Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004289.1 Hibiscus syriacus cultivar Beakdansim tig00009405_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74730

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2100--2378
4
70.0
4
95
0
470
25
3
25
46
1.67
2376--2410
2
17.5
2
93
0
61
2
0
45
51
1.16
9538--9612
18
4.6
17
68
21
54
38
2
1
57
1.21
10887--11128
114
2.1
114
84
3
317
33
15
12
38
1.86
11465--12374
6
154.7
6
93
6
1598
33
0
0
66
0.92
13535--13560
11
2.4
11
100
0
52
92
7
0
0
0.39
30691--30718
14
2.0
14
100
0
56
50
0
0
50
1.00
32747--32784
20
1.9
20
88
0
58
21
26
10
42
1.85
35459--35512
23
2.3
24
75
15
60
55
7
0
37
1.28
46550--46604
19
2.8
19
78
10
67
47
0
7
45
1.30
47169--47213
23
1.9
24
82
13
58
51
2
8
37
1.46
47169--47213
24
1.9
23
82
13
56
51
2
8
37
1.46
48465--48510
14
3.6
14
72
22
55
13
28
36
21
1.91
48464--48549
24
3.6
24
87
3
120
12
31
33
22
1.91
48792--48820
2
14.5
2
100
0
58
51
0
0
48
1.00
49322--49422
42
2.5
42
83
3
116
27
7
22
41
1.82
52742--52777
2
18.0
2
100
0
72
50
0
0
50
1.00
58827--58963
3
45.7
3
69
5
62
29
56
3
9
1.48
58840--58931
36
2.6
36
80
0
94
30
57
4
7
1.46
58827--58963
24
5.6
24
72
10
89
29
56
3
9
1.48
58942--58989
21
2.5
20
80
10
55
35
56
0
8
1.30
71422--71457
18
2.0
18
100
0
72
38
16
5
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71483--71513
4
7.8
4
100
0
62
0
25
51
22
1.48
73414--73455
6
7.0
6
100
0
84
0
66
0
33
0.92

Tables:   1

The End!