Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004280.1 Hibiscus syriacus cultivar Beakdansim tig00009384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77905

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5172--5258
34
2.6
34
79
0
111
22
9
22
44
1.81
5366--5407
20
2.1
20
86
0
57
50
2
21
26
1.61
19087--19146
2
30.0
2
100
0
120
50
0
0
50
1.00
19195--19244
3
16.7
3
85
0
64
30
4
2
64
1.23
19306--19351
19
2.5
18
77
19
58
15
10
0
73
1.08
19251--19351
48
2.1
47
83
8
125
17
9
0
72
1.11
19356--19400
23
2.0
23
82
8
56
20
2
2
75
1.01
19306--19400
39
2.5
35
78
18
95
17
7
2
72
1.17
23943--24377
157
2.8
156
86
3
563
37
22
13
26
1.92
24336--24497
60
2.7
60
84
7
231
37
23
16
22
1.93
24457--24807
124
2.8
124
86
1
488
35
25
15
22
1.94
24898--25190
85
3.4
85
83
2
331
34
18
19
26
1.95
24871--25268
85
4.7
85
80
3
325
34
19
18
27
1.95
27330--27365
18
2.0
18
89
10
56
36
2
0
61
1.11
27403--27513
11
10.9
9
67
21
51
17
7
1
73
1.14
27393--27462
21
3.2
22
80
8
81
20
4
0
75
0.96
27726--27766
14
2.9
14
81
0
55
9
12
2
75
1.13
29376--29567
66
2.9
66
72
10
185
31
2
38
28
1.71
29317--29567
132
1.9
133
85
2
344
33
2
35
28
1.72
31019--31073
13
4.3
13
79
4
58
60
1
1
36
1.18
32045--32303
102
2.6
102
87
3
357
38
10
18
32
1.85
32297--32458
67
2.4
66
80
3
189
40
9
18
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32421--32553
37
3.7
35
78
10
126
42
12
16
29
1.84
32318--32477
67
2.4
66
81
4
178
40
9
17
32
1.82
37416--37481
23
2.9
23
79
0
78
43
24
9
22
1.82
44104--44167
28
2.3
28
88
0
101
32
23
6
37
1.80
44289--44342
23
2.4
23
81
3
65
38
25
16
18
1.92
45899--45936
20
1.9
20
100
0
76
10
26
36
26
1.89
46565--46615
16
3.0
16
85
8
57
52
25
0
21
1.47
48537--48578
22
2.0
22
85
4
59
23
23
26
26
2.00
48565--48623
23
2.6
23
84
10
84
30
22
27
20
1.98
52430--52469
21
1.9
21
89
0
62
30
7
7
55
1.56
57831--58008
90
2.0
90
92
0
293
44
6
11
37
1.67
64254--64421
90
1.9
90
89
2
266
41
6
11
39
1.68
66224--66262
6
6.5
6
93
0
69
15
2
15
66
1.36
66271--66299
15
1.9
15
100
0
58
20
3
0
75
0.94

Tables:   1

The End!