genome.fa.s4287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004287.1 Hibiscus syriacus cultivar Beakdansim tig00009403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112413

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17091--17129	18	2.2	18	86	9	53	74	2	0	23	0.94
19605--19956	148	2.3	148	79	8	352	50	6	13	29	1.67
20448--20482	4	8.8	4	100	0	70	51	22	0	25	1.48
25582--25635	26	2.0	27	89	3	83	46	25	1	25	1.63
32103--32142	21	1.9	21	89	0	62	25	40	25	10	1.86
36373--36476	7	15.7	7	77	8	87	2	36	0	60	1.12
36373--36454	3	25.3	3	80	11	83	1	36	0	62	1.03
37562--37602	3	13.3	3	94	5	73	68	0	31	0	0.90
37745--37832	3	29.3	3	100	0	176	34	0	65	0	0.93
49951--49989	17	2.3	17	86	0	60	58	0	0	41	0.98
49960--50016	30	1.9	29	85	3	78	57	0	0	42	0.98
50088--50138	26	2.0	26	84	7	68	60	0	3	35	1.15
50214--50269	24	2.3	24	79	11	62	62	1	0	35	1.06
50231--50302	18	4.0	18	72	16	60	62	2	0	34	1.10
50214--50319	11	9.6	11	68	23	55	63	1	0	34	1.06
51594--51687	3	32.0	3	83	8	122	60	0	0	39	0.97
51582--51687	15	7.3	15	81	11	96	58	0	0	41	0.98
51844--52253	76	5.4	76	97	0	766	34	21	22	21	1.97
52934--52986	22	2.4	22	93	0	97	41	13	11	33	1.80
55562--55872	114	2.7	114	93	0	534	33	19	14	31	1.92
57922--57953	16	2.1	15	94	5	55	0	21	0	78	0.76
60406--60444	7	5.6	7	85	8	53	58	7	17	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63009--63047	17	2.3	17	86	0	60	58	0	0	41	0.98
63146--63196	26	2.0	26	84	7	68	60	0	3	35	1.15
63272--63327	24	2.3	24	79	11	62	62	3	0	33	1.12
63289--63360	18	4.0	18	72	16	60	62	2	0	34	1.10
64651--64725	3	25.0	3	81	8	82	58	0	0	41	0.98
64639--64725	22	3.8	24	85	11	112	56	0	0	43	0.99
68481--68892	153	2.7	153	88	2	581	18	27	11	42	1.84
78859--79016	36	4.5	36	80	13	177	38	21	13	26	1.90
78926--78976	15	3.2	15	70	24	50	35	25	15	23	1.94
78859--79012	69	2.2	71	87	8	217	38	22	13	25	1.90
78861--79043	36	5.2	35	81	9	176	39	22	12	24	1.89
88242--88278	6	6.2	6	100	0	74	0	16	48	35	1.46
88516--88570	22	2.5	22	75	0	56	29	9	23	38	1.85
93842--93885	21	2.1	21	86	0	61	29	27	27	15	1.96
94893--95000	31	3.5	31	79	3	103	24	18	22	35	1.96
94946--95041	30	3.2	30	83	2	104	17	19	28	34	1.95
98255--98286	5	6.2	5	96	3	55	0	18	56	25	1.42
99291--99334	21	2.1	21	83	8	54	29	25	27	18	1.98
100359--100466	31	3.5	31	79	3	103	24	18	22	35	1.96
100412--100507	30	3.2	30	83	2	95	16	19	28	35	1.94
102230--102271	5	8.6	5	84	5	50	4	40	35	19	1.72
102272--102322	6	8.2	6	83	16	68	1	15	50	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102274--102312	20	1.9	21	94	5	71	2	15	53	28	1.55
103631--103678	2	25.0	2	87	8	73	50	0	2	47	1.12
104233--104286	2	28.0	2	88	7	85	50	1	0	48	1.11
104233--104286	27	2.0	27	96	0	99	50	1	0	48	1.11
104369--104393	13	1.9	13	100	0	50	36	16	0	48	1.46
105790--105854	32	2.0	32	96	0	121	44	7	9	38	1.65
105945--105972	13	2.2	13	100	0	56	64	7	7	21	1.43
106770--106810	19	2.3	18	84	12	50	24	19	9	46	1.80
107576--107668	21	4.6	20	79	4	105	39	18	23	18	1.92
107573--107668	41	2.3	41	96	0	174	40	17	22	18	1.91
107595--107726	41	3.2	41	80	6	117	38	20	20	20	1.94
107657--107751	20	4.7	20	80	2	82	35	23	17	23	1.95
107937--107980	22	2.0	22	95	0	79	20	45	15	18	1.85
108240--108277	20	1.9	20	88	0	58	13	15	21	50	1.78
110090--110156	20	3.4	20	81	2	73	38	23	22	14	1.92
110145--110202	14	3.9	14	77	16	62	50	25	15	8	1.73
110129--110219	32	2.8	33	93	3	157	48	23	17	10	1.79
110129--110224	19	5.6	18	67	25	66	46	22	18	11	1.81
110243--110309	18	4.0	16	76	20	66	11	14	23	49	1.77
110231--110340	32	3.4	32	88	2	159	11	16	23	48	1.79
110237--110324	14	5.8	14	73	20	70	11	14	25	48	1.77
110325--110380	20	2.8	19	86	7	76	16	25	23	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112358--112405	18	2.6	19	93	6	89	47	16	20	14	1.82

Tables:   1

The End!