Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004290.1 Hibiscus syriacus cultivar Beakdansim tig00009412_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130140

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
497--572
38
2.0
39
84
2
100
40
21
9
28
1.84
1126--1150
2
12.5
2
100
0
50
52
0
0
48
1.00
8264--8322
20
3.0
20
78
9
77
27
30
22
20
1.98
9257--9315
26
2.3
26
90
0
100
37
20
5
37
1.75
10091--10142
22
2.4
21
75
6
59
55
3
5
34
1.42
11835--11957
45
2.8
45
83
3
160
30
19
8
42
1.80
14233--14277
23
2.0
23
90
0
72
33
8
8
48
1.65
19658--19685
13
2.2
13
100
0
56
35
35
0
28
1.58
25198--25312
61
1.9
59
82
7
142
33
20
2
44
1.65
25791--25958
60
2.8
58
75
8
153
42
5
17
34
1.73
30334--30385
19
2.8
19
76
2
52
26
1
0
71
0.97
31264--31290
4
6.8
4
100
0
54
51
0
0
48
1.00
31807--31878
37
2.0
36
91
2
117
20
20
20
37
1.95
31813--31890
37
2.1
37
85
4
104
21
21
19
37
1.95
32793--32843
23
2.3
23
86
3
68
60
1
3
33
1.26
32769--32855
19
4.4
19
69
18
61
57
1
3
37
1.23
32856--32925
23
3.0
23
72
16
63
50
1
1
47
1.19
34814--34874
31
2.0
30
84
6
79
24
6
11
57
1.57
37777--37805
3
9.7
3
100
0
58
68
0
0
31
0.89
41934--42047
59
1.9
60
87
5
169
32
18
6
42
1.75
41931--42082
59
2.6
58
81
9
164
33
19
5
41
1.74
42269--42397
29
4.4
29
79
7
134
44
3
20
31
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42310--42423
60
1.9
60
88
0
174
44
4
16
34
1.68
43440--43522
40
2.1
38
82
4
94
43
13
12
31
1.80
47493--47761
132
2.0
133
97
1
504
33
11
21
33
1.90
49657--49779
31
4.0
31
92
2
185
20
18
22
38
1.94
49958--50054
31
3.1
31
81
0
122
28
16
19
35
1.94
54348--54421
39
1.9
39
86
8
107
25
12
9
52
1.68
55529--55553
12
2.1
12
100
0
50
52
8
0
40
1.31
63748--63827
31
2.6
31
76
9
85
45
6
13
35
1.69
65130--65166
12
3.0
12
96
4
65
72
2
0
24
0.97
65405--65474
30
2.3
30
82
2
77
22
10
14
52
1.71
67475--67603
63
2.0
63
86
0
177
22
25
28
23
1.99
67527--67713
87
2.1
87
83
3
225
22
26
29
21
1.99
76252--76494
87
2.8
85
80
7
265
24
24
28
22
1.99
84275--84340
3
21.3
3
85
3
78
59
0
1
39
1.07
84581--85430
113
7.5
113
93
1
1299
27
18
14
39
1.90
85370--85469
40
2.5
40
96
0
182
18
22
10
50
1.76
85392--85457
20
3.3
20
65
23
57
15
24
10
50
1.75
86192--86469
92
3.0
92
92
1
443
34
21
14
29
1.93
86203--86499
92
3.2
89
84
6
353
32
20
16
29
1.95
87828--87883
9
5.9
9
85
10
67
0
17
0
82
0.68
87824--87887
22
3.0
20
78
17
67
0
21
0
78
0.76
87828--87878
19
2.7
19
82
8
68
0
17
0
82
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95197--95228
15
2.1
15
94
0
55
46
3
18
31
1.65
100187--100225
19
2.1
19
85
9
53
0
33
12
53
1.39
100621--100646
12
2.2
12
100
0
52
15
0
0
84
0.62
100647--100704
3
19.0
3
84
7
64
58
0
1
39
1.08
100649--100704
15
3.7
14
88
9
76
58
0
1
39
1.08
103154--103372
112
1.9
112
88
4
325
27
12
19
41
1.87
114440--114473
2
17.0
2
100
0
68
50
0
0
50
1.00
114986--115015
15
2.0
15
93
0
51
56
3
0
40
1.16
122220--122265
21
2.2
21
84
0
56
39
23
10
26
1.88
127066--127109
22
2.1
21
83
8
54
59
0
6
34
1.24
128562--128614
21
2.5
21
84
0
70
33
16
9
39
1.81

Tables:   1

The End!