17
Alignment explanation
Indices: 13094--13128 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
13084 GAAAAAGATA
13094 ACCAACGATCGATAATC
1 ACCAACGATCGATAATC
13111 ACCAACGATCGATAATC
1 ACCAACGATCGATAATC
13128 A
1 A
13129 ACATCAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.29, G:0.11, T:0.17
Consensus pattern (17 bp):
ACCAACGATCGATAATC
Found at i:13645 original size:15 final size:16
Alignment explanation
Indices: 13625--13658 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
13615 GACATAAATC
*
13625 TTAAGAGAAAAAG-AT
1 TTAAGAAAAAAAGAAT
13640 TTAAGAAAAAAAGAAT
1 TTAAGAAAAAAAGAAT
13656 TTA
1 TTA
13659 TAAAAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (16 bp):
TTAAGAAAAAAAGAAT
Found at i:16725 original size:19 final size:19
Alignment explanation
Indices: 16703--16781 Score: 86
Period size: 19 Copynumber: 4.2 Consensus size: 19
16693 TTTGAATCAG
* *
16703 AACTTATTTCCAGATTCAT
1 AACTTATTTTCAAATTCAT
*
16722 AACTTATTTTCAAACTCAT
1 AACTTATTTTCAAATTCAT
* * * *
16741 AGCTTACTGTCAGATTCAT
1 AACTTATTTTCAAATTCAT
*
16760 AGCTTATTTTCAAATTCAT
1 AACTTATTTTCAAATTCAT
16779 AAC
1 AAC
16782 CCAATACATA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (19 bp):
AACTTATTTTCAAATTCAT
Found at i:18579 original size:11 final size:11
Alignment explanation
Indices: 18563--18592 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
18553 GGTTAGGGTT
*
18563 CTTGATTTTCA
1 CTTGATTCTCA
18574 CTTGATTCTCA
1 CTTGATTCTCA
18585 CTTGATTC
1 CTTGATTC
18593 AAGCATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (11 bp):
CTTGATTCTCA
Found at i:22029 original size:17 final size:18
Alignment explanation
Indices: 22007--22040 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21997 TTTTCAACAT
*
22007 CTTAGT-TTCTTTCTTTC
1 CTTAGTCTTATTTCTTTC
22024 CTTAGTCTTATTTCTTT
1 CTTAGTCTTATTTCTTT
22041 ACAACAATCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.21, G:0.06, T:0.65
Consensus pattern (18 bp):
CTTAGTCTTATTTCTTTC
Found at i:27548 original size:10 final size:10
Alignment explanation
Indices: 27533--27581 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
27523 GGCTTTGTAA
27533 ATAATAATAT
1 ATAATAATAT
*
27543 ATAATATTAT
1 ATAATAATAT
* *
27553 ATTATTATAT
1 ATAATAATAT
27563 ATAATAACGTAT
1 ATAATAA--TAT
27575 ATAATAA
1 ATAATAA
27582 ACGTCATTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
10 21 0.68
12 10 0.32
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (10 bp):
ATAATAATAT
Found at i:28250 original size:85 final size:90
Alignment explanation
Indices: 28114--28414 Score: 274
Period size: 95 Copynumber: 3.3 Consensus size: 90
28104 AATTTTATTC
* * * ** ** *
28114 CACTACTCTTTCGTGGAGTTTCCATACTTTGCTGAAAAATTTGTTTTACTACTCTTTCGTGGAGC
1 CACTACTCTTCCGTGAAGTTT-GATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGAAC
*
28179 TTAGA-T-TT-TGG-T-CTTT-TGCTT
65 -TAAATTATTCTGGTTGCTTTCTGCTT
* *
28200 CACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTTCCGTGAAAAC
1 CACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTG-GAAC
28265 TAAATTTTATTCTGGTTCTTGCTTTCTGCTT
65 TAAA--TTATTCTGG---TTGCTTTCTGCTT
* *
28296 CACTACTCTTCTGTGAAGTTTGATACTTTGCTG-AAAATCCGTTCCACTACTCTTTTGTGGAAAC
1 CACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGG-AAC
* * *
28360 TGAATTTTATTCTAGTTCGTGCTTTCTACTT
65 T-AA-ATTATTCT-GGT--TGCTTTCTGCTT
*
28391 CGCTACTCTTCCGTGAAGTTTGAT
1 CACTACTCTTCCGTGAAGTTTGAT
28415 TTGACTTGAA
Statistics
Matches: 177, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
85 36 0.20
86 21 0.12
88 1 0.01
89 2 0.01
90 3 0.02
93 1 0.01
94 1 0.01
95 72 0.41
96 40 0.23
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.43
Consensus pattern (90 bp):
CACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTTTCGTGGAACT
AAATTATTCTGGTTGCTTTCTGCTT
Found at i:28383 original size:95 final size:96
Alignment explanation
Indices: 28191--28414 Score: 353
Period size: 95 Copynumber: 2.4 Consensus size: 96
28181 AGATTTTGGT
28191 CTTT-TGCTTCACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTT
1 CTTTCTGCTTCACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTT
* *
28255 CCGTGAAAACTAAATTTTATTCTGGTTCTTG
66 CCGTGAAAACTAAATTTTATTCTAGTTCGTG
*
28286 CTTTCTGCTTCACTACTCTTCTGTGAAGTTTGATACTTTGCTG-AAAATCCGTTCCACTACTCTT
1 CTTTCTGCTTCACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTT
** * *
28350 TTGTGGAAACTGAATTTTATTCTAGTTCGTG
66 CCGTGAAAACTAAATTTTATTCTAGTTCGTG
* *
28381 CTTTCTACTTCGCTACTCTTCCGTGAAGTTTGAT
1 CTTTCTGCTTCACTACTCTTCCGTGAAGTTTGAT
28415 TTGACTTGAA
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
95 81 0.69
96 37 0.31
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (96 bp):
CTTTCTGCTTCACTACTCTTCCGTGAAGTTTGATACTTTGCTGAAAAATCCGTTCCACTACTCTT
CCGTGAAAACTAAATTTTATTCTAGTTCGTG
Found at i:28700 original size:13 final size:13
Alignment explanation
Indices: 28682--28706 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28672 ATGCAAATGC
28682 AATGAAATGCATT
1 AATGAAATGCATT
28695 AATGAAATGCAT
1 AATGAAATGCAT
28707 GATGAATGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (13 bp):
AATGAAATGCATT
Found at i:29067 original size:22 final size:22
Alignment explanation
Indices: 29042--29085 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
29032 AGCTTTCGTT
*
29042 TTTGAAAAG-TGAATTTATCATC
1 TTTGAAAAGAT-AATCTATCATC
29064 TTTGAAAAGATAATCTATCATC
1 TTTGAAAAGATAATCTATCATC
29086 CTTGCAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (22 bp):
TTTGAAAAGATAATCTATCATC
Found at i:36150 original size:26 final size:24
Alignment explanation
Indices: 36069--36133 Score: 121
Period size: 24 Copynumber: 2.7 Consensus size: 24
36059 TCGGGCTTAG
*
36069 TTGTAAACGGGCCTGTGATTTACT
1 TTGTAACCGGGCCTGTGATTTACT
36093 TTGTAACCGGGCCTGTGATTTACT
1 TTGTAACCGGGCCTGTGATTTACT
36117 TTGTAACCGGGCCTGTG
1 TTGTAACCGGGCCTGTG
36134 TGCCTTTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.17, C:0.20, G:0.28, T:0.35
Consensus pattern (24 bp):
TTGTAACCGGGCCTGTGATTTACT
Found at i:36185 original size:10 final size:10
Alignment explanation
Indices: 36170--36217 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
36160 GGCTTTGTAA
36170 ATAATAATAT
1 ATAATAATAT
*
36180 ATAATATTAT
1 ATAATAATAT
* *
36190 ATTATTATAT
1 ATAATAATAT
*
36200 ATAATAATGT
1 ATAATAATAT
36210 AT-ATAATA
1 ATAATAATA
36218 AACGTCACTC
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (10 bp):
ATAATAATAT
Found at i:36632 original size:24 final size:25
Alignment explanation
Indices: 36603--36650 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
36593 CATTTAATTG
*
36603 ATTATATTTTTCATGTTA-AAAAAT
1 ATTATATTTATCATGTTAGAAAAAT
36627 ATTATATTTATCATGTTAGAAAAA
1 ATTATATTTATCATGTTAGAAAAA
36651 CATAAGGCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (25 bp):
ATTATATTTATCATGTTAGAAAAAT
Found at i:38133 original size:18 final size:18
Alignment explanation
Indices: 38110--38147 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
38100 AGTTAAATAA
38110 TACAAACGATACATCACT
1 TACAAACGATACATCACT
38128 TACAAACGATACATCACT
1 TACAAACGATACATCACT
38146 TA
1 TA
38148 AAATTTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.26, G:0.05, T:0.24
Consensus pattern (18 bp):
TACAAACGATACATCACT
Found at i:38517 original size:16 final size:16
Alignment explanation
Indices: 38496--38535 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
38486 ATATTGGCAT
38496 TATTTCCCCTTCTTAC
1 TATTTCCCCTTCTTAC
38512 TATTTCCCCTTCTTAC
1 TATTTCCCCTTCTTAC
38528 TATTTCCC
1 TATTTCCC
38536 AACCGGCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.38, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCCCCTTCTTAC
Found at i:38882 original size:81 final size:82
Alignment explanation
Indices: 38791--39148 Score: 354
Period size: 82 Copynumber: 4.4 Consensus size: 82
38781 TCTACGATAA
* * *
38791 AGTAATACTTTAGTGGCGTTTTTATACAAACGTCGA-AATA-GATTCATCCATAGTGGCGTTTTT
1 AGTAGTACTTTAGCGGCGTTTTTATACAAACG-CGACAATAGGGTTCATCCATAGTGGCGTTTTT
* *
38854 CAACAAACATTGTGACAG
65 CAACAAACGTCGTGACAG
* * * *
38872 AGTAGTACTTTAGC-G-GTATTTTATATAAACGTC-ATAATAGGGTTCATCCATAGTTGTGTTTT
1 AGTAGTACTTTAGCGGCGT-TTTTATACAAACG-CGACAATAGGGTTCATCCATAGTGGCGTTTT
38934 TCAACAAACGTCGTGACAG
64 TCAACAAACGTCGTGACAG
* * * * *
38953 AGTAGTACTTTAGCAGCATTTTTATACAAACGCTG-CAATACGGTTCATCCATAGTAGCTTTTTT
1 AGTAGTACTTTAGCGGCGTTTTTATACAAACGC-GACAATAGGGTTCATCCATAGTGGCGTTTTT
*
39017 CAACAAATGTCGTGACAG
65 CAACAAACGTCGTGACAG
** ** * * * * *
39035 AGTAGTACTTTAATGGTATTTTTATACAAATGCCACAATAGGGTTCATTCATAGCGGCATTTTTC
1 AGTAGTACTTTAGCGGCGTTTTTATACAAACGCGACAATAGGGTTCATCCATAGTGGCGTTTTTC
* * **
39100 AA-GAACGTTGCCACAG
66 AACAAACGTCGTGACAG
*
39116 AGTAGTACTTTAGCGGTGTTATTT-TACAAACGC
1 AGTAGTACTTTAGCGGCGTT-TTTATACAAACGC
39149 CGTAATAATT
Statistics
Matches: 232, Mismatches: 36, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.01
80 19 0.08
81 97 0.42
82 112 0.48
83 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (82 bp):
AGTAGTACTTTAGCGGCGTTTTTATACAAACGCGACAATAGGGTTCATCCATAGTGGCGTTTTTC
AACAAACGTCGTGACAG
Found at i:39146 original size:163 final size:163
Alignment explanation
Indices: 38791--39148 Score: 418
Period size: 163 Copynumber: 2.2 Consensus size: 163
38781 TCTACGATAA
* * *
38791 AGTAATACTTTAGTGGCGTTTTTATACAAACG-TCGAAATAGATTCATCCATAGTGGCGTTTTTC
1 AGTAGTACTTTAGCGGCGTTTTTATACAAACGCTCGAAATAGATTCATCCATAGTAGCGTTTTTC
* * * * *
38855 AACAAACATTGTGACAGAGTAGTACTTTAGCGGTATTTTATATAAACGTCATAATAGGGTTCATC
66 AACAAACATCGTGACAGAGTAGTACTTTAACGGTATTTTATACAAACGCCACAATAGGGTTCATC
** ** **
38920 CATAGTTGTGTTTTTCAACAAACGTCGTGACAG
131 CATAGCGGCATTTTTCAACAAACGTCGCCACAG
* * * * *
38953 AGTAGTACTTTAGCAGCATTTTTATACAAACGCT-GCAATACGGTTCATCCATAGTAGCTTTTTT
1 AGTAGTACTTTAGCGGCGTTTTTATACAAACGCTCGAAATA-GATTCATCCATAGTAGCGTTTTT
** * *
39017 CAACAAATGTCGTGACAGAGTAGTACTTTAATGGTATTTTTATACAAATGCCACAATAGGGTTCA
65 CAACAAACATCGTGACAGAGTAGTACTTTAACGGTA-TTTTATACAAACGCCACAATAGGGTTCA
* * *
39082 TTCATAGCGGCATTTTTCAA-GAACGTTGCCACAG
129 TCCATAGCGGCATTTTTCAACAAACGTCGCCACAG
*
39116 AGTAGTACTTTAGCGGTGTTATTT-TACAAACGC
1 AGTAGTACTTTAGCGGCGTT-TTTATACAAACGC
39149 CGTAATAATT
Statistics
Matches: 163, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
162 33 0.20
163 88 0.54
164 42 0.26
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (163 bp):
AGTAGTACTTTAGCGGCGTTTTTATACAAACGCTCGAAATAGATTCATCCATAGTAGCGTTTTTC
AACAAACATCGTGACAGAGTAGTACTTTAACGGTATTTTATACAAACGCCACAATAGGGTTCATC
CATAGCGGCATTTTTCAACAAACGTCGCCACAG
Found at i:42227 original size:42 final size:42
Alignment explanation
Indices: 42083--42230 Score: 133
Period size: 42 Copynumber: 3.5 Consensus size: 42
42073 TATAGTGGCG
* * * *
42083 TTTTTCTTACAAACG-TAGCAAT-AGACTGGTATATTAGTGACG
1 TTTTTCTTACAAACGCCA-CAATAAGAATGGTACATTAGTG-CA
* * * *
42125 CTTTTCTTATAAACGCCGCAAT-AGATTGGTACATTAGTGCA
1 TTTTTCTTACAAACGCCACAATAAGAATGGTACATTAGTGCA
* * *
42166 TTTTTATCACAAACGCCACAATAAGAATGGTACATTAGTG-G
1 TTTTTCTTACAAACGCCACAATAAGAATGGTACATTAGTGCA
*
42207 TGTTTTCTTACAAACACCACAATA
1 T-TTTTCTTACAAACGCCACAATA
42231 GGATGCATAA
Statistics
Matches: 86, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
41 19 0.22
42 67 0.78
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (42 bp):
TTTTTCTTACAAACGCCACAATAAGAATGGTACATTAGTGCA
Found at i:42824 original size:15 final size:15
Alignment explanation
Indices: 42806--42850 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
42796 GTTCTACTCT
42806 ATATTTATTTACTTA
1 ATATTTATTTACTTA
42821 ATATTTATTTACTTA
1 ATATTTATTTACTTA
42836 ATATTTATTTACTTA
1 ATATTTATTTACTTA
42851 TCAGCAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTTATTTACTTA
Found at i:48199 original size:14 final size:14
Alignment explanation
Indices: 48180--48241 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
48170 TTGATTTTAA
48180 TTTTAATATTAATT
1 TTTTAATATTAATT
*
48194 TTTTAATATT-ATA
1 TTTTAATATTAATT
*
48207 TTATAGATATTAA--
1 TTTTA-ATATTAATT
48220 TTTTAATATTAATT
1 TTTTAATATTAATT
*
48234 TTTAAATA
1 TTTTAATA
48242 AATTAAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 7 0.17
13 10 0.25
14 22 0.55
15 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
TTTTAATATTAATT
Found at i:48220 original size:40 final size:39
Alignment explanation
Indices: 48161--48265 Score: 141
Period size: 40 Copynumber: 2.8 Consensus size: 39
48151 AATTTATATT
*
48161 ATATTATATT-T-GATTTTAATTTTAATATTAATTTTTTA
1 ATATTATATTATAGATATTAATTTTAATATTAA-TTTTTA
48199 ATATTATATTATAGATATTAATTTTAATATTAATTTTTA
1 ATATTATATTATAGATATTAATTTTAATATTAATTTTTA
*
48238 A-A-TAAATTA-A-ATATTAATTTTAATATTA
1 ATATTATATTATAGATATTAATTTTAATATTA
48266 TATTATAGAT
Statistics
Matches: 63, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
35 18 0.29
36 1 0.02
37 6 0.10
38 11 0.17
39 8 0.13
40 19 0.30
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (39 bp):
ATATTATATTATAGATATTAATTTTAATATTAATTTTTA
Found at i:48305 original size:19 final size:15
Alignment explanation
Indices: 48280--48323 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
48270 ATAGATATTT
48280 AATTTTATATCATATAA
1 AATTTTATAT-AT-TAA
48297 ATTATTTTATATATTAA
1 A--ATTTTATATATTAA
48314 AATTTTATAT
1 AATTTTATAT
48324 TTATTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.36
17 5 0.20
18 2 0.08
19 9 0.36
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTATATATTAA
Found at i:48318 original size:61 final size:61
Alignment explanation
Indices: 48179--48328 Score: 152
Period size: 61 Copynumber: 2.5 Consensus size: 61
48169 TTTGATTTTA
** *
48179 ATTTTAATATTAATTTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTAAAT
1 ATTTTAATATTAAAATTTTAATATTATATTATAGATATTAATTTTAATATTAA-TTATAAAT
* * *
48241 AAATTAAATATT--AATTTTAATATTATATTATAGATATTTAATTTT-ATA-TCA-TATAAATT
1 -ATTTTAATATTAAAATTTTAATATTATATTATAGATA-TTAATTTTAATATTAATTATAAA-T
48300 ATTTTATATATTAAAATTTT-ATATT-TATT
1 ATTTTA-ATATTAAAATTTTAATATTATATT
48329 TAATTATTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
58 9 0.12
59 10 0.14
60 7 0.09
61 31 0.42
62 8 0.11
63 9 0.12
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (61 bp):
ATTTTAATATTAAAATTTTAATATTATATTATAGATATTAATTTTAATATTAATTATAAAT
Found at i:49826 original size:16 final size:16
Alignment explanation
Indices: 49791--49828 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
49781 GAGTTCTATT
49791 AATTT-AATTTATAAA
1 AATTTAAATTTATAAA
49806 AATTTAAATTT-TAAA
1 AATTTAAATTTATAAA
49821 ATATTTAA
1 A-ATTTAA
49829 CGTATAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTTAAATTTATAAA
Found at i:51045 original size:14 final size:15
Alignment explanation
Indices: 51021--51050 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51011 TACTCTTTAT
51021 TTTAAATTATTTAAC
1 TTTAAATTATTTAAC
51036 TTTAAA-TATTTAAC
1 TTTAAATTATTTAAC
51050 T
1 T
51051 AATTTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAAATTATTTAAC
Found at i:51407 original size:3 final size:3
Alignment explanation
Indices: 51399--51425 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
51389 ACCCCACAAT
51399 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
51426 CAAATTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:52531 original size:24 final size:24
Alignment explanation
Indices: 52482--52531 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
52472 GATAAAAATT
* **
52482 AATGATTAATTTAAACCAATTTAC
1 AATGATTAATTTAAACAAATAAAC
52506 AATGATTAATTT-AACTAAATAAAC
1 AATGATTAATTTAAAC-AAATAAAC
52530 AA
1 AA
52532 AGAGAAGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.34
Consensus pattern (24 bp):
AATGATTAATTTAAACAAATAAAC
Found at i:53200 original size:22 final size:22
Alignment explanation
Indices: 53175--53224 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
53165 GTTAGGCCAT
*
53175 CTCTAGTGCATTTCTATCTCTA
1 CTCTAGTGCATCTCTATCTCTA
53197 CTCTAGTGCATCTCTATCTCTA
1 CTCTAGTGCATCTCTATCTCTA
53219 CTCTAG
1 CTCTAG
53225 AGATGAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.18, C:0.30, G:0.10, T:0.42
Consensus pattern (22 bp):
CTCTAGTGCATCTCTATCTCTA
Found at i:53375 original size:13 final size:15
Alignment explanation
Indices: 53345--53377 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
53335 TATACATTTC
53345 TAAAAAATATCAAGA
1 TAAAAAATATCAAGA
53360 TAAAAAATAT-AA-A
1 TAAAAAATATCAAGA
53373 TAAAA
1 TAAAA
53378 CATTCATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 2 0.11
15 10 0.56
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
TAAAAAATATCAAGA
Found at i:53898 original size:116 final size:117
Alignment explanation
Indices: 53692--54027 Score: 530
Period size: 127 Copynumber: 2.8 Consensus size: 117
53682 ATATTCTACA
*
53692 TTTGTTGTATTTTAATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
1 TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
*
53757 CTATCTTGCAATTTAATCTAATTTAATCATT-AAAAAAATTCTGTTTTTATG
66 CTATCTTGCAATTTAATCTACTTTAATCATTAAAAAAAATTCTGTTTTTATG
53808 TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
1 TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
53873 CTATCTTGCAATTTAATCTACTTTAATTTAATTTAATCATTAAAAAAAATTCTGTTTTTATG
66 CTATCTTGCAATTTAATCTAC----------TTTAATCATTAAAAAAAATTCTGTTTTTATG
*
53935 TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTTAATGTATTTTTAT
1 TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
* *
54000 CTATCTTACAATTTAATCTACTTCAATC
66 CTATCTTGCAATTTAATCTACTTTAATC
54028 TAATTTAATC
Statistics
Matches: 204, Mismatches: 5, Indels: 21
0.89 0.02 0.09
Matches are distributed among these distances:
116 84 0.41
117 6 0.03
126 10 0.05
127 104 0.51
ACGTcount: A:0.31, C:0.08, G:0.07, T:0.54
Consensus pattern (117 bp):
TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
CTATCTTGCAATTTAATCTACTTTAATCATTAAAAAAAATTCTGTTTTTATG
Found at i:53993 original size:127 final size:126
Alignment explanation
Indices: 53768--54065 Score: 533
Period size: 127 Copynumber: 2.3 Consensus size: 126
53758 TATCTTGCAA
53768 TTTAATCTAATTTAATCATTAAAAAAATTCTGTTTTTATGTTTGTTGTATTTTTATGTTTCAAAA
1 TTTAATCTAATTTAATCATTAAAAAAATTCTGTTTTTATGTTTGTTGTATTTTTATGTTTCAAAA
*
53833 AATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTATCTATCTTGCAATTTAATCTAC
66 AATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTATCTATCTTACAATTTAATCTAC
*
53894 TTTAATTTAATTTAATCATTAAAAAAAATTCTGTTTTTATGTTTGTTGTATTTTTATGTTTCAAA
1 TTTAATCTAATTTAATCATT-AAAAAAATTCTGTTTTTATGTTTGTTGTATTTTTATGTTTCAAA
*
53959 AAATTAGTATGTTTATTTATCTAATTTTAATGTATTTTTATCTATCTTACAATTTAATCTAC
65 AAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTATCTATCTTACAATTTAATCTAC
*
54021 TTCAATCTAATTTAATCATTAAAAAAATTCTATGTTTTTATGTTT
1 TTTAATCTAATTTAATCATTAAAAAAATTC--TGTTTTTATGTTT
54066 CAAAAAATTA
Statistics
Matches: 164, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
126 29 0.18
127 122 0.74
128 13 0.08
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.53
Consensus pattern (126 bp):
TTTAATCTAATTTAATCATTAAAAAAATTCTGTTTTTATGTTTGTTGTATTTTTATGTTTCAAAA
AATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTATCTATCTTACAATTTAATCTAC
Found at i:54065 original size:111 final size:111
Alignment explanation
Indices: 53944--54148 Score: 365
Period size: 111 Copynumber: 1.8 Consensus size: 111
53934 GTTTGTTGTA
* * *
53944 TTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTTAATGTATTTTTATCTATCTTAC
1 TTTTTATGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATCTATCTTAC
*
54009 AATTTAATCTACTTCAATCTAATTTAATCATTAAAAAAATTCTATG
66 AATTTAATATACTTCAATCTAATTTAATCATTAAAAAAATTCTATG
*
54055 TTTTTATGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATTTATCTTAC
1 TTTTTATGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATCTATCTTAC
54120 AATTTAATATACTTCAATCTAATTTAATC
66 AATTTAATATACTTCAATCTAATTTAATC
54149 TAATTTAATC
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 89 1.00
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.52
Consensus pattern (111 bp):
TTTTTATGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATCTATCTTAC
AATTTAATATACTTCAATCTAATTTAATCATTAAAAAAATTCTATG
Found at i:54145 original size:243 final size:241
Alignment explanation
Indices: 53692--54148 Score: 634
Period size: 243 Copynumber: 1.9 Consensus size: 241
53682 ATATTCTACA
53692 TTTGTTGTATTTTAATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
1 TTTGTTGTATTTTAATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
* * * *** *** *
53757 CTATCTTGCAATTTAATCTAATTTAATCATTAAAAAAATTCTGTTTTTATGTTTGTTGTATTTTT
66 CTATCTTACAATTTAATCTAATTCAATCA-TAAAAAAATTCTATTAAAAAAATTCTTG-ATTTTT
* * *
53822 ATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTATCTATCTTGCAATTT
129 ATGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATCTATCTTACAATTT
* *
53887 AATCTACTTTAATTTAATTTAATCATTAAAAAAAATTCTGTTTTTATG
194 AATATACTTTAATTTAATCTAATCATTAAAAAAAATTCTGTTTTTATG
* *
53935 TTTGTTGTATTTTTATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTTAATGTATTTTTAT
1 TTTGTTGTATTTTAATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
* ***
54000 CTATCTTACAATTTAATCTACTTCAATC-TAATTTAA-TC-ATTAAAAAAATTCTATG-TTTTTA
66 CTATCTTACAATTTAATCTAATTCAATCATAAAAAAATTCTATTAAAAAAATTCT-TGATTTTTA
*
54061 TGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATTTATCTTACAATTTA
130 TGTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATCTATCTTACAATTTA
* * *
54126 ATATACTTCAATCTAATTTAATC
195 ATATACTTTAATTTAATCTAATC
54149 TAATTTAATC
Statistics
Matches: 190, Mismatches: 23, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
238 87 0.46
239 6 0.03
240 4 0.02
241 5 0.03
243 88 0.46
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.53
Consensus pattern (241 bp):
TTTGTTGTATTTTAATGTTTCAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTAT
CTATCTTACAATTTAATCTAATTCAATCATAAAAAAATTCTATTAAAAAAATTCTTGATTTTTAT
GTTTCAAAAAATTAATATGTTTATTTATCTAATTTCAATATATTTTTATCTATCTTACAATTTAA
TATACTTTAATTTAATCTAATCATTAAAAAAAATTCTGTTTTTATG
Found at i:54150 original size:10 final size:10
Alignment explanation
Indices: 54120--54158 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
54110 TTTATCTTAC
*
54120 AATTTAATAT
1 AATTTAATCT
* *
54130 ACTTCAATCT
1 AATTTAATCT
54140 AATTTAATCT
1 AATTTAATCT
54150 AATTTAATC
1 AATTTAATC
54159 ATTAAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (10 bp):
AATTTAATCT
Found at i:54820 original size:22 final size:21
Alignment explanation
Indices: 54779--54820 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
54769 ATTAATAATT
* *
54779 TTATTTTTATGATATGTTTTC
1 TTATTTTTATGACATATTTTC
54800 TTATATTTTATGACATATTTT
1 TTAT-TTTTATGACATATTTT
54821 TTAATTCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (21 bp):
TTATTTTTATGACATATTTTC
Found at i:55745 original size:21 final size:21
Alignment explanation
Indices: 55704--55745 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
55694 TTTTTATTTA
*
55704 TTTAATAATTAAATAATAAAT
1 TTTAATAATTAAATAAAAAAT
55725 TTTAATAATATAAA-AAAAAAT
1 TTTAATAAT-TAAATAAAAAAT
55746 CATTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TTTAATAATTAAATAAAAAAT
Done.