genome.fa.s4265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004265.1 Hibiscus syriacus cultivar Beakdansim tig00009346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80673

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830--917	24	3.5	24	71	21	74	59	9	1	30	1.36
841--918	24	3.2	24	72	12	79	60	8	0	30	1.28
5691--5717	3	9.0	3	100	0	54	66	0	0	33	0.92
10142--10184	18	2.4	18	88	7	61	62	6	30	0	1.21
14938--14982	20	2.3	20	81	7	58	15	0	15	68	1.21
27286--27356	31	2.4	31	95	4	128	35	5	15	43	1.70
27535--27576	21	2.0	21	95	0	75	23	21	28	26	1.99
27605--27644	20	1.9	22	90	10	66	37	40	10	12	1.77
30715--30785	31	2.4	31	95	4	128	35	5	15	43	1.70
30971--31012	21	2.0	21	95	0	75	23	21	28	26	1.99
31041--31080	20	1.9	22	90	10	66	37	40	10	12	1.77
31295--31364	34	2.1	32	86	5	95	31	15	30	22	1.95
32598--32625	2	14.0	2	100	0	56	50	0	0	50	1.00
39520--39855	166	2.0	168	97	2	640	30	21	17	30	1.96
42532--42659	20	6.3	20	75	5	123	36	20	20	22	1.95
42532--42639	41	2.6	41	97	0	198	37	20	20	21	1.94
43521--43567	24	2.0	24	95	0	85	21	21	21	36	1.96
46006--46094	20	4.4	20	78	13	103	38	23	20	17	1.93
46016--46093	40	1.9	41	89	2	122	39	21	19	19	1.92
46099--46185	19	4.8	19	77	16	103	45	18	22	12	1.83
46066--46185	52	2.3	53	88	2	179	43	20	24	12	1.86
46189--46257	20	3.8	19	75	21	85	15	21	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46197--46290	33	2.8	34	88	3	136	13	23	20	42	1.88
47788--47878	42	2.2	42	80	4	103	25	17	36	20	1.94
48357--48440	33	2.5	33	82	1	105	47	22	19	10	1.80
48427--48478	20	2.6	20	96	0	95	38	23	21	17	1.93
48506--48649	20	7.5	20	85	9	210	18	18	21	41	1.90
48468--48649	40	4.9	40	80	13	210	17	19	20	42	1.90
48506--48647	54	2.5	57	85	7	200	18	19	21	41	1.90
50542--50611	20	3.5	20	88	0	77	41	24	17	17	1.89
50582--50654	33	2.2	34	85	7	96	39	24	20	15	1.91
50980--51051	22	3.5	22	70	14	62	19	16	36	27	1.93
51217--51290	20	3.7	20	78	3	85	22	20	20	36	1.95
57369--57411	18	2.4	18	88	7	61	23	6	2	67	1.27
58260--58353	18	6.0	15	77	18	86	48	5	3	42	1.41
58242--58324	18	4.8	17	77	21	75	50	3	2	43	1.32
58309--58353	13	3.3	13	87	6	63	48	6	4	40	1.49
58306--58379	28	2.9	24	82	10	76	52	5	4	37	1.43
58358--58472	52	2.3	51	80	8	128	44	2	6	46	1.44
58711--58784	37	2.1	36	84	5	96	41	8	10	39	1.70
58770--58833	20	3.2	20	82	4	74	48	6	7	37	1.57
58775--58828	21	2.7	20	88	2	72	50	7	3	38	1.48
58889--58976	2	44.0	2	69	20	51	50	1	5	43	1.33
58889--59049	40	4.1	39	75	17	138	51	1	6	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58939--59016	24	3.4	23	76	15	81	52	1	7	38	1.38
58959--59003	20	2.4	19	85	14	58	51	2	8	37	1.46
58893--59205	22	14.9	21	67	24	114	52	4	6	37	1.46
59085--59178	15	6.4	15	74	15	63	57	1	5	36	1.28
59092--59205	22	5.3	22	83	8	119	56	1	6	35	1.35
59092--59205	28	4.0	28	72	18	92	56	1	6	35	1.35
59092--59178	7	11.9	8	71	17	64	57	1	5	35	1.30
59093--59205	43	2.6	42	77	12	113	55	1	6	36	1.35
59192--59362	20	8.9	21	66	18	70	36	9	2	51	1.49
59200--59514	8	41.1	8	70	22	109	36	8	2	52	1.45
59252--59558	2	155.0	2	64	24	75	38	6	2	52	1.42
59389--59510	21	5.6	21	75	18	101	37	5	2	54	1.38
59431--59511	25	3.3	24	76	19	78	40	3	1	54	1.26
59354--59516	17	10.1	17	73	20	104	37	6	2	53	1.41
59566--59602	17	2.2	17	95	0	65	27	13	13	45	1.81
59453--59595	8	17.8	8	74	16	50	37	5	6	49	1.53
59601--59663	24	2.6	25	82	2	74	49	12	3	34	1.57
59700--59751	20	2.7	19	75	16	61	36	5	13	44	1.68
59953--59994	22	1.9	22	85	9	59	30	4	16	47	1.67
61515--61618	7	14.7	7	75	20	74	54	1	6	36	1.38
61514--61597	22	3.9	21	83	12	93	55	2	5	35	1.37
61513--61612	35	2.8	36	86	9	132	55	2	6	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61513--61616	36	2.9	36	87	8	140	53	1	6	37	1.38
61567--61628	21	2.9	19	83	13	61	51	0	6	41	1.27
61820--61870	16	3.2	16	72	8	50	43	13	17	25	1.86
62953--63049	3	32.3	3	95	0	176	34	2	0	63	1.06
63048--63093	22	2.1	21	84	4	56	63	2	0	34	1.07
64419--64454	19	1.9	19	94	5	65	19	2	5	72	1.17
65210--65254	19	2.4	19	85	7	56	26	2	4	66	1.22
72215--72253	19	2.0	19	85	5	51	58	2	7	30	1.39
75763--75857	1	95.0	1	80	0	109	90	0	9	0	0.45
75763--75859	22	4.3	22	93	3	149	89	0	10	0	0.48
75763--75864	45	2.2	48	87	8	158	88	0	11	0	0.52
77781--78303	111	4.7	112	97	2	970	37	13	18	29	1.90
78634--78706	3	24.3	3	94	0	128	34	2	0	63	1.09
80025--80077	21	2.5	21	81	0	61	24	0	5	69	1.09

Tables:   1

The End!