genome.fa.s4275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004275.1 Hibiscus syriacus cultivar Beakdansim tig00009371_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121830

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850--882	16	2.1	16	88	11	50	57	3	9	30	1.45
3081--3123	20	2.2	20	83	8	52	58	0	0	41	0.98
14195--14302	38	2.9	36	72	20	98	28	13	19	37	1.90
15680--15721	2	22.0	2	85	9	61	50	0	0	50	1.00
15667--15713	22	2.1	23	84	7	62	53	0	2	44	1.12
19019--19043	3	8.3	3	100	0	50	32	0	0	68	0.90
20906--20954	24	2.0	24	84	7	64	44	18	2	34	1.61
22505--22559	24	2.3	24	90	0	83	23	25	21	29	1.99
23749--23809	23	2.7	23	84	0	86	27	26	26	19	1.99
26528--26557	15	2.0	15	93	0	51	6	56	13	23	1.60
26881--27131	140	1.8	132	82	8	315	29	13	20	36	1.91
27259--27321	28	2.2	30	91	5	103	30	0	14	55	1.39
30394--30466	33	2.2	33	82	2	85	38	4	12	45	1.61
30448--30498	24	2.2	22	86	6	66	49	3	3	43	1.39
30522--30552	16	1.9	16	93	0	53	48	0	9	41	1.36
31660--31722	23	3.0	22	78	15	62	58	1	3	36	1.23
33330--33389	11	5.5	11	69	11	52	5	38	0	56	1.21
33349--33386	17	2.2	18	90	4	60	7	39	0	52	1.31
33606--33669	29	2.2	29	88	0	92	23	34	25	17	1.96
35186--35244	14	4.1	14	75	12	57	62	16	8	11	1.52
35180--35232	23	2.2	24	86	3	72	60	18	9	11	1.57
35217--35259	16	2.9	15	83	13	54	62	13	9	13	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35189--35259	29	2.5	29	81	4	83	63	16	8	11	1.51
36660--36688	2	14.5	2	100	0	58	51	0	0	48	1.00
47239--47272	11	3.1	11	86	0	50	82	0	0	17	0.67
47240--47272	14	2.5	13	90	9	50	84	0	0	15	0.61
50356--50399	9	4.6	9	78	15	52	18	65	2	13	1.36
50361--50406	21	2.2	21	96	0	83	17	60	4	17	1.51
50403--50438	12	3.0	12	87	0	54	27	41	13	16	1.87
51043--51073	15	2.1	15	93	0	53	54	0	0	45	0.99
55096--55134	2	19.5	2	100	0	78	48	0	0	51	1.00
57964--58022	20	3.1	18	82	9	64	64	8	16	10	1.48
60568--61030	114	4.3	107	76	13	437	31	2	11	54	1.51
60303--61030	109	6.8	107	71	15	432	31	2	11	53	1.52
60343--61030	321	2.1	321	86	5	935	31	2	11	53	1.52
63142--63264	63	2.0	63	83	3	158	45	16	3	34	1.63
65638--65674	10	3.8	10	92	7	67	10	21	32	35	1.88
65638--65698	9	6.4	9	77	9	59	14	26	27	31	1.95
65638--65698	19	3.2	19	84	6	79	14	26	27	31	1.95
65695--65749	5	10.8	5	77	11	58	23	54	18	3	1.59
65696--65732	19	1.9	19	94	0	65	27	59	13	0	1.35
65719--65756	17	2.2	17	100	0	76	18	47	23	10	1.79
72802--72874	20	3.7	19	83	8	92	13	24	31	30	1.94
72802--72880	10	8.1	9	79	10	77	13	26	30	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72802--72874	30	2.4	30	84	6	94	13	24	31	30	1.94
72877--72926	5	9.8	5	79	12	57	24	54	18	4	1.61
72868--72927	19	3.3	19	79	6	70	21	50	21	6	1.72
72878--72904	14	1.9	14	100	0	54	25	59	14	0	1.36
72876--72933	17	3.3	17	85	4	71	22	50	18	8	1.74
75440--75475	17	2.1	17	89	0	54	77	2	0	19	0.88
75487--75525	16	2.4	16	91	4	60	46	2	7	43	1.46
75521--75554	3	11.7	3	87	6	52	35	2	0	61	1.11
75521--75554	17	2.0	17	94	0	59	35	2	0	61	1.11
75580--75694	46	2.5	46	89	0	176	45	9	2	42	1.50
75839--75870	17	1.9	17	93	6	57	53	0	6	40	1.26
79389--79421	17	1.9	17	88	11	50	33	3	15	48	1.60
80291--80319	15	1.9	15	100	0	58	20	37	20	20	1.94
84903--84931	15	1.9	15	100	0	58	20	37	20	20	1.94
94694--94720	9	3.0	9	100	0	54	22	11	11	55	1.66
96080--96174	49	1.9	49	82	4	120	20	18	27	33	1.96
97867--97909	15	2.7	16	85	10	61	16	25	25	32	1.96
102564--102624	20	3.3	20	77	22	55	44	0	1	54	1.10
102564--102627	16	4.0	16	80	8	76	45	0	1	53	1.10
109258--109339	22	3.7	22	81	0	101	20	19	17	42	1.89
110246--110307	21	3.0	21	87	0	88	24	16	25	33	1.95
110265--110326	21	3.1	20	82	13	67	29	16	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110570--110613	18	2.4	18	96	0	79	43	6	22	27	1.78
113272--113313	22	1.9	22	95	0	75	26	11	16	45	1.82
114082--114132	20	2.5	20	96	0	93	21	33	25	19	1.97
117954--117986	16	2.0	17	94	5	59	72	0	0	27	0.85

Tables:   1

The End!