genome.fa.s428.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000428.1 Hibiscus syriacus cultivar Beakdansim tig00000787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74931

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2478--2527	15	3.5	15	81	8	59	40	8	20	32	1.81
2657--2710	24	2.2	25	90	3	83	25	25	20	27	1.99
7223--7254	2	16.0	2	93	0	55	46	0	0	53	1.00
8653--8720	3	23.0	3	82	14	88	67	0	0	32	0.91
8672--8734	9	6.9	9	76	20	51	73	1	0	25	0.93
8672--8728	12	4.5	12	77	12	60	73	0	0	26	0.83
9075--9504	118	3.7	117	80	11	469	26	20	15	38	1.92
9192--9528	107	3.0	108	79	12	360	27	20	15	36	1.93
9893--10003	22	5.0	22	97	0	213	36	14	18	31	1.90
11330--11513	73	2.6	72	87	5	257	35	20	15	28	1.93
15377--15410	13	2.4	15	90	9	54	58	8	17	14	1.61
15377--15410	7	4.9	7	86	13	52	58	8	17	14	1.61
16021--16088	35	1.9	36	87	3	102	25	10	20	44	1.83
16367--16404	15	2.5	15	86	0	58	15	21	13	50	1.78
17361--17389	13	2.2	13	100	0	58	34	13	6	44	1.71
17590--17623	2	17.0	2	100	0	68	50	0	0	50	1.00
19092--19151	3	20.0	3	86	6	86	66	0	0	33	0.92
19096--19179	14	6.1	14	78	17	54	72	1	0	26	0.92
19107--19188	16	5.1	16	81	10	78	74	2	0	23	0.94
19150--19195	16	2.9	15	84	15	58	82	4	2	10	0.89
21843--21880	15	2.5	15	91	0	58	39	7	23	28	1.83
22028--22080	26	2.1	26	85	3	72	33	20	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22077--22134	24	2.5	24	77	2	64	27	18	20	32	1.97
22676--22709	17	2.1	17	88	5	52	44	8	17	29	1.79
27009--27130	65	1.9	64	84	5	165	28	20	17	33	1.95
27013--27155	65	2.2	64	78	12	148	30	19	19	30	1.97
28064--28132	18	3.3	22	75	20	60	28	14	27	28	1.95
29462--29525	23	2.9	23	76	19	73	67	3	6	23	1.28
29666--29697	2	16.5	2	93	6	57	50	0	0	50	1.00
31027--31259	107	2.2	107	87	1	324	21	18	25	34	1.96
31544--31628	34	2.4	36	94	3	147	31	10	17	40	1.84
31668--32167	37	14.9	35	67	23	185	37	12	19	30	1.88
31795--31853	30	2.0	30	86	6	84	32	10	16	40	1.82
31846--31919	35	2.1	35	82	9	89	43	13	20	22	1.87
31741--32083	100	3.5	97	86	7	439	37	11	19	31	1.88
31872--32249	165	2.3	161	87	8	541	36	12	20	30	1.89
31970--32148	66	2.8	65	89	6	267	35	12	21	31	1.90
32099--32183	36	2.4	35	86	4	107	40	14	21	24	1.90
32035--32270	101	2.3	98	86	6	303	37	13	19	29	1.90
33469--33817	182	1.9	182	94	0	617	29	20	22	27	1.99
37786--37846	21	2.9	21	79	16	63	68	3	6	21	1.27
43232--43296	18	3.6	18	89	6	96	18	23	26	32	1.97
43775--43821	14	3.2	16	77	20	57	57	0	12	29	1.36
47427--48420	4	252.0	4	97	2	1890	24	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48665--49037	30	12.4	30	96	0	683	24	19	23	32	1.98
56294--56436	65	2.2	65	80	7	157	30	22	18	29	1.97
57822--59540	856	2.0	856	99	0	3420	31	21	11	35	1.89
64900--65075	87	2.0	87	94	0	307	26	22	25	25	2.00
66374--66398	6	4.2	6	100	0	50	36	16	32	16	1.90
70454--70493	21	2.0	21	85	5	55	32	2	65	0	1.06
71074--71125	21	2.5	21	81	3	61	38	19	25	17	1.93
71114--71228	20	5.7	20	78	6	97	31	25	19	24	1.98
71111--71248	41	3.4	41	75	6	136	34	23	18	23	1.96
71416--71459	22	2.0	22	95	0	79	20	45	15	18	1.85
71702--71745	20	2.2	20	87	0	61	11	18	20	50	1.77
73044--73088	18	2.5	18	85	0	63	26	42	15	15	1.87
73483--73511	12	2.3	13	94	5	51	0	3	17	79	0.87
73607--73702	19	5.6	19	67	25	70	47	21	17	12	1.81
73623--73680	14	3.9	14	75	16	62	50	24	15	10	1.75
73611--73697	32	2.7	32	90	3	129	50	21	16	11	1.76
73715--73771	14	3.8	14	78	17	69	8	15	26	49	1.74
73709--73787	32	2.4	33	93	2	133	10	17	25	46	1.79
73772--73827	20	2.8	19	86	7	76	16	25	23	35	1.94
74891--74918	9	3.1	9	100	0	56	35	0	0	64	0.94

Tables:   1

The End!