genome.fa.s4288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004288.1 Hibiscus syriacus cultivar Beakdansim tig00009404_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195039

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700--898	33	5.8	33	64	21	81	49	1	3	45	1.26
768--825	23	2.5	24	78	13	59	51	1	1	44	1.21
1083--1160	17	4.8	16	71	17	63	57	1	2	38	1.20
4005--4039	18	1.9	18	88	0	52	28	17	0	54	1.43
5341--5375	18	1.9	18	100	0	70	14	22	45	17	1.84
9155--9189	18	1.9	18	88	0	52	28	17	0	54	1.43
10492--10531	18	2.2	18	100	0	80	10	22	50	17	1.76
13620--13654	18	1.9	18	100	0	70	17	45	22	14	1.84
14957--14991	18	1.9	18	88	0	52	54	0	17	28	1.43
19971--20005	18	1.9	18	88	0	52	54	0	17	28	1.43
21170--21233	31	2.0	32	90	6	103	18	23	42	15	1.89
21196--21232	13	2.8	13	95	0	65	13	24	45	16	1.83
21185--21237	18	3.2	18	70	25	62	13	22	47	16	1.82
26346--26370	13	1.9	13	100	0	50	20	24	40	16	1.91
26343--26419	31	2.5	32	87	6	122	18	22	44	15	1.87
26337--26427	18	5.2	18	73	16	84	17	20	45	16	1.86
31814--31870	3	19.0	3	96	0	105	66	1	0	31	1.02
38885--38924	20	2.0	21	85	14	57	42	5	7	45	1.54
39141--39302	65	2.5	65	84	1	200	30	25	16	27	1.96
45092--45147	22	2.7	21	83	10	62	30	23	17	28	1.97
46679--46722	21	2.1	21	86	0	61	9	36	15	38	1.80
47459--47498	20	2.0	21	85	14	57	42	5	7	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47668--47874	65	3.2	63	82	7	220	31	24	16	27	1.96
49007--49063	21	2.6	21	80	5	69	19	22	26	31	1.98
52179--52239	30	2.0	30	90	6	97	40	4	11	42	1.62
57105--57167	21	2.9	21	85	4	81	20	36	25	17	1.94
57107--57188	21	3.8	21	75	15	69	21	37	24	15	1.93
59596--59659	30	2.1	30	88	5	94	43	6	10	39	1.65
70946--71006	27	2.3	27	94	0	104	22	22	24	29	1.99
75389--75449	27	2.3	27	94	0	104	21	21	24	32	1.98
80605--80704	9	10.4	9	70	12	56	20	27	24	29	1.99
80605--80679	29	2.5	30	89	8	118	20	26	24	29	1.99
80702--80743	22	1.9	22	100	0	84	19	50	21	9	1.75
87903--87959	10	5.9	9	82	13	60	17	26	24	31	1.97
87924--87983	9	6.3	10	80	16	58	15	31	28	25	1.95
87903--87977	29	2.5	30	87	8	109	17	28	26	28	1.98
87980--88032	5	9.8	5	76	15	52	18	50	20	9	1.74
87979--88027	17	2.9	17	96	0	89	18	48	20	12	1.79
87997--88038	22	1.9	22	95	0	75	19	47	21	11	1.81
88029--88059	7	4.4	7	91	0	53	16	25	29	29	1.96
88640--88664	12	2.1	12	100	0	50	28	8	16	48	1.74
90810--90849	18	2.2	18	95	0	71	60	5	0	35	1.19
90931--91004	34	2.2	34	82	4	87	48	4	0	47	1.20
95699--95764	14	4.7	14	86	0	96	22	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95769--95793	13	1.9	13	100	0	50	16	28	24	32	1.96
96260--96337	38	2.1	38	97	0	147	37	23	3	35	1.73
107602--107649	15	3.3	15	75	18	57	52	2	39	6	1.39
119639--119739	48	2.1	46	82	10	123	48	5	0	44	1.33
119770--119841	31	2.3	31	85	0	90	40	4	2	52	1.35
120057--120106	3	16.7	3	100	0	100	32	0	0	68	0.90
122102--122173	34	2.1	34	92	0	117	30	2	5	61	1.33
122692--122746	21	2.6	21	88	0	83	23	27	27	21	1.99
122751--122792	21	2.0	21	90	0	66	21	11	40	26	1.88
123079--123127	3	16.7	3	87	4	73	36	0	2	61	1.08
124466--124498	15	2.2	16	89	10	52	27	0	3	69	1.03
136722--136788	16	4.1	16	90	5	100	79	0	10	10	0.95
136711--136806	8	12.5	8	69	22	55	77	1	12	9	1.05
136722--136812	16	5.2	18	84	15	88	76	0	13	9	1.01
138030--138284	105	2.4	105	83	2	323	39	16	18	25	1.91
138457--138496	3	13.7	3	84	5	55	37	0	2	60	1.11
139821--139853	15	2.2	16	89	10	52	27	0	3	69	1.03
145029--145080	12	4.3	12	95	0	86	23	17	19	40	1.91
150754--150824	35	2.0	36	88	2	108	52	14	2	30	1.56
151396--151438	21	2.0	21	86	0	59	18	0	32	48	1.48
151546--151608	11	5.9	11	69	14	51	41	1	1	55	1.19
151709--151743	17	2.1	16	94	5	61	25	25	31	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158412--158475	30	2.3	27	82	15	69	23	7	3	65	1.33
162003--162178	45	3.9	45	93	0	282	39	7	21	30	1.82
162047--162120	25	3.2	25	62	31	63	39	9	22	28	1.85
164096--164381	92	3.1	92	85	3	346	27	20	12	38	1.89
164111--164426	92	3.5	86	80	11	264	28	19	11	40	1.86
165779--165847	33	2.1	33	94	0	120	40	4	18	36	1.71
173339--173392	26	2.1	26	92	0	90	22	12	27	37	1.91
179569--179611	22	2.0	22	85	0	59	39	6	11	41	1.68
179823--179876	26	2.1	26	92	0	90	20	12	27	38	1.89
181838--181896	31	1.9	30	86	10	84	10	13	3	72	1.22
190696--190738	21	2.0	22	86	4	61	20	25	30	23	1.99
191166--191361	45	4.4	44	91	4	306	30	20	8	40	1.81
194380--194445	2	34.0	2	93	6	118	48	0	0	51	1.00
194477--194545	17	4.2	17	70	17	56	2	17	2	76	1.03
194460--194516	22	2.5	24	75	18	66	3	22	0	73	0.98
194493--194556	33	2.0	32	84	9	85	4	15	3	76	1.08

Tables:   1

The End!