genome.fa.s4283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004283.1 Hibiscus syriacus cultivar Beakdansim tig00009388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100031

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6885--6965	3	28.0	3	78	9	71	69	0	3	27	1.05
7361--7526	73	2.3	73	91	0	260	32	18	17	31	1.94
7511--7555	23	1.9	23	82	13	56	15	26	6	51	1.68
7434--7906	113	4.2	113	97	0	867	27	20	15	36	1.93
8342--8396	22	2.5	22	87	0	83	36	14	14	34	1.87
8763--8918	54	2.9	54	90	1	233	23	23	16	36	1.94
10991--11216	114	2.0	114	91	0	371	30	19	16	34	1.94
15329--15367	20	2.0	20	84	0	51	53	7	12	25	1.65
17699--17755	30	1.9	30	85	0	78	61	1	1	35	1.17
19072--19148	6	13.0	6	80	2	75	64	0	1	33	1.01
19111--19163	6	8.3	6	80	12	52	75	0	1	22	0.90
19102--19178	21	3.5	21	80	15	66	71	2	2	23	1.11
21156--21191	19	1.9	19	88	5	56	44	0	11	44	1.39
27957--27994	19	2.0	19	89	0	58	31	0	7	60	1.25
28224--28302	31	2.5	31	87	4	113	36	18	10	34	1.85
29303--29339	9	3.9	10	86	10	51	21	0	0	78	0.75
50894--50924	13	2.4	13	94	0	53	6	29	12	51	1.65
54492--54618	53	2.4	52	84	8	159	24	15	23	36	1.94
60263--60351	29	3.1	29	78	1	99	48	12	2	37	1.53
63148--63172	13	1.9	13	100	0	50	44	0	0	56	0.99
65410--65479	31	2.2	29	77	20	70	47	0	4	48	1.21
65534--65579	24	2.0	23	83	12	58	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65574--65654	27	3.0	27	74	16	78	49	3	1	45	1.27
65640--65700	22	2.8	22	75	12	63	57	1	0	40	1.08
65678--65770	29	3.3	28	71	16	77	47	1	2	49	1.20
65692--65771	26	3.0	24	73	19	70	45	1	2	51	1.22
65745--65799	21	2.6	23	83	11	64	50	0	0	49	1.00
65774--65806	11	2.8	12	86	9	50	54	0	0	45	0.99
66320--66349	15	2.0	15	93	0	51	36	20	13	30	1.90
68268--68312	19	2.4	19	100	0	90	31	8	15	44	1.77
68313--68363	24	2.1	24	100	0	102	29	7	21	41	1.81
68859--69070	43	4.9	43	80	4	194	27	20	24	28	1.99
69504--69638	21	6.4	21	81	6	105	5	39	19	36	1.74
69500--69646	63	2.3	63	77	9	140	4	39	18	37	1.72
69568--69638	21	3.4	21	94	0	106	5	40	18	35	1.74
78136--78463	42	7.8	42	91	0	512	26	23	16	33	1.96
78731--78940	41	5.1	39	68	16	122	31	20	15	32	1.94
78733--78940	82	2.5	82	81	7	233	31	20	14	32	1.93
79066--79091	12	2.2	12	100	0	52	38	34	15	11	1.83
79801--79916	60	1.9	60	85	3	162	33	20	5	40	1.75
79806--79943	60	2.3	60	81	3	154	36	21	4	37	1.73
80058--80202	57	2.5	58	82	6	150	42	2	21	33	1.67
85974--86007	13	2.7	13	90	4	52	50	14	0	35	1.44
86229--86270	20	2.1	20	86	0	57	19	26	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90590--90616	13	2.1	13	100	0	54	62	37	0	0	0.95

Tables:   1

The End!