Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004278.1 Hibiscus syriacus cultivar Beakdansim tig00009376_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61652

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15374--15431
23
2.6
22
81
15
66
60
1
1
36
1.17
16322--16375
23
2.3
23
90
0
90
33
16
16
33
1.92
16524--16615
27
3.5
27
82
8
109
55
0
3
41
1.16
16543--16615
25
2.8
27
83
12
98
54
0
2
42
1.14
16569--16626
22
2.6
23
81
5
66
53
0
1
44
1.10
16546--16628
25
3.0
29
72
21
81
54
0
2
43
1.13
17391--17466
31
2.5
31
86
0
107
47
13
11
27
1.77
20245--20274
2
15.0
2
100
0
60
50
0
0
50
1.00
22501--22708
105
2.0
105
88
0
308
31
18
23
26
1.98
23091--23159
29
2.4
30
83
9
81
44
1
4
49
1.31
23147--23220
26
2.8
26
76
11
71
48
0
1
50
1.09
24445--24513
26
2.7
26
95
0
120
37
31
2
27
1.72
25403--25473
33
2.2
31
83
14
83
69
4
5
21
1.27
26759--28615
5
372.6
5
97
1
2371
55
23
4
16
1.58
34557--34712
67
2.4
64
83
10
185
44
8
3
42
1.54
34583--34712
67
2.0
68
86
7
187
44
6
4
43
1.51
34861--34889
2
14.5
2
100
0
58
51
0
0
48
1.00
36134--36168
3
11.7
3
87
0
52
2
31
0
65
1.07
36131--36171
9
4.6
9
87
0
55
7
31
0
60
1.24
41922--41965
14
3.1
14
80
0
61
38
15
25
20
1.92
44147--44190
18
2.4
18
85
7
54
40
18
20
20
1.91
47070--47257
60
3.1
59
79
7
209
34
21
3
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53269--53298
2
15.0
2
100
0
60
50
0
0
50
1.00
58707--58884
94
1.9
94
95
0
320
21
20
15
42
1.88

Tables:   1

The End!