genome.fa.s4276.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004276.1 Hibiscus syriacus cultivar Beakdansim tig00009373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124863

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572--1948	185	2.1	181	94	4	677	22	12	18	45	1.83
1572--1946	92	4.1	93	95	4	683	22	12	18	45	1.83
1990--2117	19	7.3	19	73	19	116	45	28	17	8	1.78
2028--2117	32	2.8	33	94	1	155	44	28	18	7	1.78
2113--2246	19	7.6	19	76	18	137	10	19	23	46	1.81
2135--2191	14	3.7	14	77	20	60	8	21	24	45	1.80
2118--2246	33	3.8	33	89	5	177	10	18	24	47	1.79
4046--4118	38	1.9	38	97	0	137	28	1	16	53	1.51
4041--4105	19	3.4	19	64	8	51	24	1	15	58	1.46
4100--4135	14	2.6	14	95	0	63	33	0	22	44	1.53
4238--4339	19	5.6	19	84	13	151	44	17	23	14	1.86
4368--4693	19	18.4	19	80	15	396	13	21	17	47	1.82
4346--4665	52	6.0	52	93	4	541	14	21	16	46	1.83
4368--4693	71	4.6	72	81	13	380	13	21	17	47	1.82
4346--4665	161	2.0	157	93	3	543	14	21	16	46	1.83
4387--4693	33	8.8	33	79	12	271	13	21	17	47	1.82
7184--7230	24	2.0	24	87	8	69	38	21	14	25	1.92
7901--8269	20	18.5	20	85	4	449	20	18	26	34	1.95
10880--10944	31	2.1	32	85	8	89	33	7	23	35	1.83
11541--11588	18	2.7	18	81	12	62	27	22	8	41	1.82
27979--28044	33	2.0	33	90	0	105	45	1	18	34	1.59
28837--28985	31	4.8	30	75	14	126	32	8	2	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28967--28996	13	2.2	14	94	5	53	46	0	0	53	1.00
29027--29100	29	2.8	24	78	20	85	55	1	6	36	1.35
29043--29343	29	9.8	29	71	17	157	53	1	6	37	1.40
29035--29371	31	11.0	31	72	14	127	53	1	7	37	1.39
29216--29373	61	2.6	59	78	14	180	55	1	6	36	1.35
29234--29343	28	3.7	29	77	21	104	54	1	6	37	1.37
29234--29373	59	2.4	57	81	12	167	55	1	7	35	1.36
32226--32281	27	2.1	26	83	3	67	53	1	5	39	1.34
32243--32282	13	3.0	13	82	7	53	52	0	10	37	1.35
40684--40745	31	2.2	28	81	16	74	17	24	29	29	1.97
42875--42931	30	1.9	30	92	0	96	29	10	8	50	1.67
43114--43209	28	3.3	29	81	7	88	20	15	5	58	1.57
43108--43198	28	3.2	28	83	7	94	19	14	6	59	1.57
43128--43200	28	2.6	29	84	8	96	21	10	5	61	1.49
43128--43215	29	3.1	28	81	6	97	21	12	5	60	1.53
45356--45393	17	2.3	17	90	4	60	47	0	2	50	1.15
45558--45628	29	2.4	29	85	2	88	33	2	11	52	1.52
45698--45767	29	2.4	29	90	2	104	30	2	14	52	1.55
45645--45911	127	2.1	126	86	2	358	32	7	14	46	1.71
45826--45882	29	2.0	29	92	0	96	33	8	15	42	1.78
46545--46612	29	2.3	29	80	7	66	29	8	23	38	1.85
46890--46931	18	2.3	18	100	0	84	26	11	16	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58556--58735	65	2.8	63	82	9	204	30	18	22	28	1.97
58576--58777	65	3.1	64	76	14	191	28	18	22	30	1.97
62069--62120	19	2.7	19	87	0	86	19	19	32	28	1.96
64817--64898	23	3.6	22	75	8	69	24	23	26	25	2.00
69054--69099	10	4.5	11	81	10	53	67	0	0	32	0.91
72139--72163	11	2.3	11	100	0	50	44	0	0	56	0.99
72575--72697	61	2.0	61	100	0	246	39	8	11	41	1.71
72576--72672	30	3.2	30	66	13	90	40	6	11	42	1.66
76986--77072	2	43.5	2	100	0	174	50	0	0	49	1.00
78829--78871	16	2.8	16	82	6	54	76	6	0	16	0.99
78847--78885	20	2.0	20	89	0	60	71	10	0	17	1.12
79744--79782	20	2.0	20	100	0	78	0	23	5	71	1.05
80258--80350	3	30.7	3	91	2	150	62	0	2	35	1.07
80665--81112	113	3.9	113	89	5	629	29	19	13	36	1.91
81515--81591	22	3.5	22	85	0	100	36	11	15	36	1.84
81963--82105	50	2.7	54	83	8	188	25	20	13	39	1.90
84214--84543	114	2.9	113	91	2	525	31	20	15	33	1.93
90006--90059	14	3.8	14	85	2	63	51	9	14	24	1.71
91646--91718	28	2.6	29	78	6	78	61	0	6	31	1.22
92404--92442	20	2.0	20	89	0	60	71	10	0	17	1.12
93316--93354	20	2.0	20	100	0	78	0	23	5	71	1.05
93827--93917	3	30.7	3	93	2	157	63	0	2	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94232--94294	2	31.5	2	100	0	126	49	0	0	50	1.00
97192--97240	19	2.5	19	83	3	62	42	22	14	20	1.88
97192--97296	55	1.9	56	82	9	135	41	21	14	21	1.89
99541--99586	21	2.2	21	92	0	74	17	15	30	36	1.91
99994--100092	21	4.7	21	76	9	103	23	35	20	21	1.96
99994--100112	42	2.8	42	82	5	141	21	36	21	20	1.95
101392--101531	66	2.2	62	87	9	196	30	0	17	51	1.50
101590--101679	20	4.8	20	68	15	75	38	22	20	18	1.93
102278--102316	18	2.2	18	90	0	60	48	10	5	35	1.59
105433--105486	24	2.2	24	90	0	81	40	20	16	22	1.91
106414--106441	2	14.0	2	100	0	56	50	0	0	50	1.00
119712--119757	19	2.4	19	100	0	92	47	10	19	21	1.80

Tables:   1

The End!