genome.fa.s4286.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004286.1 Hibiscus syriacus cultivar Beakdansim tig00009398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87936

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3067--3181	58	2.0	58	92	0	194	38	6	24	31	1.80
4323--4497	88	2.0	89	89	1	271	40	10	4	44	1.60
4459--4528	22	3.3	21	76	20	65	50	1	2	45	1.25
10911--11011	42	2.4	41	80	3	121	29	22	22	24	1.99
10740--11430	216	3.2	215	90	2	1095	30	18	16	34	1.94
11426--11612	37	5.1	37	81	4	209	23	16	22	37	1.94
17766--17877	21	5.3	21	89	4	154	16	17	22	43	1.87
17766--17889	43	2.9	43	87	3	162	14	17	22	45	1.85
24642--24757	59	2.0	60	85	1	162	30	18	18	32	1.95
24629--24757	59	2.2	59	81	5	152	31	19	17	31	1.95
25432--25491	29	2.1	29	84	3	77	41	3	20	35	1.68
26297--26337	16	2.6	16	88	3	57	29	21	12	36	1.90
27193--27235	22	2.0	22	81	9	52	41	2	9	46	1.48
27821--27896	24	3.0	24	81	15	73	56	0	0	43	0.99
27878--27931	21	2.3	23	81	12	67	51	0	5	42	1.25
28022--28053	2	16.0	2	100	0	64	50	0	0	50	1.00
32512--32545	2	17.0	2	100	0	68	50	0	0	50	1.00
35283--35328	20	2.3	20	85	7	58	41	0	6	52	1.27
35291--35329	20	2.0	20	90	5	62	35	0	5	58	1.20
37276--37329	21	2.7	19	81	10	63	53	1	1	42	1.22
37769--37816	23	2.1	23	88	0	69	35	12	18	33	1.89
38543--38579	18	2.1	18	89	0	56	51	10	5	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38782--38846	23	2.8	23	90	0	94	38	18	7	35	1.80
39208--39270	23	2.7	23	90	0	90	38	19	6	36	1.77
38806--39992	408	2.9	412	96	3	2133	37	13	8	40	1.74
41742--41828	3	29.0	3	77	0	84	24	34	5	35	1.79
41742--41843	18	5.7	18	79	0	87	22	34	6	36	1.81
41750--41840	42	2.2	42	91	0	146	21	35	7	35	1.83
43300--44921	199	8.1	200	97	1	3026	32	14	15	37	1.88
43300--44921	399	4.1	399	96	0	3038	32	14	15	37	1.88
43300--44921	598	2.7	596	97	0	3041	32	14	15	37	1.88
45002--45046	19	2.4	19	92	0	72	57	8	2	31	1.41
46832--46897	33	2.0	33	87	0	96	24	45	1	28	1.62
49003--49055	24	2.2	24	83	6	63	26	7	13	52	1.66
49195--49236	19	2.3	18	88	8	59	21	16	9	52	1.72
49367--49412	20	2.3	20	89	10	76	17	17	10	54	1.70
58935--59007	33	2.2	35	82	9	98	49	0	2	47	1.15
59007--59051	21	2.0	23	87	8	67	46	0	2	51	1.13
59048--59076	2	14.5	2	100	0	58	51	0	0	48	1.00
66460--66504	17	2.6	17	92	3	72	11	22	42	24	1.86
73088--73134	20	2.3	20	85	7	60	51	14	4	29	1.62
73500--73555	28	2.0	28	82	6	69	32	0	3	64	1.11
74262--74338	2	38.5	2	97	0	145	49	0	0	50	1.00
81859--81900	14	3.0	14	96	0	75	50	30	0	19	1.48

Tables:   1

The End!