Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004293.1 Hibiscus syriacus cultivar Beakdansim tig00009419_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101278

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2943--3055
41
2.8
41
83
2
129
32
17
17
31
1.94
3023--3116
20
4.6
20
78
13
93
31
13
20
34
1.92
3479--3518
15
2.7
15
84
0
53
37
25
5
32
1.77
6827--6895
33
2.1
33
86
5
95
33
1
34
30
1.67
6866--6978
36
3.2
36
89
1
156
29
3
34
32
1.75
11254--11382
36
3.7
35
83
10
149
31
3
34
31
1.73
11270--11382
36
3.2
36
89
1
156
29
3
34
32
1.75
16204--16239
17
2.1
17
89
0
54
38
0
27
33
1.57
21882--21962
26
3.1
26
85
0
108
22
12
27
38
1.90
28903--28933
14
2.1
15
94
5
55
16
19
12
51
1.76
31055--31097
12
3.4
12
80
6
50
2
13
4
79
1.00
34350--34502
77
2.0
79
83
5
195
42
7
5
43
1.57
36581--36634
17
3.2
16
75
15
56
35
1
1
61
1.18
36556--36669
22
5.3
20
71
18
70
38
2
0
57
1.18
37047--37096
21
2.5
20
77
6
55
16
6
8
70
1.32
42832--42905
35
2.1
36
94
2
132
25
37
4
32
1.75
43256--43295
18
2.1
18
86
9
53
80
5
12
2
0.98
43323--43371
15
3.3
15
71
23
50
77
2
16
4
1.01
43324--43388
30
2.1
30
86
13
89
70
3
18
7
1.24
47310--47372
13
5.2
12
76
16
60
23
42
1
31
1.64
47312--47391
35
2.3
35
95
0
142
25
41
3
30
1.73
64071--64174
36
2.9
36
86
1
147
28
3
35
31
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85935--85973
19
2.1
19
85
0
51
74
0
17
7
1.05
97778--97857
35
2.2
37
88
4
119
28
3
36
31
1.75

Tables:   1

The End!