genome.fa.s4284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004284.1 Hibiscus syriacus cultivar Beakdansim tig00009392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204375

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023--1052	6	5.2	6	92	8	53	66	0	0	33	0.92
2776--2899	61	2.0	61	92	0	203	41	14	12	32	1.83
5009--5069	29	2.2	27	79	5	68	57	18	6	18	1.61
5506--5560	25	2.2	25	96	3	103	69	18	5	7	1.32
11370--11401	11	2.9	11	100	0	64	65	15	9	9	1.46
17222--17273	26	2.0	26	85	3	70	32	17	21	28	1.96
20636--20662	2	13.5	2	100	0	54	48	0	0	51	1.00
30349--30386	17	2.2	17	100	0	76	26	21	34	18	1.96
30988--32147	580	2.0	580	99	0	2284	30	21	15	31	1.95
32803--32853	22	2.3	22	83	12	61	68	3	3	23	1.23
45170--45456	36	8.1	36	87	3	350	18	23	22	35	1.95
47197--47519	36	9.1	35	88	3	373	19	23	21	35	1.96
47197--47516	108	3.0	108	87	4	427	19	23	22	35	1.96
48877--48910	16	2.2	15	89	5	50	38	11	29	20	1.88
48233--49584	674	2.0	674	96	0	2506	34	16	24	24	1.95
51740--51788	18	2.7	18	87	6	64	22	18	44	14	1.85
53142--53181	2	20.0	2	100	0	80	50	0	0	50	1.00
58832--58892	23	2.7	23	80	12	72	24	4	0	70	1.07
58832--58899	24	3.0	23	76	10	68	23	4	0	72	1.03
58926--59014	18	4.8	17	72	20	63	13	7	1	77	1.04
58933--59026	7	12.4	7	71	27	52	13	7	1	77	1.03
58954--59012	25	2.3	26	88	5	84	15	6	1	76	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58926--59038	42	2.7	40	80	11	113	14	8	0	76	1.07
58926--59026	14	7.2	15	67	24	60	12	7	0	78	1.01
59145--59179	3	11.7	3	100	0	70	31	0	0	68	0.90
60891--60945	27	2.1	25	80	12	58	25	14	5	54	1.61
62812--62860	22	2.2	22	96	0	89	36	24	12	26	1.91
63268--63303	18	2.0	18	88	0	54	19	2	30	47	1.64
63752--64072	106	3.0	105	91	3	511	35	23	17	23	1.96
63856--64335	264	1.8	264	93	0	827	34	25	17	22	1.96
64089--64660	110	5.3	108	86	4	622	34	24	18	23	1.96
64120--64660	216	2.5	216	82	4	637	34	24	17	23	1.96
66502--66562	23	2.6	23	82	7	70	22	4	0	72	1.04
66502--66570	24	3.0	23	76	8	68	23	4	0	72	1.02
66598--66699	25	4.2	22	69	25	64	13	7	1	76	1.09
66641--66705	14	4.6	15	73	24	61	15	6	1	76	1.05
66641--66706	15	4.7	14	74	22	59	16	6	1	75	1.07
66648--66734	41	2.2	40	81	10	97	13	10	2	73	1.18
66641--66731	40	2.2	40	82	7	103	14	9	2	73	1.18
68563--68681	57	2.1	57	82	6	143	21	8	39	30	1.83
68634--68858	33	6.8	33	82	0	243	22	11	36	30	1.89
68832--68940	57	1.9	57	81	3	130	22	9	36	32	1.85
73602--73894	33	8.7	33	76	7	207	24	11	34	28	1.91
76386--76473	24	3.5	24	83	13	124	29	17	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76391--76472	27	3.2	27	79	10	109	29	15	14	40	1.87
76457--76529	17	3.9	17	73	22	65	34	13	12	39	1.82
76431--76529	41	2.4	42	88	6	141	33	14	13	39	1.84
83005--83064	31	1.9	31	82	3	75	33	18	10	38	1.84
84432--84476	23	2.0	22	87	12	65	33	0	2	64	1.06
84437--84484	18	2.8	17	87	9	71	33	0	2	64	1.05
91513--91573	20	3.2	20	80	15	76	72	8	4	14	1.26
91579--91627	11	4.4	11	82	5	53	71	0	2	26	0.97
119065--119405	62	5.5	61	78	13	183	39	23	20	17	1.92
119248--119305	28	2.1	28	100	0	116	41	27	13	17	1.87
119067--119405	20	16.4	20	76	16	214	38	23	20	17	1.93
119516--119614	6	16.5	6	100	0	198	33	50	16	0	1.45
120361--120387	6	4.5	6	100	0	54	0	14	51	33	1.43
120498--120565	20	3.4	20	78	8	84	16	22	25	36	1.94
120498--120576	40	2.0	40	97	0	149	16	24	22	36	1.94
120511--120576	20	3.3	20	79	8	89	18	25	21	34	1.96
120588--120641	20	2.7	20	91	0	81	12	20	16	50	1.78
132259--132296	20	1.9	20	88	0	58	21	26	10	42	1.85
141180--141253	23	3.2	23	84	0	103	36	20	6	36	1.79
141511--142058	272	2.0	273	95	1	992	43	8	5	42	1.59
142514--142624	23	4.8	23	92	0	177	37	18	8	35	1.81
153367--153839	235	2.0	237	98	1	916	29	25	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163385--163410	2	13.0	2	100	0	52	50	0	0	50	1.00
163913--164000	44	2.0	44	100	0	176	38	15	20	25	1.92
170362--170419	30	1.9	30	85	0	80	58	12	10	18	1.61
171540--171582	2	22.0	2	85	4	61	55	0	0	44	0.99
171871--173342	106	13.9	106	92	1	2344	23	17	25	33	1.96
177187--177244	30	1.9	30	85	0	80	58	12	10	18	1.61
178369--178405	2	19.0	2	88	5	58	54	0	0	45	1.00
179105--179147	17	2.4	19	81	14	56	44	2	0	53	1.13
181026--181093	21	3.2	21	91	4	111	23	1	2	72	1.07
183860--183920	22	2.8	22	84	0	68	31	16	24	27	1.96
184582--184622	21	2.0	21	95	0	73	26	19	26	26	1.99
186835--186877	2	21.5	2	100	0	86	48	0	0	51	1.00
187035--187086	2	26.0	2	100	0	104	50	0	0	50	1.00
187086--187125	2	20.0	2	100	0	80	50	0	50	0	1.00
189095--189130	2	18.5	2	94	5	65	50	0	0	50	1.00
193153--193215	31	2.0	31	100	0	126	36	19	9	34	1.84
193379--193416	15	2.5	16	83	12	53	34	0	2	63	1.09
193546--193628	43	2.0	43	88	7	125	50	8	10	30	1.67
196138--196197	29	2.0	30	96	3	113	48	10	13	28	1.74
200808--200832	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!