genome.fa.s4269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004269.1 Hibiscus syriacus cultivar Beakdansim tig00009363_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130192

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9009--9102	34	2.7	36	88	8	158	21	24	36	18	1.95
9183--9267	29	2.9	29	83	0	107	12	29	40	17	1.87
19269--19428	64	2.5	62	84	8	180	33	18	21	26	1.96
20811--21121	145	2.1	147	94	3	547	27	18	20	34	1.96
21089--21133	23	2.0	23	90	0	72	22	26	26	24	2.00
29559--29619	21	2.9	21	68	18	54	52	8	1	37	1.41
39301--39364	23	2.8	23	90	0	101	26	26	28	18	1.98
39380--39592	103	2.1	103	95	0	381	36	23	13	26	1.92
44277--44386	31	3.8	30	75	16	115	35	13	15	35	1.87
44271--44416	55	2.6	56	90	2	224	35	16	14	33	1.89
44755--44779	12	2.1	12	100	0	50	16	36	8	40	1.77
44768--44818	16	3.2	16	82	0	66	15	27	11	45	1.81
45055--45104	23	2.1	24	92	3	84	46	2	4	48	1.32
45267--45297	7	4.4	7	95	0	53	19	0	35	45	1.51
45583--45629	14	3.4	14	84	0	58	29	0	23	46	1.52
45902--45955	14	3.9	14	82	0	63	24	0	24	51	1.48
45890--45934	21	2.1	21	87	0	63	26	0	20	53	1.46
45895--45962	7	9.7	7	74	6	57	22	0	26	51	1.48
46421--46470	7	7.1	7	79	0	55	18	0	38	44	1.50
46526--46623	2	49.5	2	97	2	189	50	0	0	50	1.00
46679--46720	15	2.7	16	85	3	59	45	4	2	47	1.36
46961--47012	17	2.8	19	88	8	72	26	28	0	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47138--47191	24	2.2	24	86	3	72	37	3	5	53	1.42
47164--47285	15	8.1	14	73	21	81	44	3	4	47	1.41
47164--47285	13	9.2	13	71	16	65	44	3	4	47	1.41
47216--47275	18	3.3	18	84	11	68	46	1	5	46	1.34
51193--51233	17	2.4	17	95	0	73	36	4	53	4	1.44
65835--65861	6	4.5	6	100	0	54	66	0	18	14	1.25
66544--66622	2	39.5	2	100	0	158	49	0	0	50	1.00
70126--70222	30	3.2	30	98	0	185	31	24	19	23	1.98
70986--71028	21	2.0	21	81	0	50	30	30	25	13	1.94
70986--71156	67	2.6	66	85	5	211	28	27	26	17	1.98
71523--71581	30	2.0	30	93	0	100	38	3	23	33	1.72
71792--71860	22	3.1	22	97	2	129	18	27	27	26	1.98
73984--74028	21	2.1	21	91	0	72	17	24	26	31	1.97
75771--75816	13	3.5	13	86	13	67	8	0	34	56	1.30
75768--75824	20	2.8	21	78	10	55	12	0	33	54	1.38
75778--75825	14	3.5	14	81	13	55	14	0	33	52	1.42
76329--76389	11	5.7	11	72	14	56	39	1	1	57	1.18
78440--78470	15	2.1	15	94	5	55	64	0	25	9	1.24
81146--81190	21	2.1	21	87	0	63	31	28	24	15	1.96
82572--82599	14	2.0	14	100	0	56	28	7	28	35	1.84
82700--83014	149	2.1	149	95	1	569	26	16	21	34	1.95
82982--83026	23	2.0	23	90	0	72	22	26	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86922--86950	2	15.0	2	92	7	51	51	0	0	48	1.00
101173--101249	37	2.1	37	85	4	102	48	1	3	46	1.28
101395--101432	20	1.9	20	88	0	58	21	26	10	42	1.85
102900--103237	20	16.6	20	78	6	214	38	19	23	18	1.93
103004--103235	40	5.7	40	83	4	248	36	18	25	19	1.95
103004--103237	83	2.9	82	83	3	292	35	18	25	19	1.95
102900--103237	40	8.3	40	75	10	238	38	19	23	18	1.93
103325--103374	6	8.5	6	97	2	93	32	52	16	0	1.44
104061--104162	6	17.5	6	94	5	183	0	16	50	32	1.45
104061--104162	29	3.5	30	94	5	183	0	16	50	32	1.45
104250--104567	20	15.6	20	77	7	192	18	22	19	39	1.93
104252--104442	40	4.7	40	83	3	220	19	24	18	37	1.94
104252--104463	83	2.6	82	84	3	266	19	24	18	37	1.94
104517--104567	19	2.6	20	90	3	77	15	17	23	43	1.88
105219--105258	20	1.9	22	90	10	66	37	0	7	55	1.29
110433--110470	20	1.9	20	94	0	67	34	23	21	21	1.97
111165--111200	18	2.0	18	100	0	72	16	22	33	27	1.95
115047--115099	25	2.2	24	89	3	79	45	3	1	49	1.31
115057--115109	25	2.1	25	85	0	70	50	3	3	41	1.38
127731--127774	18	2.4	19	77	11	56	50	0	0	50	1.00

Tables:   1

The End!