Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004270.1 Hibiscus syriacus cultivar Beakdansim tig00009364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73112

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8845--8869
13
1.9
13
100
0
50
88
0
0
12
0.53
9082--9112
2
16.0
2
93
6
55
48
0
0
51
1.00
9166--9200
13
2.6
14
90
4
54
45
28
0
25
1.54
13294--13533
53
4.5
53
87
2
318
33
11
13
41
1.80
20651--20684
13
2.6
13
90
9
52
79
2
0
17
0.86
22111--22137
14
1.9
14
100
0
54
44
3
7
44
1.49
22227--22267
21
1.9
22
90
5
66
46
2
0
51
1.14
22279--22325
14
3.3
14
77
14
51
38
2
2
57
1.23
28241--28280
20
2.0
20
85
9
55
47
2
0
50
1.14
32626--32664
18
2.1
19
95
4
71
0
56
17
25
1.41
32784--32850
33
2.0
33
100
0
134
34
11
26
26
1.91
32896--32958
26
2.3
27
86
10
92
50
7
34
6
1.57
33100--33140
22
1.9
21
85
5
55
26
0
19
53
1.45
33440--33486
16
3.0
16
84
9
53
29
0
10
59
1.31
33461--33491
15
2.1
14
94
5
53
38
0
6
54
1.26
35708--35789
21
3.6
22
70
19
69
51
9
0
39
1.35
35703--35860
46
3.3
48
86
7
223
47
9
0
43
1.36
35801--35874
10
7.7
10
74
19
50
44
10
0
44
1.39
35800--35892
28
3.2
28
67
11
71
45
10
0
44
1.38
35723--35871
46
3.2
45
90
5
226
47
9
0
42
1.35
35817--35983
60
2.8
60
92
0
280
46
11
0
42
1.40
35817--36619
120
6.8
120
71
19
575
45
11
1
41
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35924--36241
49
6.2
49
68
22
204
45
11
0
42
1.40
35699--36304
109
5.6
108
79
13
689
46
11
0
41
1.41
35973--36615
60
10.8
60
71
16
412
45
11
1
41
1.50
36076--36252
92
1.9
92
95
0
318
44
13
0
41
1.44
35699--36619
321
2.8
313
81
13
946
45
11
0
41
1.47
36136--36192
11
5.4
11
93
6
100
43
17
0
38
1.49
36136--36312
21
8.7
21
70
18
99
45
13
0
41
1.44
36283--36330
25
2.0
24
88
12
71
39
14
0
45
1.45
36385--36471
14
5.8
14
75
12
66
48
11
0
40
1.39
36400--36600
21
9.5
21
63
19
62
47
10
0
41
1.38
36401--36505
48
2.2
49
91
1
167
48
9
0
41
1.35
39270--39328
29
2.0
29
100
0
118
42
13
16
27
1.86
40142--40203
28
2.1
30
94
5
110
56
12
0
30
1.37
40628--40671
23
1.9
23
100
0
88
27
27
20
25
1.99
40661--40751
45
2.0
46
95
2
166
26
19
31
21
1.98
40776--40864
29
3.1
29
88
0
124
13
23
40
22
1.89
43994--44033
21
2.0
20
90
5
62
42
0
2
55
1.13
44739--44778
3
13.7
3
84
5
55
2
35
0
62
1.09
52450--52503
21
2.6
21
96
0
99
25
16
27
29
1.97
52471--52639
41
4.3
41
74
18
187
18
20
25
36
1.95
52567--52648
20
4.1
20
79
3
101
14
21
24
39
1.91
52487--52625
75
1.9
75
89
4
219
20
20
24
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53310--53337
6
4.7
6
100
0
56
0
17
50
32
1.47

Tables:   1

The End!