genome.fa.s427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000427.1 Hibiscus syriacus cultivar Beakdansim tig00000786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142580

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2978--3059	23	3.7	23	78	6	105	24	25	23	26	2.00
4999--5044	23	2.0	23	100	0	92	17	4	26	52	1.63
4999--5057	23	2.6	22	89	7	84	16	5	28	49	1.67
5685--5849	64	2.6	64	83	6	192	28	23	18	29	1.98
5739--5872	64	2.1	65	84	6	175	28	22	20	29	1.98
10184--10226	19	2.2	19	83	4	50	67	16	0	16	1.24
10630--10706	23	3.6	22	73	14	56	29	16	20	32	1.95
16577--16628	19	2.7	19	82	8	70	53	3	3	38	1.37
16577--16620	20	2.3	19	88	4	61	54	4	4	36	1.41
17673--17717	19	2.5	18	78	7	56	60	8	11	20	1.57
20529--20624	20	4.8	20	70	2	66	28	13	15	42	1.85
20155--20557	197	2.0	198	90	1	630	31	15	13	40	1.86
21340--21384	20	2.2	20	96	0	81	35	13	24	26	1.92
21853--21890	2	19.0	2	100	0	76	50	0	0	50	1.00
25530--25580	23	2.2	23	89	3	75	41	0	1	56	1.10
25530--25590	23	2.5	23	84	7	59	40	0	1	57	1.08
26732--26767	17	2.1	17	90	10	56	41	0	5	52	1.24
27308--27429	42	2.9	42	85	4	165	26	34	16	22	1.95
27354--27431	21	3.7	20	65	21	52	26	37	12	23	1.91
27302--27452	42	3.6	42	81	3	142	26	35	15	23	1.94
28266--28305	21	1.9	21	94	0	71	55	2	0	42	1.13
28462--29201	136	5.4	136	83	2	831	34	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28461--29201	273	2.7	270	83	3	887	34	20	19	25	1.96
33708--33752	19	2.4	19	92	0	72	48	8	15	26	1.74
39580--39656	36	2.1	36	87	0	109	15	37	12	33	1.86
43549--43601	22	2.4	22	100	0	106	33	3	16	45	1.66
43738--44009	107	2.5	107	85	4	350	39	10	14	35	1.81
44689--44735	23	2.0	24	87	4	69	25	8	23	42	1.82
44635--44814	98	1.8	97	87	2	254	33	13	13	40	1.83
45056--45094	20	2.0	20	84	0	51	33	35	12	17	1.88
47881--48083	106	1.9	105	89	3	318	35	9	12	41	1.77
51912--51980	18	3.7	18	74	14	68	18	20	28	31	1.96
51905--51981	38	2.0	38	87	5	111	20	19	28	31	1.97
58753--58825	18	3.9	18	82	7	92	20	19	31	28	1.97
59883--60044	77	2.1	76	83	9	199	30	11	11	47	1.74
61269--61465	73	2.7	73	83	4	236	32	12	13	41	1.82
65769--65905	59	2.3	59	82	2	186	28	18	24	28	1.98
66006--66131	47	2.8	45	89	5	191	38	7	23	30	1.83
73288--73423	59	2.3	59	80	2	175	28	16	25	29	1.97
73524--73650	47	2.8	45	88	7	184	38	7	22	30	1.83
74984--75044	29	2.1	29	87	0	86	26	22	6	44	1.77
75013--75169	81	1.9	81	87	2	226	28	22	12	36	1.91
75455--76030	59	9.8	59	91	0	866	33	17	13	35	1.89
76398--76474	39	2.0	40	84	2	102	24	27	16	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88984--89029	20	2.3	19	85	14	58	26	13	10	50	1.74
89907--89945	20	2.0	20	85	10	53	64	2	0	33	1.08
91869--92509	198	3.3	197	84	5	804	32	14	12	40	1.83
98797--98883	35	2.5	34	80	12	97	54	10	8	27	1.62
101199--101236	18	2.2	18	95	4	69	65	2	0	31	1.06
104273--104333	21	3.0	20	68	15	52	26	36	16	21	1.94
104341--104413	21	3.5	21	74	7	76	23	31	20	24	1.98
105320--106119	137	5.9	138	83	4	901	36	21	18	24	1.95
105312--106118	273	3.0	272	83	5	970	36	21	18	24	1.95
109439--109482	20	2.1	21	87	4	63	47	31	0	20	1.50
113873--114092	105	2.1	107	84	3	282	40	10	12	36	1.77
113908--114156	108	2.3	105	82	3	275	41	11	11	35	1.77
114462--114524	31	2.0	30	82	11	74	36	4	15	42	1.69
114814--114861	22	2.1	23	88	3	71	27	12	20	39	1.89
115348--115388	21	1.9	22	95	5	75	36	14	19	29	1.92
118213--118409	109	1.9	109	86	7	262	38	9	12	39	1.75
118868--118908	21	1.9	22	85	5	57	34	17	24	24	1.96
126178--126258	23	3.8	21	75	12	58	24	29	24	20	1.99
126178--126240	23	2.8	23	82	2	74	23	30	23	22	1.99
128777--128827	21	2.4	22	96	3	95	17	31	25	25	1.97
130740--130792	23	2.3	23	93	0	88	18	22	18	39	1.92
132640--132683	20	2.2	20	91	0	70	56	4	13	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133682--133893	106	2.0	108	89	1	329	36	9	12	41	1.76
135008--135315	75	4.1	75	88	0	402	34	13	10	41	1.79
135008--135315	149	2.1	150	86	0	429	34	13	10	41	1.79
136691--136720	4	7.5	4	92	0	51	26	0	0	73	0.84

Tables:   1

The End!