Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004277.1 Hibiscus syriacus cultivar Beakdansim tig00009375_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72078

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6131--6196
33
2.0
33
93
0
114
45
1
6
46
1.37
12381--12414
14
2.4
14
100
0
68
58
8
11
20
1.59
22191--22216
13
2.0
13
100
0
52
15
30
7
46
1.74
26161--26238
9
8.3
10
85
12
80
34
0
0
65
0.93
26173--26238
3
22.0
3
90
6
107
36
0
0
63
0.95
43041--43070
11
2.7
11
100
0
60
23
20
36
20
1.95
46353--46377
10
2.5
10
100
0
50
72
0
8
20
1.10
48146--48270
42
3.0
42
80
3
137
31
20
22
25
1.98
48270--48720
59
7.6
59
81
0
418
29
15
26
27
1.96
48286--48717
177
2.4
177
82
2
510
30
16
26
27
1.96
48773--48848
20
3.7
20
70
16
57
31
19
22
26
1.98
48748--48855
42
2.6
42
79
7
123
29
19
21
29
1.97
48772--48829
22
2.8
21
75
12
57
32
18
18
29
1.96
48909--49019
52
2.1
54
86
5
154
42
19
9
27
1.83
50978--51036
12
5.5
10
83
16
66
0
16
0
83
0.66
50973--51038
11
5.5
12
78
12
73
0
18
0
81
0.68
50973--51032
31
1.9
32
86
10
88
0
18
0
81
0.69
50973--51038
5
13.2
5
76
20
59
0
18
0
81
0.68
50973--51033
15
3.9
15
81
14
70
0
18
0
81
0.68
50973--51038
26
2.6
25
82
15
82
0
18
0
81
0.68
56842--56873
16
2.0
16
93
0
55
40
0
15
43
1.47
66500--66620
44
2.8
44
87
1
181
26
15
21
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66500--66624
22
5.7
22
74
8
112
26
16
22
35
1.94
71492--71540
25
2.0
25
84
8
64
26
16
8
48
1.73

Tables:   1

The End!