genome.fa.s4272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004272.1 Hibiscus syriacus cultivar Beakdansim tig00009366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168402

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12311--12354	18	2.4	19	77	11	56	50	0	0	50	1.00
18975--19104	67	2.0	64	93	4	224	21	10	29	39	1.86
20178--20205	6	4.7	6	100	0	56	71	0	0	28	0.86
20336--20391	22	2.5	21	75	16	51	30	8	1	58	1.39
20484--20518	17	2.1	17	89	5	54	60	0	2	37	1.12
21965--22011	18	2.4	20	75	10	53	53	4	4	38	1.40
21993--22040	12	3.8	12	76	17	53	56	2	0	41	1.11
22023--22128	47	2.2	47	83	1	131	46	5	3	44	1.45
25825--25873	22	2.2	22	100	0	98	36	0	22	40	1.54
26931--26976	22	2.1	21	88	4	65	21	6	13	58	1.57
28350--28394	12	3.8	12	82	11	65	62	0	2	35	1.08
28345--28392	24	2.0	24	100	0	96	58	0	4	37	1.18
34119--34148	2	15.0	2	100	0	60	0	0	50	50	1.00
35254--35668	209	2.0	206	97	2	787	38	19	16	26	1.92
36529--36642	57	2.0	57	94	3	203	40	6	12	41	1.67
39289--39343	24	2.3	24	82	14	62	45	1	1	50	1.22
39471--39502	2	16.0	2	100	0	64	50	0	0	50	1.00
39581--39619	14	2.8	14	88	0	60	35	2	2	58	1.25
45510--45555	24	1.9	24	95	0	83	43	21	4	30	1.72
51737--51841	46	2.3	46	93	0	174	33	28	19	19	1.96
52611--52648	20	1.9	20	94	0	67	23	26	18	31	1.97
54366--54392	4	6.8	4	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55278--55484	30	6.9	30	98	0	405	30	23	22	23	1.99
59823--60029	30	6.9	30	100	0	414	30	23	23	23	1.99
62831--62880	18	2.7	19	82	14	61	28	4	0	68	1.08
62863--63127	141	1.9	137	92	3	440	26	10	4	58	1.52
74609--75584	105	9.3	105	95	0	1700	32	25	18	23	1.97
77123--77391	142	1.9	141	94	1	477	26	10	4	58	1.51
84526--84659	60	2.2	60	84	5	164	38	14	11	35	1.84
84570--84852	141	2.0	141	96	0	521	42	12	10	33	1.77
85641--85703	24	2.6	24	85	9	76	28	17	23	30	1.97
85664--85715	24	2.2	24	85	0	68	28	19	19	32	1.96
96574--96655	15	5.5	15	88	2	121	37	7	19	35	1.80
96574--96655	30	2.8	30	94	1	139	37	7	19	35	1.80
96568--96655	45	2.0	44	93	2	149	39	6	20	32	1.79
96638--96687	20	2.5	20	100	0	100	40	10	16	34	1.81
96856--96954	28	3.4	29	81	12	98	52	2	1	44	1.19
96968--97011	22	2.0	23	86	4	63	54	0	0	45	0.99
96972--97028	21	2.6	22	81	10	64	52	0	0	47	1.00
97217--97337	42	2.9	42	92	1	197	47	18	18	16	1.84
98894--98971	31	2.5	31	85	0	102	32	15	28	24	1.95
99301--99348	20	2.5	19	83	12	62	35	8	0	56	1.30
105907--105976	31	2.3	31	90	2	106	31	28	17	22	1.96
107958--108079	41	3.2	41	65	23	120	20	10	24	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107950--108109	73	2.2	73	100	0	320	20	11	23	45	1.83
109303--109327	13	1.9	13	100	0	50	0	8	8	84	0.79
109705--109763	31	1.9	31	83	10	77	47	23	11	16	1.80
111786--111820	2	17.5	2	93	0	61	0	54	0	45	0.99
116790--116881	44	2.1	44	93	0	157	34	9	32	22	1.87
118631--118656	2	13.0	2	100	0	52	50	0	0	50	1.00
120285--120432	60	2.5	62	81	5	178	34	22	4	38	1.73
130766--130843	32	2.4	34	76	10	99	34	8	0	56	1.31
132191--132327	23	6.0	23	85	0	193	28	25	27	18	1.98
132199--132328	46	2.8	46	98	0	251	27	26	28	17	1.98
133257--133301	23	2.0	23	86	0	63	26	28	24	20	1.99
134205--134246	2	21.0	2	95	0	75	47	2	0	50	1.14
140100--140176	24	3.2	24	85	10	79	40	12	10	36	1.78
140113--140184	24	3.0	24	91	0	117	38	12	12	36	1.81
140293--140333	20	2.0	20	86	9	57	51	0	4	43	1.23
140825--140867	2	21.5	2	100	0	86	48	0	0	51	1.00
144536--144590	27	2.0	27	96	0	101	38	16	14	30	1.89
146687--146769	31	2.7	32	84	3	100	37	10	14	37	1.81
146720--146791	31	2.3	31	83	4	83	43	12	9	34	1.76
149428--149891	110	4.4	104	85	8	564	16	12	14	55	1.69
149507--149891	102	3.7	102	90	3	558	16	12	15	55	1.69
159007--159046	20	2.0	20	95	0	71	45	12	5	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159060--159098	20	2.0	20	89	0	60	41	15	5	38	1.69
161308--161347	20	2.0	20	100	0	80	45	10	5	40	1.60
161361--161399	20	2.0	20	89	0	60	41	15	5	38	1.69
167435--167488	27	2.0	27	96	0	99	22	5	3	68	1.26

Tables:   1

The End!