Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004267.1 Hibiscus syriacus cultivar Beakdansim tig00009352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92165

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10454--10534
31
2.6
31
92
3
128
54
9
16
19
1.69
11823--11885
26
2.4
26
97
0
117
20
38
23
17
1.93
14740--14794
25
2.2
25
84
9
69
27
3
5
63
1.33
14751--14804
25
2.2
24
87
6
74
31
3
1
62
1.23
15154--15210
19
3.1
19
76
2
62
40
1
3
54
1.28
15212--15269
23
2.5
22
80
5
62
50
0
0
50
1.00
18317--18448
63
2.1
62
79
12
137
26
13
3
56
1.52
18498--18544
24
2.0
24
91
8
78
48
0
0
51
1.00
18498--18544
12
4.2
12
81
10
55
48
0
0
51
1.00
24318--24506
20
9.2
20
78
10
168
42
21
19
16
1.89
24375--24506
42
3.2
42
87
4
189
40
22
19
16
1.91
24599--24628
6
5.0
6
100
0
60
33
50
16
0
1.46
25251--25347
20
4.8
20
89
7
151
16
20
28
34
1.95
34201--34230
2
15.0
2
100
0
60
50
0
0
50
1.00
38209--38254
18
2.4
18
89
7
65
45
8
45
0
1.34
40709--40931
30
7.4
30
97
0
410
32
23
19
24
1.97
40917--41009
31
3.0
31
79
3
98
33
22
17
26
1.96
45926--45971
18
2.4
18
89
7
65
45
8
45
0
1.34
52769--52803
17
2.1
17
100
0
70
28
11
37
22
1.89
71089--71256
53
3.1
53
94
1
282
42
21
11
24
1.86
73376--73589
105
2.0
105
93
1
367
39
13
8
38
1.75
91076--91114
16
2.4
16
86
0
51
30
25
10
33
1.89

Tables:   1

The End!