Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004268.1 Hibiscus syriacus cultivar Beakdansim tig00009353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78296

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--154
27
2.0
27
81
7
63
33
7
24
33
1.84
9055--9092
20
1.9
20
94
0
67
18
15
34
31
1.92
15620--15662
20
2.2
20
83
8
52
37
4
2
55
1.33
17331--17374
21
2.1
21
87
8
63
9
20
11
59
1.59
17331--17366
11
3.4
11
96
3
65
8
25
8
58
1.55
17646--17736
45
2.0
46
93
2
157
26
19
26
27
1.99
23428--23569
58
2.4
57
86
4
185
15
18
19
46
1.84
24425--24468
21
2.1
21
82
0
52
40
15
6
36
1.74
25497--25546
14
3.8
13
82
12
66
44
0
2
54
1.11
29870--29939
30
2.4
29
90
4
106
44
1
2
51
1.25
29870--29939
15
4.8
15
78
7
90
44
1
2
51
1.25
36432--36466
14
2.6
13
86
8
52
60
0
2
37
1.12
36450--36499
14
3.6
13
82
12
55
58
0
2
40
1.10
38949--39001
3
18.7
3
88
11
85
28
0
0
71
0.86
39047--39116
30
2.3
31
80
11
83
17
4
0
78
0.90
39065--39107
21
2.1
20
91
4
68
11
2
0
86
0.67
39064--39116
15
3.6
15
84
2
72
15
3
0
81
0.83
39071--39116
21
2.2
21
88
7
67
13
4
0
82
0.81
39131--39173
2
21.5
2
100
0
86
48
0
0
51
1.00
39213--39358
7
19.6
7
74
16
55
17
5
2
73
1.14
39294--39358
34
2.0
31
84
9
76
15
6
0
78
0.94
39293--39370
35
2.2
35
78
17
90
15
7
0
76
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39391--39423
15
2.1
16
88
5
50
6
15
0
78
0.93
40534--40566
17
1.9
17
93
0
57
6
12
9
72
1.26
44626--45356
84
8.8
84
80
4
817
29
25
20
24
1.99
44626--45405
165
4.7
164
84
3
800
29
25
20
24
1.99
47036--47099
8
8.0
8
71
11
51
17
4
0
78
0.92
47054--47101
14
3.1
15
77
17
53
14
6
0
79
0.92
47033--47105
23
3.1
23
83
13
87
19
5
0
75
0.99
47033--47098
16
4.1
17
77
13
61
18
4
0
77
0.94
47031--47104
31
2.4
31
84
6
98
17
5
0
77
0.96
47353--47427
5
14.8
5
74
18
57
18
4
2
74
1.09
47364--47443
38
2.1
38
81
4
90
17
7
2
72
1.19
48475--48534
19
3.1
19
92
2
93
55
0
0
45
0.99
49158--49190
2
16.5
2
100
0
66
48
0
0
51
1.00
58440--58485
17
2.5
19
79
13
60
43
0
0
56
0.99
58360--58494
11
13.8
10
67
22
56
42
0
1
54
1.14
58817--58897
29
2.7
30
86
1
110
38
11
8
41
1.71
58817--58902
30
2.9
29
85
1
109
36
10
8
45
1.68
58852--58901
14
3.4
14
78
10
64
36
16
6
42
1.72
67455--67576
28
4.4
28
94
0
208
39
13
13
34
1.83
69158--69182
3
8.3
3
100
0
50
32
0
0
68
0.90
69663--69693
12
2.7
12
95
5
55
29
41
0
29
1.56
74920--74976
24
2.2
24
78
9
60
43
1
1
52
1.21

Tables:   1

The End!