genome.fa.s4279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004279.1 Hibiscus syriacus cultivar Beakdansim tig00009380_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101568

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--681	196	3.5	197	92	6	1176	35	16	16	31	1.91
2136--2205	3	23.0	3	75	2	59	34	5	34	25	1.80
2124--2204	27	3.0	27	87	1	108	34	7	34	23	1.83
2169--2205	19	1.9	19	94	0	65	35	2	32	29	1.72
6514--6577	23	2.8	23	87	0	92	35	6	20	37	1.78
6514--6586	23	3.2	23	82	7	85	34	5	20	39	1.76
6933--6995	22	2.8	23	85	4	83	34	6	20	38	1.78
6933--7004	23	3.2	22	80	11	74	33	5	20	40	1.76
6419--7235	420	1.9	420	95	3	1470	38	8	13	39	1.74
7846--7970	39	3.2	39	95	2	225	48	20	13	17	1.81
8364--8426	22	2.8	23	85	4	83	34	6	20	38	1.78
8364--8435	23	3.2	22	80	11	74	33	5	20	40	1.76
10294--10358	3	21.0	3	81	6	76	33	4	33	27	1.78
14707--14770	23	2.8	23	87	0	92	35	6	20	37	1.78
14707--14779	23	3.2	23	82	7	85	34	5	20	39	1.76
15134--15196	23	2.7	23	90	0	90	36	6	19	38	1.77
15134--15206	23	3.2	23	86	3	85	35	5	19	39	1.75
15476--15522	24	2.0	24	95	0	85	27	8	21	42	1.81
15769--15805	18	2.1	18	89	0	56	32	5	10	51	1.60
16062--16187	39	3.2	39	97	0	234	48	20	13	17	1.81
16589--16652	23	2.8	23	87	0	92	35	6	20	37	1.78
16589--16661	23	3.2	23	82	7	85	34	5	20	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17994--18048	21	2.6	21	77	8	58	61	7	0	30	1.23
25667--25710	18	2.6	18	89	7	65	38	6	22	31	1.81
26281--26363	34	2.3	35	91	6	132	40	38	10	9	1.73
26349--26802	216	2.2	200	84	11	573	38	25	10	25	1.88
32561--32603	21	2.0	21	86	0	59	48	2	11	37	1.52
33897--33946	21	2.4	21	80	12	59	32	24	20	24	1.98
38533--38604	28	2.7	27	77	20	71	66	0	1	31	1.00
55659--55700	21	2.0	21	95	0	75	23	38	7	30	1.82
58729--58794	30	2.2	30	83	5	80	12	30	22	34	1.91
78282--78353	24	3.0	24	78	8	83	51	16	11	20	1.75
78280--78373	48	2.0	48	85	4	127	50	14	12	22	1.77
87120--87756	188	3.4	183	80	8	586	31	16	20	32	1.95
87266--87756	188	2.6	188	85	4	644	31	16	19	31	1.94
89562--89599	2	19.5	2	94	5	69	50	0	0	50	1.00
90400--90432	3	11.0	3	100	0	66	66	0	0	33	0.92

Tables:   1

The End!