Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004285.1 Hibiscus syriacus cultivar Beakdansim tig00009396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56913

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1165--1273
55
2.0
55
90
3
175
50
12
22
13
1.76
1258--1307
6
7.8
6
83
16
57
82
2
16
0
0.77
1258--1307
11
4.5
11
78
12
57
82
2
16
0
0.77
1256--1301
7
6.7
7
80
14
60
80
2
17
0
0.81
1264--1307
14
3.2
14
78
15
56
81
2
15
0
0.78
2383--2844
106
4.5
106
84
6
567
33
25
19
21
1.97
2603--2787
95
1.9
95
87
0
271
34
23
20
21
1.96
4842--4893
14
3.7
14
84
5
61
23
5
0
71
1.07
7511--7606
3
31.7
3
97
2
183
66
1
32
0
0.99
8826--8873
24
2.1
23
85
11
64
27
4
6
62
1.38
20416--20471
5
11.6
5
74
14
55
51
0
3
44
1.18
20408--20469
14
4.4
14
80
11
63
50
0
4
45
1.23
20394--20470
23
3.5
22
79
10
77
51
1
3
42
1.28
20415--20477
14
4.4
14
82
11
74
50
0
3
46
1.17
20804--20937
48
2.8
48
95
0
241
32
17
20
29
1.95
20715--21037
161
2.0
161
93
0
556
32
15
23
28
1.95
20852--21164
113
2.8
113
89
0
484
31
16
22
29
1.96
26212--26244
16
2.1
16
100
0
66
51
6
6
36
1.51
28978--29068
3
31.7
3
80
8
91
58
1
1
39
1.13
28992--29076
14
6.0
13
84
10
80
56
0
1
42
1.07
28978--29076
20
5.2
19
77
17
91
56
1
1
41
1.13
28978--29068
17
5.3
17
78
4
76
58
1
1
39
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29726--29811
27
3.5
24
79
17
97
37
16
17
29
1.91
30832--30976
30
4.9
29
76
12
127
57
11
14
17
1.65
30838--30976
60
2.3
60
78
10
144
57
10
14
17
1.65
31541--31616
2
38.0
2
97
0
143
51
0
48
0
1.00
32445--32508
3
21.7
3
78
9
69
60
1
4
32
1.26
39753--39788
16
2.2
16
95
0
63
11
27
22
38
1.88
43234--43292
27
2.4
26
81
15
72
27
11
18
42
1.85
56100--56156
30
1.9
30
89
7
89
24
5
1
68
1.20
56294--56334
16
2.6
16
81
18
50
24
0
0
75
0.80

Tables:   1

The End!