Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004266.1 Hibiscus syriacus cultivar Beakdansim tig00009348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141956

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13646--13704
30
2.0
30
100
0
118
33
3
13
49
1.59
19173--19266
31
3.0
31
78
7
84
25
22
9
42
1.83
31068--31113
20
2.3
20
100
0
92
13
10
13
63
1.53
41737--41803
22
3.0
22
95
2
116
25
28
26
19
1.99
43497--43541
21
2.1
21
87
0
63
15
24
28
31
1.96
46680--46746
22
3.0
22
95
2
116
25
28
26
19
1.99
48440--48484
21
2.1
21
87
0
63
15
24
28
31
1.96
50370--52068
84
20.5
82
78
7
1580
29
25
20
24
1.99
50370--52093
249
6.9
249
87
3
2088
29
25
20
24
1.99
50376--52068
165
10.2
165
81
6
1626
29
25
20
24
1.99
56865--56895
2
15.5
2
100
0
62
51
0
0
48
1.00
75727--75788
2
31.0
2
100
0
124
50
0
0
50
1.00
80067--80101
18
1.9
18
88
0
52
28
17
0
54
1.43
81418--81473
19
2.9
19
97
0
103
5
30
42
21
1.75
81499--81551
13
4.1
13
95
0
79
9
30
37
22
1.86
85249--85283
18
1.9
18
88
0
52
28
17
0
54
1.43
86639--86696
9
6.7
9
80
7
50
6
32
37
22
1.81
86650--86684
13
2.8
13
86
4
54
8
28
40
22
1.84
91645--91679
18
1.9
18
88
0
52
28
17
0
54
1.43
92996--93051
19
2.9
19
97
0
103
5
30
42
21
1.75
93077--93129
13
4.1
13
92
0
88
11
30
35
22
1.89
96825--96859
18
1.9
18
88
0
52
28
17
0
54
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98169--98205
19
1.9
19
94
0
65
5
29
43
21
1.75
98216--98273
9
6.7
9
80
7
50
6
32
37
22
1.81
98227--98261
13
2.8
13
86
4
54
8
28
40
22
1.84
100312--100341
3
10.0
3
100
0
60
66
0
0
33
0.92
101087--101128
2
21.0
2
100
0
84
50
0
0
50
1.00
112695--112755
20
3.3
20
65
25
62
34
6
1
57
1.34
112680--112754
34
2.2
34
97
2
143
33
5
2
58
1.34
115463--115594
65
2.0
65
85
5
178
29
24
7
38
1.83
135623--135656
15
2.3
15
89
0
50
8
17
64
8
1.47

Tables:   1

The End!