Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004271.1 Hibiscus syriacus cultivar Beakdansim tig00009365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86049
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:1991 original size:13 final size:14
Alignment explanation
Indices: 1973--2002 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1963 TTTTTAAATA
1973 ATTTATATTAT-AT
1 ATTTATATTATAAT
1986 ATTTATATTATAAT
1 ATTTATATTATAAT
2000 ATT
1 ATT
2003 AATAAGTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTTATATTATAAT
Found at i:8684 original size:24 final size:22
Alignment explanation
Indices: 8649--8721 Score: 85
Period size: 24 Copynumber: 3.2 Consensus size: 22
8639 ATACTTTTAA
* *
8649 TAAATGAAA-AAATTATATTTT
1 TAAATAAAATAAAATATATTTT
8670 TAAATAAAAATAAAAATATATTTT
1 TAAAT-AAAAT-AAAATATATTTT
*
8694 TAAATAAAATAAAAAATATATTT
1 TAAATAAAATAAAATATAT-TTT
8717 TAAAT
1 TAAAT
8722 TAAGTTAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 5 0.11
22 11 0.24
23 13 0.29
24 16 0.36
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (22 bp):
TAAATAAAATAAAATATATTTT
Found at i:8702 original size:23 final size:24
Alignment explanation
Indices: 8656--8721 Score: 100
Period size: 23 Copynumber: 2.8 Consensus size: 24
8646 TAATAAATGA
8656 AAAAATTATATTTTTAAATAAAAAT
1 AAAAA-TATATTTTTAAATAAAAAT
8681 AAAAATATATTTTTAAAT-AAAAT
1 AAAAATATATTTTTAAATAAAAAT
8704 AAAAA-ATATATTTTAAAT
1 AAAAATATAT-TTTTAAAT
8722 TAAGTTAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.10
23 18 0.45
24 13 0.32
25 5 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
AAAAATATATTTTTAAATAAAAAT
Found at i:8737 original size:28 final size:26
Alignment explanation
Indices: 8701--8773 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 26
8691 TTTTAAATAA
*
8701 AATAAAAAATATATTTTAAATTAAGTT
1 AATATAAAA-ATATTTTAAATTAAGTT
8728 AATAGT-AAAATA-TTT-AA-TAAGTT
1 AATA-TAAAAATATTTTAAATTAAGTT
*
8751 AATATAAAAATATTTTAAGTTAA
1 AATATAAAAATATTTTAAATTAA
8774 TATATATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
22 1 0.03
23 16 0.41
24 5 0.13
25 4 0.10
26 6 0.15
27 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (26 bp):
AATATAAAAATATTTTAAATTAAGTT
Found at i:8778 original size:23 final size:23
Alignment explanation
Indices: 8721--8785 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
8711 ATATTTTAAA
*
8721 TTAAGTTAATA-GT-AAAATATT
1 TTAAGTTAATATATAAAAATATT
8742 TAATAAGTT-A-ATATAAAAATATT
1 T--TAAGTTAATATATAAAAATATT
8765 TTAAGTTAATATATATAAAAT
1 TTAAGTTAATATATA-AAAAT
8786 TATATTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
21 8 0.22
22 3 0.08
23 20 0.56
24 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (23 bp):
TTAAGTTAATATATAAAAATATT
Found at i:9880 original size:2 final size:2
Alignment explanation
Indices: 9875--9899 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9865 AAAAAAAGTA
9875 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9900 ATAACGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11716 original size:86 final size:84
Alignment explanation
Indices: 11614--11867 Score: 267
Period size: 84 Copynumber: 3.0 Consensus size: 84
11604 CGATAATTTT
* * *
11614 GTTGACAGATAGCCCTTCTTACCTTGAGTTATGCTGTAAATTTGATTTGTCTTTGAGCTGAGTAT
1 GTTGACAGATAGCCCTTCTTACCTTGAGTTATGCTGTAAA--TGATATGCCTTTGAGCTGAGTGT
*
11679 AATCGAACTCGAAGGTCTTTA
64 AGTCGAACTCGAAGGTCTTTA
* * * * *
11700 GTTGACAGATAGCCCTTCTCGA-CTTAAGTTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTA
1 GTTGACAGATAGCCCTTCT-TACCTTGAGTTATGCTGTAAATGATATGCCTTTGAGCTGAGTGTA
* * * *
11764 GTCAAAATCGAAGGTATTTT
65 GTCGAACTCGAAGGTCTTTA
* * * * * * * *
11784 GTTGGCAAATACCCCTTCTTGCCTTGAGCTATACTGCAAATGATATGCCCTTGAAGCTGAGTGTA
1 GTTGACAGATAGCCCTTCTTACCTTGAGTTATGCTGTAAATGATATGCCTTTG-AGCTGAGTGTA
*
11849 GTTGAACTCGAAGGTCTTT
65 GTCGAACTCGAAGGTCTTT
11868 GTGTTTCAAG
Statistics
Matches: 136, Mismatches: 29, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
84 74 0.54
85 25 0.18
86 36 0.26
87 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (84 bp):
GTTGACAGATAGCCCTTCTTACCTTGAGTTATGCTGTAAATGATATGCCTTTGAGCTGAGTGTAG
TCGAACTCGAAGGTCTTTA
Found at i:11943 original size:33 final size:33
Alignment explanation
Indices: 11865--11984 Score: 163
Period size: 33 Copynumber: 3.6 Consensus size: 33
11855 CTCGAAGGTC
* *
11865 TTTGTGTTTCAAGATAAA-TATTTTCAAAGGGTTTT
1 TTTGTGTTTCAAGAGAAACGA-TTTCAAA-GG-TTT
11900 TTTGTGTTTCAAGAGAAACGATTTCAAAAGG-TT
1 TTTGTGTTTCAAGAGAAACGATTTC-AAAGGTTT
*
11933 TTTGTTTTTCAAGAGAAACGATTTCAAAGGTTT
1 TTTGTGTTTCAAGAGAAACGATTTCAAAGGTTT
11966 TTTGTGTTTCAAGAGAAAC
1 TTTGTGTTTCAAGAGAAAC
11985 TGTCTTCGGG
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
32 5 0.06
33 46 0.59
35 23 0.29
36 4 0.05
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (33 bp):
TTTGTGTTTCAAGAGAAACGATTTCAAAGGTTT
Found at i:11968 original size:68 final size:66
Alignment explanation
Indices: 11859--11984 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 66
11849 GTTGAACTCG
* *
11859 AAGGTCTTTGTGTTTCAAGATAAATATTTTCAAAGGGTTTTTTTGTGTTTCAAGAGAAACGATTT
1 AAGGTCTTTGTGTTTCAAGAGAAAGATTTTCAAA-GG-TTTTTTGTGTTTCAAGAGAAACGATTT
11924 CAA
64 CAA
* *
11927 AAGGTTTTTGTTTTTCAAGAGAAACGA-TTTCAAAGGTTTTTTGTGTTTCAAGAGAAAC
1 AAGGTCTTTGTGTTTCAAGAGAAA-GATTTTCAAAGGTTTTTTGTGTTTCAAGAGAAAC
11985 TGTCTTCGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
66 22 0.42
67 2 0.04
68 28 0.53
69 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (66 bp):
AAGGTCTTTGTGTTTCAAGAGAAAGATTTTCAAAGGTTTTTTGTGTTTCAAGAGAAACGATTTCA
A
Found at i:12076 original size:67 final size:68
Alignment explanation
Indices: 11939--12088 Score: 180
Period size: 67 Copynumber: 2.2 Consensus size: 68
11929 GGTTTTTGTT
* * * **
11939 TTTCAAGAGAAACGATTTCAAAGGTTTTTTGTGTTTCAAGAGAAACTGTCTTCGGGGAGGTAAAA
1 TTTCAAGAGAAACGATTTCAAAGG--TTTGGTGTTTCAAGAGAAACTGTCTTCAGAGAGACAAAA
*
12004 TTTTG
64 CTTTG
12009 TTTCAAGAGAAAC-ATATTCAAAGG-TTGGTGTTTCAAGAGAAACTGTC-TCAAGAGAGACAAAA
1 TTTCAAGAGAAACGAT-TTCAAAGGTTTGGTGTTTCAAGAGAAACTGTCTTC-AGAGAGACAAAA
12071 CTTTG
64 CTTTG
*
12076 TTTCAAGGGAAAC
1 TTTCAAGAGAAAC
12089 TGTCTCAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
66 2 0.03
67 46 0.65
69 2 0.03
70 21 0.30
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.31
Consensus pattern (68 bp):
TTTCAAGAGAAACGATTTCAAAGGTTTGGTGTTTCAAGAGAAACTGTCTTCAGAGAGACAAAACT
TTG
Found at i:12088 original size:37 final size:37
Alignment explanation
Indices: 12037--12289 Score: 253
Period size: 36 Copynumber: 7.1 Consensus size: 37
12027 CAAAGGTTGG
12037 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* * *
12074 TGTTTCAAGGGAAACTGTCTCAAAAGAGA-AAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* *
12110 TGTTTCAAGAAAAACTGTCTTAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* * * * *
12147 AGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAA-TT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* *
12183 TGTTTCAAG-GAAAACATAT-TC-A-A-AG-----ATTT
1 TGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAACTT
* *
12212 TGTTTCAAGAGAAACTGTCTCAAGAGAAACAAAA-AT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* *
12248 TGTTTCAAGAGAAGCTGTCTCAAGAAAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
12285 TGTTT
1 TGTTT
12290 TGAGTATATT
Statistics
Matches: 174, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
28 3 0.02
29 17 0.10
30 2 0.01
31 1 0.01
32 1 0.01
33 2 0.01
35 2 0.01
36 77 0.44
37 69 0.40
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (37 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
Found at i:12097 original size:67 final size:68
Alignment explanation
Indices: 11967--12169 Score: 182
Period size: 73 Copynumber: 2.9 Consensus size: 68
11957 CAAAGGTTTT
* * ** * *
11967 TTGTGTTTCAAGAGAAACTGTCTTC-GGGGAGGTAAAATTTTGTTTCAAGAGAAACATAT-TCAA
1 TTGTGTTTCAAGAGAAACTGTC-TCAAGAGAGACAAAACTTTGTTTCAAGAGAAAC-TGTCTCAA
12030 AG-G-
64 AGAGA
*
12033 TTGGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAA
1 TT-GTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTC-AA
12098 AGAGAAAAAA
64 AGAG-----A
* * * * *
12108 TT-TGTTTCAAGAAAAACTGTCTTAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAA
1 TTGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAA
12170 GGGAGACGAA
Statistics
Matches: 113, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
66 6 0.05
67 46 0.41
68 4 0.04
69 1 0.01
72 2 0.02
73 52 0.46
75 2 0.02
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (68 bp):
TTGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAAG
AGA
Found at i:12135 original size:73 final size:73
Alignment explanation
Indices: 12037--12289 Score: 265
Period size: 73 Copynumber: 3.6 Consensus size: 73
12027 CAAAGGTTGG
* * *
12037 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAAAGAG
1 TGTTTCAAGAAAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAG
12102 AAAAAATT
66 AAAAAATT
* * * * *
12110 TGTTTCAAGAAAAACTGTCTTAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGAG
1 TGTTTCAAGAAAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAG
**
12175 ACGAAATT
66 AAAAAATT
* * *
12183 TGTTTCAAGGAAAACATAT-TC-A-A-AG-----ATTTTGTTTCAAGAGAAACTGTCTCAAGAGA
1 TGTTTCAAGAAAAAC-TGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGA
*
12239 -AACAAAAAT
65 GAA-AAAATT
* * *
12248 TGTTTCAAGAGAAGCTGTCTCAAGAAAGACAAAACTTTGTTT
1 TGTTTCAAGAAAAACTGTCTCAAGAGAGACAAAACTTTGTTT
12290 TGAGTATATT
Statistics
Matches: 143, Mismatches: 26, Indels: 22
0.75 0.14 0.12
Matches are distributed among these distances:
64 3 0.02
65 44 0.31
66 1 0.01
67 1 0.01
68 2 0.01
70 2 0.01
71 1 0.01
72 1 0.01
73 86 0.60
74 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (73 bp):
TGTTTCAAGAAAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAG
AAAAAATT
Found at i:14015 original size:11 final size:10
Alignment explanation
Indices: 13995--14044 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
13985 ATTGTTTTCT
13995 TTTTTCTTTA
1 TTTTTCTTTA
14005 TTTTTCATTTA
1 TTTTTC-TTTA
14016 TTTTTACTTT-
1 TTTTT-CTTTA
*
14026 TTCTTTTTTTA
1 TT-TTTCTTTA
14037 -TTTTCTTT
1 TTTTTCTTT
14045 TTCTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 6 0.18
10 12 0.35
11 15 0.44
12 1 0.03
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:14033 original size:6 final size:6
Alignment explanation
Indices: 13989--14071 Score: 55
Period size: 6 Copynumber: 13.7 Consensus size: 6
13979 ATGCGCATTG
* * * * *
13989 TTTTCT TTTT-T CTTTAT TTTTCAT TTAT-T TTTACT TTTTCT TTTTTT
1 TTTTCT TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTTTCT TTTTCT
*
14036 ATTTTCT TTTTCT TTTT-T TCTTTGT TTTTCT CTTTT
1 -TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT -TTTT
14072 TGTTCTTGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
5 9 0.15
6 36 0.60
7 15 0.25
ACGTcount: A:0.06, C:0.12, G:0.01, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:14044 original size:19 final size:19
Alignment explanation
Indices: 14012--14072 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
14002 TTATTTTTCA
14012 TTTATTTTTACTTTTTCTTTT
1 TTTA-TTTT-CTTTTTCTTTT
14033 TTTATTTTCTTTTTCTTTT
1 TTTATTTTCTTTTTCTTTT
*
14052 TTTCTTTGT-TTTTCTCTTTT
1 TTTATTT-TCTTTT-TCTTTT
14072 T
1 T
14073 GTTCTTGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 21 0.57
20 12 0.32
21 4 0.11
ACGTcount: A:0.05, C:0.11, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTATTTTCTTTTTCTTTT
Found at i:14051 original size:18 final size:17
Alignment explanation
Indices: 13989--14078 Score: 81
Period size: 18 Copynumber: 5.1 Consensus size: 17
13979 ATGCGCATTG
* *
13989 TTTTCTTTTTTCTTTAT
1 TTTTCTTTTTTTTTTCT
* *
14006 TTTTCATTTATTTTTACT
1 TTTTC-TTTTTTTTTTCT
14024 TTTTCTTTTTTTATTTTCT
1 TTTTC-TTTTTT-TTTTCT
*
14043 TTTTCTTTTTTTCTTTGT
1 TTTTCTTTTTTT-TTTCT
* *
14061 TTTTCTCTTTTTGTTCT
1 TTTTCTTTTTTTTTTCT
14078 T
1 T
14079 GATTGGATCT
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
17 10 0.17
18 39 0.66
19 10 0.17
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTCTTTTTTTTTTCT
Found at i:17241 original size:8 final size:8
Alignment explanation
Indices: 17223--17318 Score: 61
Period size: 8 Copynumber: 11.5 Consensus size: 8
17213 ATTTATATTC
17223 AAAAGTAAA
1 AAAAGT-AA
17232 AAAAGTAA
1 AAAAGTAA
17240 AAAAGT-A
1 AAAAGTAA
*
17247 AATAGTTGAA
1 AAAAG-T-AA
17257 AAAAGTAA
1 AAAAGTAA
* *
17265 AATATTGAA
1 AAAAGT-AA
*
17274 AAAAGTTGA
1 AAAAG-TAA
**
17283 AAAAGTGG
1 AAAAGTAA
*
17291 AAAAGTGA
1 AAAAGTAA
17299 AAAAGTGAA
1 AAAAGT-AA
17308 AAAAG-AA
1 AAAAGTAA
17315 AAAA
1 AAAA
17319 TGTATAGAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
7 11 0.15
8 30 0.42
9 24 0.34
10 6 0.08
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.16
Consensus pattern (8 bp):
AAAAGTAA
Found at i:17285 original size:9 final size:8
Alignment explanation
Indices: 17231--17310 Score: 65
Period size: 8 Copynumber: 9.6 Consensus size: 8
17221 TCAAAAGTAA
*
17231 AAAAAGTA
1 AAAAAGTG
17239 AAAAAGT-
1 AAAAAGTG
*
17246 AAATAGTTG
1 AAAAAG-TG
17255 AAAAAAGT-
1 -AAAAAGTG
*
17263 AAAATATTG
1 AAAA-AGTG
17272 AAAAAAGTTG
1 -AAAAAG-TG
17282 AAAAAGTG
1 AAAAAGTG
*
17290 GAAAAGTG
1 AAAAAGTG
17298 AAAAAGTG
1 AAAAAGTG
17306 AAAAA
1 AAAAA
17311 AGAAAAAATG
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
7 9 0.15
8 31 0.53
9 8 0.14
10 11 0.19
ACGTcount: A:0.64, C:0.00, G:0.19, T:0.17
Consensus pattern (8 bp):
AAAAAGTG
Found at i:17318 original size:17 final size:17
Alignment explanation
Indices: 17223--17318 Score: 83
Period size: 17 Copynumber: 5.7 Consensus size: 17
17213 ATTTATATTC
17223 AAAAGTAAAAAAAGT-AA
1 AAAAGT-AAAAAAGTGAA
*
17240 AAAAGT-AAATAGTTGAA
1 AAAAGTAAAAAAG-TGAA
* *
17257 AAAAGTAAAATATTGAA
1 AAAAGTAAAAAAGTGAA
* *
17274 AAAAGTTGAAAAAGTG-G
1 AAAAG-TAAAAAAGTGAA
*
17291 AAAAGTGAAAAAGTGAA
1 AAAAGTAAAAAAGTGAA
17308 AAAAG-AAAAAA
1 AAAAGTAAAAAA
17319 TGTATAGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
15 5 0.08
16 16 0.24
17 33 0.50
18 12 0.18
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.16
Consensus pattern (17 bp):
AAAAGTAAAAAAGTGAA
Found at i:25861 original size:18 final size:17
Alignment explanation
Indices: 25828--25861 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25818 TCATCTTTCT
*
25828 TAAATAAAATTACATTG
1 TAAATAAAAATACATTG
25845 TAAATAAAAATATCATT
1 TAAATAAAAATA-CATT
25862 ATTTTACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (17 bp):
TAAATAAAAATACATTG
Found at i:25992 original size:136 final size:136
Alignment explanation
Indices: 25748--26062 Score: 603
Period size: 136 Copynumber: 2.3 Consensus size: 136
25738 ATAGACAATG
25748 TTTTTAATATATTATTTAGAATTATAATTATTAAACTTATTCTTTATTTATATTATATTAATAAA
1 TTTTTAATATATTATTTAGAATTATAATTATTAAACTTATTCTTTATTTATATTATATTAATAAA
25813 TTTCATCATCTTTCTTAAATAAAATTACATTGTAAATAAAAATATCATTATTTTACATATAAAAG
66 TTTCATCATCTTTCTTAAATAAAATTACATTGTAAATAAAAATATCATTATTTTACATATAAAAG
*
25878 TAAATA
131 CAAATA
*
25884 TTTTTAATATATTATTTAGAATTATAATTATTAAACTTATTCTTTATTTATATTATATTAATCAA
1 TTTTTAATATATTATTTAGAATTATAATTATTAAACTTATTCTTTATTTATATTATATTAATAAA
25949 TTTCATCATCTTTCTTAAATAAAATTACATTGTAAATAAAAATATCATTATTTTACATATAAAAG
66 TTTCATCATCTTTCTTAAATAAAATTACATTGTAAATAAAAATATCATTATTTTACATATAAAAG
26014 CAAATA
131 CAAATA
*
26020 TTTTTAATATAGTATTTAGAATTATAATTATTAAACTTATTCT
1 TTTTTAATATATTATTTAGAATTATAATTATTAAACTTATTCT
26063 AATGGTTTAC
Statistics
Matches: 176, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 176 1.00
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.48
Consensus pattern (136 bp):
TTTTTAATATATTATTTAGAATTATAATTATTAAACTTATTCTTTATTTATATTATATTAATAAA
TTTCATCATCTTTCTTAAATAAAATTACATTGTAAATAAAAATATCATTATTTTACATATAAAAG
CAAATA
Found at i:25997 original size:18 final size:17
Alignment explanation
Indices: 25964--25997 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25954 TCATCTTTCT
*
25964 TAAATAAAATTACATTG
1 TAAATAAAAATACATTG
25981 TAAATAAAAATATCATT
1 TAAATAAAAATA-CATT
25998 ATTTTACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (17 bp):
TAAATAAAAATACATTG
Found at i:30564 original size:15 final size:15
Alignment explanation
Indices: 30534--30574 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
30524 TGTGCAAATC
30534 CGGGTACCCAGATTTT
1 CGGGTACCC-GATTTT
30550 CGGGTACCCGATTTT
1 CGGGTACCCGATTTT
30565 CGGGTACCCG
1 CGGGTACCCG
30575 GAACTTCCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.27
Consensus pattern (15 bp):
CGGGTACCCGATTTT
Found at i:30647 original size:15 final size:15
Alignment explanation
Indices: 30627--30680 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
30617 GATGTTACGA
30627 GTACCCGGTAATCGG
1 GTACCCGGTAATCGG
*
30642 GTACCC-GTATTTTGCGG
1 GTACCCGGTA--AT-CGG
30659 GTACCCGGTAATCGG
1 GTACCCGGTAATCGG
30674 GTACCCG
1 GTACCCG
30681 ATACCCAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 3 0.09
15 16 0.48
16 2 0.06
17 9 0.27
18 3 0.09
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (15 bp):
GTACCCGGTAATCGG
Found at i:30648 original size:32 final size:32
Alignment explanation
Indices: 30612--30680 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
30602 CCGTGTCCCG
30612 ACCCGGATGTTACGAGTACCCGGTAATCGGGT
1 ACCCGGATGTTACGAGTACCCGGTAATCGGGT
* * * *
30644 ACCCGTATTTTGCGGGTACCCGGTAATCGGGT
1 ACCCGGATGTTACGAGTACCCGGTAATCGGGT
30676 ACCCG
1 ACCCG
30681 ATACCCAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (32 bp):
ACCCGGATGTTACGAGTACCCGGTAATCGGGT
Found at i:34572 original size:2 final size:2
Alignment explanation
Indices: 34565--34593 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
34555 ATCAAATTAT
34565 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34594 TTTCCAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37336 original size:35 final size:36
Alignment explanation
Indices: 37270--37340 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
37260 TTCATTTAGG
37270 GGGGAATCGATACCCTCCCAGGGGGAATCTATTCCC
1 GGGGAATCGATACCCTCCCAGGGGGAATCTATTCCC
37306 GGGGAATCGATA-CC-CCCAGGGGGGAATCTATTCCC
1 GGGGAATCGATACCCTCCCA-GGGGGAATCTATTCCC
37341 CCTGCACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
34 4 0.12
35 18 0.53
36 12 0.35
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.18
Consensus pattern (36 bp):
GGGGAATCGATACCCTCCCAGGGGGAATCTATTCCC
Found at i:39807 original size:21 final size:21
Alignment explanation
Indices: 39781--39821 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
39771 CCGCGTAAAA
*
39781 ATGTCCCGAATGACCACATAG
1 ATGTCCCGAAGGACCACATAG
39802 ATGTCCCGAAGGACCACATA
1 ATGTCCCGAAGGACCACATA
39822 TAACATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.17
Consensus pattern (21 bp):
ATGTCCCGAAGGACCACATAG
Found at i:40500 original size:21 final size:22
Alignment explanation
Indices: 40469--40543 Score: 59
Period size: 21 Copynumber: 3.5 Consensus size: 22
40459 CTAGTCAATA
40469 TAAATATCTTACCGCTCTCTCG
1 TAAATATCTTACCGCTCTCTCG
* ** *
40491 TAAAT-TCTTACTAG-TCAAT-A
1 TAAATATCTTAC-CGCTCTCTCG
* *
40511 TAAATCTCTGACCGCTCTCTCG
1 TAAATATCTTACCGCTCTCTCG
40533 TAAAT-TCTTAC
1 TAAATATCTTAC
40544 TTTGGCGACT
Statistics
Matches: 39, Mismatches: 10, Indels: 9
0.67 0.17 0.16
Matches are distributed among these distances:
20 6 0.15
21 22 0.56
22 11 0.28
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (22 bp):
TAAATATCTTACCGCTCTCTCG
Found at i:40525 original size:42 final size:42
Alignment explanation
Indices: 40458--40544 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
40448 CCTTGATCTC
*
40458 ACTAGTCAATATAAATATCTTACCGCTCTCTCGTAAATTCTT
1 ACTAGTCAATATAAATATCTGACCGCTCTCTCGTAAATTCTT
*
40500 ACTAGTCAATATAAATCTCTGACCGCTCTCTCGTAAATTCTT
1 ACTAGTCAATATAAATATCTGACCGCTCTCTCGTAAATTCTT
40542 ACT
1 ACT
40545 TTGGCGACTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (42 bp):
ACTAGTCAATATAAATATCTGACCGCTCTCTCGTAAATTCTT
Found at i:40859 original size:17 final size:20
Alignment explanation
Indices: 40806--40854 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
40796 GTACCCATAA
40806 TATCGATACTACCCCTTAGG
1 TATCGATACTACCCCTTAGG
40826 TATCGATACTACCCCTTAGG
1 TATCGATACTACCCCTTAGG
*
40846 TATCAATAC
1 TATCGATAC
40855 CCCTTGAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (20 bp):
TATCGATACTACCCCTTAGG
Found at i:46328 original size:18 final size:20
Alignment explanation
Indices: 46282--46337 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 20
46272 TACAACGAAT
*
46282 AATAT-TAAATATATTTTTG
1 AATATATAAATATATTTTTA
46301 AATA-AT-AATA-A-TTTTA
1 AATATATAAATATATTTTTA
46317 AATATATAAATATTATTTTTA
1 AATATATAAATA-TATTTTTA
46338 GTAAACTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
16 8 0.27
17 3 0.10
18 8 0.27
19 5 0.17
20 1 0.03
21 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AATATATAAATATATTTTTA
Found at i:47015 original size:18 final size:19
Alignment explanation
Indices: 46975--47017 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
46965 TTGGTTCACA
*
46975 GAATATAAGATTACCAGTCG
1 GAATAAAAGATTACCAG-CG
*
46995 GAATAAAAGATTATCAG-G
1 GAATAAAAGATTACCAGCG
47013 GAATA
1 GAATA
47018 TGATTATTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
20 15 0.71
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.23
Consensus pattern (19 bp):
GAATAAAAGATTACCAGCG
Found at i:47239 original size:36 final size:36
Alignment explanation
Indices: 47168--47240 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
47158 GTTGGAAAAT
*
47168 ATTTATATATTTTCTTTAAAAAATTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
*
47204 ATTTATATAATTTT-TTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAATT-AAAATCATAAA
47240 A
1 A
47241 AGGTTTAGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 24 0.73
37 9 0.27
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
Found at i:49580 original size:14 final size:14
Alignment explanation
Indices: 49557--49608 Score: 79
Period size: 14 Copynumber: 3.7 Consensus size: 14
49547 TCTGTCTATA
*
49557 TGCAGAGATTT-TT
1 TGCAGGGATTTATT
49570 TCGCAGGGATTTATT
1 T-GCAGGGATTTATT
49585 TGCAGGGATTTATT
1 TGCAGGGATTTATT
49599 TGCAGGGATT
1 TGCAGGGATT
49609 ATTGCCCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
13 1 0.03
14 32 0.89
15 3 0.08
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.40
Consensus pattern (14 bp):
TGCAGGGATTTATT
Found at i:53136 original size:21 final size:22
Alignment explanation
Indices: 53094--53136 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
53084 CTTTCATGAT
* **
53094 TATTTTTATATTTTATTGAATA
1 TATTTTTATAATTTATAAAATA
53116 TATTTTT-TAATTTATAAAATA
1 TATTTTTATAATTTATAAAATA
53137 ACGAATTAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATTTTTATAATTTATAAAATA
Found at i:53773 original size:60 final size:60
Alignment explanation
Indices: 53680--53808 Score: 152
Period size: 60 Copynumber: 2.1 Consensus size: 60
53670 ACATGTCCCT
* * ** *
53680 AAACTATGACCCTCATTTTAAATTACTCCTTAAACTTTTAAATATTTTAATTTTATACCA
1 AAACTATGACCCTCACTCTAAATTACTCCTTAAACTTTTAAATATTCCAATTTCATACCA
** * * *
53740 AAACTATGACTCC-CACTCTAAATTTGTCCTTAAACTTTTGAATATTCCAATTTCATCCCC
1 AAACTATGAC-CCTCACTCTAAATTACTCCTTAAACTTTTAAATATTCCAATTTCATACCA
53800 AAACTATGA
1 AAACTATGA
53809 ATGTCATTCT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 56 0.97
61 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (60 bp):
AAACTATGACCCTCACTCTAAATTACTCCTTAAACTTTTAAATATTCCAATTTCATACCA
Found at i:56684 original size:23 final size:24
Alignment explanation
Indices: 56658--56724 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
56648 ATCTATGTGA
* * *
56658 TCCTTAGGGA-TATTTCTACATGG
1 TCCTTAGGGACAAATTCTACACGG
*
56681 TCCTTCGGGACAAATTCTACACGG
1 TCCTTAGGGACAAATTCTACACGG
56705 TCCTTTA-GGACAAATTCTAC
1 TCC-TTAGGGACAAATTCTAC
56725 GTGACACTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 9 0.24
24 26 0.70
25 2 0.05
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (24 bp):
TCCTTAGGGACAAATTCTACACGG
Found at i:56706 original size:24 final size:24
Alignment explanation
Indices: 56671--56724 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
56661 TTAGGGATAT
* *
56671 TTCTACATGGTCCTTCGGGACAAA
1 TTCTACACGGTCCTTCAGGACAAA
*
56695 TTCTACACGGTCCTTTAGGACAAA
1 TTCTACACGGTCCTTCAGGACAAA
56719 TTCTAC
1 TTCTAC
56725 GTGACACTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (24 bp):
TTCTACACGGTCCTTCAGGACAAA
Found at i:62746 original size:36 final size:36
Alignment explanation
Indices: 62694--62767 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
62684 CCTTCAGAGG
62694 TTAACTATCATTCAAAATAAATCTTATTTTTTGAAT
1 TTAACTATCATTCAAAATAAATCTTATTTTTTGAAT
*
62730 TTAATTATCATTCAAAATAAATCTTATTTTTTGAAT
1 TTAACTATCATTCAAAATAAATCTTATTTTTTGAAT
62766 TT
1 TT
62768 TATATGAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (36 bp):
TTAACTATCATTCAAAATAAATCTTATTTTTTGAAT
Found at i:64728 original size:29 final size:30
Alignment explanation
Indices: 64686--64757 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
64676 CCCGAAGGAC
*
64686 CTATCCAGAGGTCACAAAG-ACCCCGGTAA
1 CTATCCAGAGGTCACAAAGAACCCCGGCAA
* *
64715 CTATCCAGAGGTCATAAAGAACCTCGGCAA
1 CTATCCAGAGGTCACAAAGAACCCCGGCAA
* *
64745 CTGTCCATAGGTC
1 CTATCCAGAGGTC
64758 CCGACGAACC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 18 0.49
30 19 0.51
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (30 bp):
CTATCCAGAGGTCACAAAGAACCCCGGCAA
Found at i:65783 original size:20 final size:22
Alignment explanation
Indices: 65758--65815 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
65748 TTCCCCTTGA
65758 AGTGCATCGATGCATGC-T-AC
1 AGTGCATCGATGCATGCTTAAC
*
65778 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATGC-TTAAC
65801 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
65816 CTACCCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (22 bp):
AGTGCATCGATGCATGCTTAAC
Found at i:68063 original size:2 final size:2
Alignment explanation
Indices: 68052--68081 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
68042 ATTCTTTACA
68052 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
68082 GGAAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71254 original size:31 final size:31
Alignment explanation
Indices: 71206--71277 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
71196 TATTAAAATT
* *
71206 AAGACCAAACTGATAGAATATATAAGTAAC-A
1 AAGACTAAATTGATAGAATATATAAGT-ACTA
* *
71237 ATGACTAAATTGATAGAATATATATGTACTA
1 AAGACTAAATTGATAGAATATATAAGTACTA
71268 AAGACTAAAT
1 AAGACTAAAT
71278 ATATAATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 33 0.94
ACGTcount: A:0.51, C:0.10, G:0.12, T:0.26
Consensus pattern (31 bp):
AAGACTAAATTGATAGAATATATAAGTACTA
Found at i:72003 original size:51 final size:51
Alignment explanation
Indices: 71934--72274 Score: 391
Period size: 51 Copynumber: 6.7 Consensus size: 51
71924 ATTCACAATA
* * * *
71934 AAAAAAATGTAGCTCTTAACAAATACTTACACCAGTGTAAGTGAATAAAAT
1 AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
* *
71985 AAACAATTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
1 AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
** * * ** *
72036 AAACTAGTGTATCACTTAACACATACTTACACCTGTGCGAGTGGATAAAAT
1 AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
*
72087 AAAAAAAAGTGTAGCATTTAACACATAC-TACACCGGTGTAAGTGAATAAAAT
1 --AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
* * * * *
72139 AAAAAAGTGTAGCACTTGACACATATTTATACCGGTGTAAGTGGATAAAACAA
1 AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAAT-AAA-AT
* * * * **
72192 AAAAAAATGTAGCACTTAACGCATGC-TACATCAATGTAAGTGAATAAAAT
1 AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
*
72242 AAAAAA-TGTAACACTTAACACATACTTACACCG
1 AAAAAAGTGTAGCACTTAACACATACTTACACCG
72275 ATATAAGTAT
Statistics
Matches: 242, Mismatches: 42, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
49 16 0.07
50 35 0.14
51 110 0.45
52 37 0.15
53 44 0.18
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (51 bp):
AAAAAAGTGTAGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
Found at i:72136 original size:103 final size:102
Alignment explanation
Indices: 71948--72273 Score: 404
Period size: 103 Copynumber: 3.2 Consensus size: 102
71938 AAATGTAGCT
* * * *
71948 CTTAACAAATACTTACACCAGTGTAAGTGAATAAAAT--AAACAATTGTAGCACTTAACACATAC
1 CTTAACACATACTTACACCAGTGTAAGTGGATAAAATAAAAAAAAATGTAGCACTTAACACATAC
* *
72011 TTACACCGGTGTAAGTGAATAAAATAAACTAGTGTATCA
66 -TACACCGGTGTAAGTGAATAAAATAAA-AAGTGTAACA
* ** * *
72050 CTTAACACATACTTACACCTGTGCGAGTGGATAAAATAAAAAAAAGTGTAGCATTTAACACATAC
1 CTTAACACATACTTACACCAGTGTAAGTGGATAAAATAAAAAAAAATGTAGCACTTAACACATAC
*
72115 TACACCGGTGTAAGTGAATAAAATAAAAAAGTGTAGCA
66 TACACCGGTGTAAGTGAATAAAAT-AAAAAGTGTAACA
* * * * * * *
72153 CTTGACACATATTTATACCGGTGTAAGTGGATAAAACAAAAAAAAATGTAGCACTTAACGCATGC
1 CTTAACACATACTTACACCAGTGTAAGTGGATAAAATAAAAAAAAATGTAGCACTTAACACATAC
* ** *
72218 TACATCAATGTAAGTGAATAAAATAAAAAATGTAACA
66 TACACCGGTGTAAGTGAATAAAATAAAAAGTGTAACA
72255 CTTAACACATACTTACACC
1 CTTAACACATACTTACACC
72274 GATATAAGTA
Statistics
Matches: 192, Mismatches: 29, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
102 59 0.31
103 107 0.56
104 26 0.14
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.25
Consensus pattern (102 bp):
CTTAACACATACTTACACCAGTGTAAGTGGATAAAATAAAAAAAAATGTAGCACTTAACACATAC
TACACCGGTGTAAGTGAATAAAATAAAAAGTGTAACA
Found at i:72246 original size:154 final size:153
Alignment explanation
Indices: 71934--72274 Score: 402
Period size: 154 Copynumber: 2.2 Consensus size: 153
71924 ATTCACAATA
* * * *
71934 AAAAAAATGTAGC-TCTTAACAAATACTTACACCAGTGTAAGTGAATAAAATAAACAATTGTAGC
1 AAAAAAATGTAGCAT-TTAACACATACTTACACCGGTGTAAGTGAATAAAATAAAAAAGTGTAGC
* ** * *
71998 ACTTAACACATACTTACACCGGTGTAAGTGAATAAAATAAACTAGTGTATCACTTAACACATACT
65 ACTTAACACATACTTACACCGGTGTAAGTGAATAAAAAAAAAAAATGTAGCACTTAACACATACT
** * *
72063 TACACCTGTGCGAGTGGATAAAAT
130 TACACCAATGCAAGTGAATAAAAT
72087 AAAAAAAAGTGTAGCATTTAACACATAC-TACACCGGTGTAAGTGAATAAAATAAAAAAGTGTAG
1 -AAAAAAA-TGTAGCATTTAACACATACTTACACCGGTGTAAGTGAATAAAATAAAAAAGTGTAG
* * * * *
72151 CACTTGACACATATTTATACCGGTGTAAGTGGATAAAACAAAAAAAAATGTAGCACTTAACGCAT
64 CACTTAACACATACTTACACCGGTGTAAGTGAAT-AAA-AAAAAAAAATGTAGCACTTAACACAT
* * *
72216 GC-TACATCAATGTAAGTGAATAAAAT
127 ACTTACACCAATGCAAGTGAATAAAAT
* *
72242 -AAAAAATGTAACACTTAACACATACTTACACCG
1 AAAAAAATGTAGCATTTAACACATACTTACACCG
72275 ATATAAGTAT
Statistics
Matches: 159, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
152 17 0.11
153 13 0.08
154 70 0.44
155 37 0.23
156 22 0.14
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (153 bp):
AAAAAAATGTAGCATTTAACACATACTTACACCGGTGTAAGTGAATAAAATAAAAAAGTGTAGCA
CTTAACACATACTTACACCGGTGTAAGTGAATAAAAAAAAAAAATGTAGCACTTAACACATACTT
ACACCAATGCAAGTGAATAAAAT
Found at i:72485 original size:12 final size:12
Alignment explanation
Indices: 72468--72495 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
72458 AAATATAATA
72468 AATTATAAATTT
1 AATTATAAATTT
72480 AATTATAAATTT
1 AATTATAAATTT
72492 AATT
1 AATT
72496 TATTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AATTATAAATTT
Found at i:72770 original size:19 final size:19
Alignment explanation
Indices: 72727--72770 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
72717 AAATGACCAA
* **
72727 CAAATTCGCAACCCGGTCT
1 CAAATTCGCAACACGAACT
72746 CAAATTCGCAACACGAACT
1 CAAATTCGCAACACGAACT
*
72765 CCAATT
1 CAAATT
72771 TCGTAACCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20
Consensus pattern (19 bp):
CAAATTCGCAACACGAACT
Found at i:72891 original size:21 final size:20
Alignment explanation
Indices: 72867--72939 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
72857 ATGCGTTTGC
*
72867 CAAAATCGCAACACTGAATTT
1 CAAATTCGCAACAC-GAATTT
* *
72888 CAAATTCGCAACTCGATTTT
1 CAAATTCGCAACACGAATTT
*
72908 CGAATTCGCAACACGAATTT
1 CAAATTCGCAACACGAATTT
*
72928 -AATTTCGCAACA
1 CAAATTCGCAACA
72940 GGTTTTAGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 10 0.23
20 22 0.50
21 12 0.27
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (20 bp):
CAAATTCGCAACACGAATTT
Found at i:75511 original size:12 final size:12
Alignment explanation
Indices: 75494--75534 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
75484 AGCAAAAGGA
*
75494 AATCAAAATCGC
1 AATCAAAATCAC
*
75506 AATCAAAATCAA
1 AATCAAAATCAC
*
75518 AATCAAAATCCC
1 AATCAAAATCAC
75530 AATCA
1 AATCA
75535 CAACCGGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.56, C:0.24, G:0.02, T:0.17
Consensus pattern (12 bp):
AATCAAAATCAC
Found at i:75515 original size:6 final size:6
Alignment explanation
Indices: 75493--75527 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
75483 AAGCAAAAGG
* *
75493 AAATCA AAATCG CAATCA AAATCA AAATCA AAATC
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATC
75528 CCAATCACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.60, C:0.20, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATCA
Found at i:76014 original size:20 final size:20
Alignment explanation
Indices: 75941--76007 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
75931 TCGCAATGCA
*
75941 AATTTGACTTTCGTGTTGCG
1 AATTTGACTTTCGCGTTGCG
** *
75961 AATTTGACTTTAACGTTGCA
1 AATTTGACTTTCGCGTTGCG
75981 AATTTGACTTTCGCGTTGCG
1 AATTTGACTTTCGCGTTGCG
76001 AATTTGA
1 AATTTGA
76008 ATATCGCAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (20 bp):
AATTTGACTTTCGCGTTGCG
Found at i:76190 original size:64 final size:64
Alignment explanation
Indices: 76111--76268 Score: 289
Period size: 64 Copynumber: 2.5 Consensus size: 64
76101 TTGAATAAGC
76111 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTA
* *
76175 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTA
76239 AACAAATCAACTTTTACAAATCAATGTAAA
1 AACAAATCAACTTTTACAAATCAAT-TAAA
76269 ATTCAATTAA
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
64 87 0.96
65 4 0.04
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.30
Consensus pattern (64 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTA
Found at i:77655 original size:21 final size:21
Alignment explanation
Indices: 77630--77744 Score: 97
Period size: 21 Copynumber: 5.5 Consensus size: 21
77620 GTGAATCGGG
*
77630 CTCTTGAACGGTGGGAGAGAC
1 CTCTTGAACGGTGGGAGGGAC
* * ** *
77651 ATCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGAC
* *
77672 CTCTTGAATGGTGGGAGGGGC
1 CTCTTGAACGGTGGGAGGGAC
*
77693 CTCTTGAACGGTAGGAGGGGA-
1 CTCTTGAACGGTGGGA-GGGAC
* * *
77714 CTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGGTGGGAGGGAC
*
77735 CTCTTTAACG
1 CTCTTGAACG
77745 ATAGGAGGCG
Statistics
Matches: 73, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
20 3 0.04
21 67 0.92
22 3 0.04
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.22
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGAC
Found at i:77712 original size:42 final size:42
Alignment explanation
Indices: 77630--77765 Score: 148
Period size: 42 Copynumber: 3.2 Consensus size: 42
77620 GTGAATCGGG
* * * *
77630 CTCTTGAACGGTGGGAGAGACATCTTGAACGAT-GACAGGGGC
1 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATAG-GAGGGGC
* * *
77672 CTCTTGAATGGTGGGAGGGGCCTCTTGAACGGTAGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATAGGAGGGGC
* * * *
77714 CTCTTGAACGATGAGAGGGGCCTCTTTAACGATAGGAGGCGC
1 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATAGGAGGGGC
*
77756 CTCTTAAACG
1 CTCTTGAACG
77766 ATGAAAGGTG
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 77 0.99
43 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATAGGAGGGGC
Found at i:77745 original size:21 final size:21
Alignment explanation
Indices: 77652--77769 Score: 123
Period size: 21 Copynumber: 5.6 Consensus size: 21
77642 GGGAGAGACA
*
77652 TCTTGAACGATGACAGGGGCC
1 TCTTGAACGATGAGAGGGGCC
* * *
77673 TCTTGAATGGTGGGAGGGGCC
1 TCTTGAACGATGAGAGGGGCC
* *
77694 TCTTGAACGGT-AGGAGGGGAC
1 TCTTGAACGATGA-GAGGGGCC
77715 TCTTGAACGATGAGAGGGGCC
1 TCTTGAACGATGAGAGGGGCC
* *
77736 TCTTTAACGAT-AGGAGGCGCC
1 TCTTGAACGATGA-GAGGGGCC
*
77757 TCTTAAACGATGA
1 TCTTGAACGATGA
77770 AAGGTGCACT
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
20 1 0.01
21 78 0.96
22 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.22
Consensus pattern (21 bp):
TCTTGAACGATGAGAGGGGCC
Found at i:77752 original size:63 final size:63
Alignment explanation
Indices: 77630--77765 Score: 175
Period size: 63 Copynumber: 2.2 Consensus size: 63
77620 GTGAATCGGG
* * * * *
77630 CTCTTGAACGGTGGGAGAGACATCTTGAACGATGACAGGGGCCTCTTGAATGGTGGGAGGGGC
1 CTCTTGAACGGTAGGAGAGACATCTTGAACGATGACAGGGGCCTCTTGAACGATAGGAGGCGC
* * *
77693 CTCTTGAACGGTAGGAGGGGAC-TCTTGAACGATGAGAGGGGCCTCTTTAACGATAGGAGGCGC
1 CTCTTGAACGGTAGGA-GAGACATCTTGAACGATGACAGGGGCCTCTTGAACGATAGGAGGCGC
*
77756 CTCTTAAACG
1 CTCTTGAACG
77766 ATGAAAGGTG
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 59 0.94
64 4 0.06
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (63 bp):
CTCTTGAACGGTAGGAGAGACATCTTGAACGATGACAGGGGCCTCTTGAACGATAGGAGGCGC
Found at i:77945 original size:4 final size:4
Alignment explanation
Indices: 77913--77962 Score: 55
Period size: 4 Copynumber: 12.5 Consensus size: 4
77903 GGGCCACTGA
* * * * *
77913 AAAT AAAT TAAT ACAT AAAG CAGT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
77961 AA
1 AA
77963 TGCCGAAAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:79903 original size:20 final size:21
Alignment explanation
Indices: 79880--79925 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
79870 AAACTTAAAT
79880 TCGCAAT-GCGAAAATGAAAA
1 TCGCAATCGCGAAAATGAAAA
*
79900 TCGC-ATCGCGAACATGAAAA
1 TCGCAATCGCGAAAATGAAAA
79920 TCGCAA
1 TCGCAA
79926 CGCTAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 2 0.09
20 20 0.87
21 1 0.04
ACGTcount: A:0.43, C:0.22, G:0.20, T:0.15
Consensus pattern (21 bp):
TCGCAATCGCGAAAATGAAAA
Found at i:79980 original size:20 final size:20
Alignment explanation
Indices: 79938--79980 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
79928 CTAAACTAAA
* * *
79938 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGAATTTAAGT
*
79958 TTCGTGTTGTGAATTTAAGT
1 TTCGTGTTGCGAATTTAAGT
79978 TTC
1 TTC
79981 AAAAATTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.12, G:0.21, T:0.53
Consensus pattern (20 bp):
TTCGTGTTGCGAATTTAAGT
Found at i:80331 original size:22 final size:22
Alignment explanation
Indices: 80305--80348 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
80295 AGATAGAGAT
*
80305 AGACGGATTTCGTCGGAGATGA
1 AGACGAATTTCGTCGGAGATGA
80327 AGACGAATTTCGTCGGAGATGA
1 AGACGAATTTCGTCGGAGATGA
80349 GGACAGATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (22 bp):
AGACGAATTTCGTCGGAGATGA
Found at i:80504 original size:20 final size:20
Alignment explanation
Indices: 80479--80577 Score: 135
Period size: 20 Copynumber: 5.0 Consensus size: 20
80469 ATAAACGCAC
*
80479 TTTGACTTCTGTGTTGCGAA
1 TTTGACTTATGTGTTGCGAA
*
80499 TTTGACTTATGAGTTGCGAA
1 TTTGACTTATGTGTTGCGAA
* *
80519 TTTGACTTCTGTGTTACGAA
1 TTTGACTTATGTGTTGCGAA
* *
80539 TTTAACTTATGTGTTGAGAA
1 TTTGACTTATGTGTTGCGAA
*
80559 TTTGACTTTTGTGTTGCGA
1 TTTGACTTATGTGTTGCGA
80578 TTTACAAATT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.20, C:0.11, G:0.23, T:0.45
Consensus pattern (20 bp):
TTTGACTTATGTGTTGCGAA
Found at i:80589 original size:20 final size:20
Alignment explanation
Indices: 80566--80617 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
80556 GAATTTGACT
*
80566 TTTGTGTTGCGATTTACAAA
1 TTTGCGTTGCGATTTACAAA
*
80586 TTTGCGTTGCGATTTACATA
1 TTTGCGTTGCGATTTACAAA
*
80606 TTCGCGTTGCGA
1 TTTGCGTTGCGA
80618 ATTTGAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42
Consensus pattern (20 bp):
TTTGCGTTGCGATTTACAAA
Found at i:80638 original size:21 final size:21
Alignment explanation
Indices: 80614--80659 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
80604 TATTCGCGTT
80614 GCGAATTT-GAAAAATCGCAAC
1 GCGAATTTAG-AAAATCGCAAC
*
80635 GCGAATTTAGAAAATCGCAAT
1 GCGAATTTAGAAAATCGCAAC
80656 GCGA
1 GCGA
80660 TTCACATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (21 bp):
GCGAATTTAGAAAATCGCAAC
Found at i:80909 original size:16 final size:15
Alignment explanation
Indices: 80857--80910 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
80847 TATTTTTGTG
*
80857 TAAAATTA-AAATATT
1 TAAAATTATAAA-ATA
*
80872 TAAAATTATAAATTA
1 TAAAATTATAAAATA
80887 TATAAATTATAAAATA
1 TA-AAATTATAAAATA
80903 GTAAAATT
1 -TAAAATT
80911 TATTAGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 11 0.33
16 20 0.61
17 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (15 bp):
TAAAATTATAAAATA
Found at i:82236 original size:60 final size:60
Alignment explanation
Indices: 82126--82238 Score: 136
Period size: 60 Copynumber: 1.9 Consensus size: 60
82116 TATAAGATAC
* * * * *
82126 TACTTTTTTGAGTCTATTGACTATTAAAAATTACACAATGATCCTCCGACTATAGGAAGT
1 TACTTTGTTGAGTCCATCGACTATTAAAAATTACAAAATGATCATCCGACTATAGGAAGT
* * * * *
82186 TACTTTGTTGAGTCCATCGACTATTAAAAGTTATAAAATTATTATTCGACTAT
1 TACTTTGTTGAGTCCATCGACTATTAAAAATTACAAAATGATCATCCGACTAT
82239 TCTTTATGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 43 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (60 bp):
TACTTTGTTGAGTCCATCGACTATTAAAAATTACAAAATGATCATCCGACTATAGGAAGT
Done.