Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004294.1 Hibiscus syriacus cultivar Beakdansim tig00009425_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99282
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:485 original size:25 final size:25
Alignment explanation
Indices: 457--521 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
447 TTATCATTAA
457 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
482 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
507 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
522 TCTTTTGATT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:1359 original size:18 final size:18
Alignment explanation
Indices: 1338--1374 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1328 GTAATTGGAG
1338 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
1356 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
1374 T
1 T
1375 CTATTTCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:1698 original size:36 final size:38
Alignment explanation
Indices: 1629--1712 Score: 127
Period size: 36 Copynumber: 2.2 Consensus size: 38
1619 TCCGATGCTC
*
1629 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAA-CTCATATGATGCCAAGCAAAAGGAA
*
1668 ATCAAAATTCAAA-TCATATGATG-CAAGCAAAAGGAA
1 ATCAAAATCCAAACTCATATGATGCCAAGCAAAAGGAA
1704 ATCAAAATC
1 ATCAAAATC
1713 TACAACTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 21 0.50
37 9 0.21
39 12 0.29
ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18
Consensus pattern (38 bp):
ATCAAAATCCAAACTCATATGATGCCAAGCAAAAGGAA
Found at i:2158 original size:23 final size:23
Alignment explanation
Indices: 2127--2199 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
2117 ATAGGTAAAA
* *
2127 ATATGATGTAATATGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
2150 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
2173 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
2196 ATAT
1 ATAT
2200 TGTAAAGTGC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2602 original size:21 final size:23
Alignment explanation
Indices: 2552--2622 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
2542 ATAGGTAAAA
* *
2552 ATATGATGTAATATGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
2575 ATATAATGTAATAGGTATCG-TT
1 ATATAATGTAATAGGTAGCGCTT
* *
2597 -TATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
2619 ATAT
1 ATAT
2623 TGTAAAGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 17 0.41
22 4 0.10
23 20 0.49
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:2626 original size:21 final size:21
Alignment explanation
Indices: 2576--2627 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
2566 GTAGCGCTTA
*
2576 TATAATGTAATAGGTATCGTT
1 TATAATGTAATAGGTATCGGT
2597 TATAATGTAATAGGTAGT-GGT
1 TATAATGTAATAGGTA-TCGGT
*
2618 TATATTGTAA
1 TATAATGTAA
2628 AGTGTCTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (21 bp):
TATAATGTAATAGGTATCGGT
Found at i:3005 original size:21 final size:21
Alignment explanation
Indices: 2980--3050 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
2970 TAAAAATATG
*
2980 ATGTAATATGTAGCGCTTATA
1 ATGTAATAGGTAGCGCTTATA
* *
3001 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCG-CT-TATA
* *
3024 ATGTAATAGGTAGTGGTTATA
1 ATGTAATAGGTAGCGCTTATA
*
3045 TTGTAA
1 ATGTAA
3051 AGTGTCTATC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 22 0.54
22 2 0.05
23 17 0.41
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (21 bp):
ATGTAATAGGTAGCGCTTATA
Found at i:3043 original size:23 final size:23
Alignment explanation
Indices: 2997--3045 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
2987 ATGTAGCGCT
*
2997 TATAATGTAATAGGTATCGTTTA
1 TATAATGTAATAGGTATCGGTTA
3020 TATAATGTAATAGGTAGT-GGTTA
1 TATAATGTAATAGGTA-TCGGTTA
3043 TAT
1 TAT
3046 TGTAAAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (23 bp):
TATAATGTAATAGGTATCGGTTA
Found at i:3360 original size:420 final size:430
Alignment explanation
Indices: 1924--3388 Score: 2747
Period size: 423 Copynumber: 3.5 Consensus size: 430
1914 GTTAATGTTG
1924 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
1989 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
2054 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
2119 AGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
*
2184 TAGGTAGTGGTTATATTGTAAAGTGCCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
2249 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
2314 GTCTAATGATTTATTTTTTACGTTACGATATATA-TATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
2353 TTAAATTAAAAATTCTAAATAATATTTTAT-AAATATCAAATAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
2417 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT--AAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
2480 AATTACATAACTTTAAAAGAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
2544 AGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGGTATCG-TT-TATAATGTAA
196 AGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
2607 TAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
2672 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
2737 GTCTAATGATTTA-TTTTTACGTTACGATATATATTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
2776 TTAAATTAAAAATTCTAAATAATA-TTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
2840 TGAAATTATTAAATT-A-ATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
*
2903 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTAT-AAAAGAATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
2967 AGGTAAAAATATGATGTAATATGTAGCGC-T-TATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
3030 TAGGTAGTGGTTATATTGTAAAGTGTCTATCC-TTTTATAAAAGTGTCCATAC-TTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
3093 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT-AGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
3157 GTCTAATGATTTATTTTTTACGTTACGATATATATTA-TA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
3196 TT-AATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
*
3260 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTG-AA-GTA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
3323 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
3388 A
196 A
3389 TAATGTAATA
Statistics
Matches: 1019, Mismatches: 5, Indels: 32
0.96 0.00 0.03
Matches are distributed among these distances:
419 21 0.02
420 136 0.13
421 150 0.15
422 89 0.09
423 373 0.37
424 8 0.01
425 84 0.08
426 47 0.05
428 81 0.08
429 30 0.03
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (430 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
AGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
TAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:19511 original size:28 final size:28
Alignment explanation
Indices: 19455--19511 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
19445 AGTTTATTTT
*
19455 ACTGTTTATATATTAATTTTTTATAAAA
1 ACTGTTTATATATTAATTTTTAATAAAA
*
19483 ACTGTATT-TATATT-ATTTTATAATTAAA
1 ACTGT-TTATATATTAATTTT-TAATAAAA
19511 A
1 A
19512 TTAAATTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.20
28 18 0.72
29 2 0.08
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (28 bp):
ACTGTTTATATATTAATTTTTAATAAAA
Found at i:20436 original size:18 final size:17
Alignment explanation
Indices: 20413--20453 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
20403 GATTACATGT
20413 GGGAATGTAAGATTATCA
1 GGGAATGTAAGATTAT-A
*
20431 GGGAA--TAAGATTATT
1 GGGAATGTAAGATTATA
20446 GGGAATGT
1 GGGAATGT
20454 TGTATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
15 5 0.25
16 9 0.45
17 1 0.05
18 5 0.25
ACGTcount: A:0.37, C:0.02, G:0.32, T:0.29
Consensus pattern (17 bp):
GGGAATGTAAGATTATA
Found at i:20645 original size:35 final size:36
Alignment explanation
Indices: 20587--20659 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 36
20577 GTTAGAAAAT
* *
20587 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTGAAAAT-ATAAA
*
20624 ATTTATATA-TTT-TTTACAAAATTGAAAATATAAA
1 ATTTATATATTTTCTTTAAAAAATTGAAAATATAAA
20658 AT
1 AT
20660 GGTTTAATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 7 0.21
35 14 0.42
36 3 0.09
37 9 0.27
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAAATTGAAAATATAAA
Found at i:25894 original size:37 final size:38
Alignment explanation
Indices: 25772--25916 Score: 211
Period size: 38 Copynumber: 3.8 Consensus size: 38
25762 TATAATACTG
* * *
25772 TATTTTAATCCAATATAAATTCATAAATAATACATTCT
1 TATTTTAATCAAATATAAATTCATAAATAATATATTCA
* *
25810 TATTTTAATCGAATATAAATTCATAAATAATATTTTCA
1 TATTTTAATCAAATATAAATTCATAAATAATATATTCA
* *
25848 TACTTTAATCAAATATAAATTCGTAAATAA-ATATTCA
1 TATTTTAATCAAATATAAATTCATAAATAATATATTCA
*
25885 TATTTTAATCAAATATAAATTCTTAAATAATA
1 TATTTTAATCAAATATAAATTCATAAATAATA
25917 GAACATTATC
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
37 34 0.35
38 62 0.65
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (38 bp):
TATTTTAATCAAATATAAATTCATAAATAATATATTCA
Found at i:25912 original size:75 final size:76
Alignment explanation
Indices: 25775--25916 Score: 223
Period size: 75 Copynumber: 1.9 Consensus size: 76
25765 AATACTGTAT
* * *
25775 TTTAATCCAATATAAATTCATAAATAATACATTCTTATTTTAATCGAATATAAATTCATAAATAA
1 TTTAATCAAATATAAATTCATAAATAATACATTCATATTTTAATCAAATATAAATTCATAAATAA
25840 TATTTTCATAC
66 TATTTTCATAC
* * *
25851 TTTAATCAAATATAAATTCGTAAATAA-ATATTCATATTTTAATCAAATATAAATTCTTAAATAA
1 TTTAATCAAATATAAATTCATAAATAATACATTCATATTTTAATCAAATATAAATTCATAAATAA
25915 TA
66 TA
25917 GAACATTATC
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 35 0.58
76 25 0.42
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (76 bp):
TTTAATCAAATATAAATTCATAAATAATACATTCATATTTTAATCAAATATAAATTCATAAATAA
TATTTTCATAC
Found at i:26958 original size:23 final size:23
Alignment explanation
Indices: 26914--26959 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26904 AACATATTAA
* **
26914 GTAGCGCTTATATAATGTAATAG
1 GTAGCACTTATATAATAAAATAG
26937 GTAGCACTTATATAATAAAATAG
1 GTAGCACTTATATAATAAAATAG
26960 ACATTTAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (23 bp):
GTAGCACTTATATAATAAAATAG
Found at i:30310 original size:200 final size:200
Alignment explanation
Indices: 29923--31600 Score: 2479
Period size: 200 Copynumber: 8.5 Consensus size: 200
29913 CATTTGGTTT
* * * *
29923 TAATAATGTTTTTCGATGTTTTTGGGATCGAAAATTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* * *
29988 ACTTGGTTTTTAAAATACACTCTGGACAAAAATGTATCGACACTTGTTGGATTTGTATCGATACT
66 ACTTGGTTTTTAAAATACAATATGGAC-AAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* ** *
30053 TCATGTATACTTGTTTTCTCATAAACTAGTATATTTAGACCGGTTACATTGTTAATTTACCTATT
130 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATT
30118 ACATTA
195 ACATTA
* *
30124 TAATTATGTTTTTTGATGTTTTCGGGATCGACACTTGTTATAAATGTATCAAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* *
30189 ACTTGGTTTTTAAAATACAAAATGGACAAAATGTATTGACACTTGTTGGATTTGTGTCGATACTT
66 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
*
30254 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACACTGTTAATTTACCTATTA
131 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATTA
30319 CATTA
196 CATTA
* *
30324 TAATTATGTTTTTTGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
**
30389 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTATATTTGTGTCGATACTT
66 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
*
30454 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATTA
131 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATTA
30519 CATTA
196 CATTA
* * * *
30524 TAATTATATTTTTTGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTATGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* *
30589 ACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTAGATTTGTGTCGATACT
66 ACTTGGTTTTTAAAATACAATATGGAC-AAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* * *
30654 TCATGTATACCTGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTACTTATT
130 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATT
30719 ACATTA
195 ACATTA
30725 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
30790 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
66 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
* *
30855 TATGTATACATGTTTTCTAATAAACCGG--TA--T--A--T-TT--A--G-------ACCTATTA
131 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATTA
30900 CATTA
196 CATTA
* * *
30905 TAATTATGTTTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* **
30970 ACTTGGTTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTTTATTTGTGTCGATACTT
66 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
** * * * * * *
31035 TTTGTACACCTGTTTTCTCAAAAACCGGTATGTTTAGACCGGTTACATTGCTAATTTACCTATTA
131 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATTA
31100 CATTA
196 CATTA
* *
31105 TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTCC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
31170 ACTTGGTTTTTAAAATACAATATGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
66 ACTTGGTTTTTAAAATACAATATGGAC-AAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* *
31235 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACTTGTTACATTGTTAATTTAGCTATT
130 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATT
31300 ACATTA
195 ACATTA
* *
31306 TAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* * *
31371 ACTTGGTTTTTTAAAA-ACACTCTGGACAAAAAGTATCGACACTTGTTGGATTTGTGTCGATACT
66 ACTTGG-TTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* * * * * *
31435 TTATGTATACCTGTTTTCTCAAAAACCGGTATATTTTGACCGGTTACATTGTTATTTTACCTATT
130 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATT
31500 ACATTA
195 ACATTA
** * * * *
31506 T-ATCTATGTGTTTT-GATGTTTTTAGTATTGACACTTGTTTTAAATGTATCGACACTCTT-TTC
1 TAAT-TATGT-TTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACT-TTGTT-
** *
31568 GTGCACTTGG-TTTGGAAATACATTATGGACAAA
62 GTGCACTTGGTTTTTAAAATACAATATGGACAAA
31601 TTTATTATGC
Statistics
Matches: 1348, Mismatches: 101, Indels: 57
0.90 0.07 0.04
Matches are distributed among these distances:
180 159 0.12
182 1 0.00
184 1 0.00
186 1 0.00
187 1 0.00
189 3 0.00
191 3 0.00
192 1 0.00
193 1 0.00
194 1 0.00
196 1 0.00
198 2 0.00
199 8 0.01
200 695 0.52
201 461 0.34
202 9 0.01
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (200 bp):
TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACATTGTTAATTTACCTATTA
CATTA
Found at i:30688 original size:401 final size:400
Alignment explanation
Indices: 29923--31600 Score: 2515
Period size: 401 Copynumber: 4.2 Consensus size: 400
29913 CATTTGGTTT
* * * *
29923 TAATAATGTTTTTCGATGTTTTTGGGATCGAAAATTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* * *
29988 ACTTGGTTTTTAAAATACACTCTGGACAAAAATGTATCGACACTTGTTGGATTTGTATCGATACT
66 ACTTGGTTTTTAAAATACAATATGGAC-AAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* ** **
30053 TCATGTATACTTGTTTTCTCATAAACTAGTATATTTAGACCGGTTACATTGTTAATTTACCTATT
130 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATT
* *
30118 ACATTATAATTATGTTTTTTGATGTTTTCGGGATCGACACTTGTTATAAATGTATCAAAACTTTG
195 ACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTG
** *
30183 TTGTGCACTTGGTTTTTAAAATACAAAATGGACAAAATGTATTGACACTTGTTGGATTTGTGTCG
260 TTGTGCACTTGGTTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTGGATTTGTGTCG
* * * *
30248 ATACTTCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACACTGTTAATTTAC
325 ATACTTCATGTATACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGTTAATTTAC
30313 CTATTACATTA
390 CTATTACATTA
* *
30324 TAATTATGTTTTTTGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
**
30389 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTATATTTGTGTCGATACTT
66 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
30454 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATTA
131 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATTA
* * *
30519 CATTATAATTATATTTTTTGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGT
196 CATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGT
* *
30584 TATGCACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTAGATTTGTGTCG
261 TGTGCACTTGGTTTTTAAAATACAATCTGGAC-AAAATGTATCGACACTTGTTGGATTTGTGTCG
* * *
30649 ATACTTCATGTATACCTGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTAC
325 ATACTTCATGTATACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGTTAATTTAC
*
30714 TTATTACATTA
390 CTATTACATTA
30725 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
30790 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
66 ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
* *
30855 TATGTATACATGTTTTCTAATAAACCGG--TA--T----AT-TT--A--G-------ACCTATTA
131 CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATTA
* * *
30900 CATTATAATTATGTTTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTGT
196 CATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGT
**
30965 TGTGCACTTGGTTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTTTATTTGTGTCGA
261 TGTGCACTTGGTTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGA
** * * *
31030 TACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATGTTTAGACCGGTTACATTGCTAATTTACC
326 TACTTCATGTATACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGTTAATTTACC
31095 TATTACATTA
391 TATTACATTA
* *
31105 TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTCC
1 TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
31170 ACTTGGTTTTTAAAATACAATATGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
66 ACTTGGTTTTTAAAATACAATATGGAC-AAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* *
31235 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACTTGTTACATTGTTAATTTAGCTATT
130 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATT
* *
31300 ACATTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGAAACTTTG
195 ACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTG
* *
31365 TTGTGCACTTGGTTTTTTAAAA-ACACTCTGGACAAAAAGTATCGACACTTGTTGGATTTGTGTC
260 TTGTGCACTTGG-TTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTGGATTTGTGTC
* * *
31429 GATACTTTATGTATACCTGTTTTCTCAAAAACCGGTATATTTTGACCGGTTACATTGTTATTTTA
324 GATACTTCATGTATACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGTTAATTTA
31494 CCTATTACATTA
389 CCTATTACATTA
** * * * *
31506 T-ATCTATGTGTTTT-GATGTTTTTAGTATTGACACTTGTTTTAAATGTATCGACACTCTT-TTC
1 TAAT-TATGT-TTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACT-TTGTT-
** *
31568 GTGCACTTGG-TTTGGAAATACATTATGGACAAA
62 GTGCACTTGGTTTTTAAAATACAATATGGACAAA
31601 TTTATTATGC
Statistics
Matches: 1170, Mismatches: 80, Indels: 55
0.90 0.06 0.04
Matches are distributed among these distances:
380 187 0.16
381 162 0.14
383 2 0.00
385 1 0.00
388 1 0.00
389 1 0.00
390 3 0.00
392 3 0.00
393 2 0.00
394 1 0.00
397 1 0.00
399 2 0.00
400 191 0.16
401 589 0.50
402 24 0.02
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (400 bp):
TAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
ACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGATACTT
CATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAATTTACCTATTA
CATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGT
TGTGCACTTGGTTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGA
TACTTCATGTATACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGTTAATTTACC
TATTACATTA
Found at i:31025 original size:180 final size:180
Alignment explanation
Indices: 30715--31083 Score: 614
Period size: 180 Copynumber: 2.0 Consensus size: 180
30705 TTAATTTACT
*
30715 TATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAAC
1 TATTACATTATAATTATGTTTTTCGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAAC
30780 TTTGTTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGT
66 TTTGTTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGT
*
30845 GTCGATACTTTATGTATACATGTTTTCT-AATAAACCGGTATATTTAGACC
131 GTCGATACTTTATGTACACATGTTTTCTCAA-AAACCGGTATATTTAGACC
* *
30895 TATTACATTATAATTATGTTTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
1 TATTACATTATAATTATGTTTTTCGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAAC
* **
30960 TTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAAATGTATCGACACTTGTTTTATTTGT
66 TTTGTTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGT
* * *
31025 GTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATGTTTAGACC
131 GTCGATACTTTATGTACACATGTTTTCTCAAAAACCGGTATATTTAGACC
**
31075 GGTTACATT
1 TATTACATT
31084 GCTAATTTAC
Statistics
Matches: 176, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
180 174 0.99
181 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (180 bp):
TATTACATTATAATTATGTTTTTCGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAAC
TTTGTTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGT
GTCGATACTTTATGTACACATGTTTTCTCAAAAACCGGTATATTTAGACC
Found at i:31225 original size:581 final size:580
Alignment explanation
Indices: 29923--31484 Score: 2453
Period size: 581 Copynumber: 2.7 Consensus size: 580
29913 CATTTGGTTT
* ** * *
29923 TAATAATGTTTTTCGATGTTTTTGGGATCGAAAATTGTTATAAATGTATCGAAACTTTGTTGTGC
1 TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
* *
29988 ACTTGGTTTTTAAAATACACTCTGGACAAAAATGTATCGACACTTGTTGGATTTGTATCGATACT
66 ACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* * *
30053 TCATGTATACTTGTTTTCTCATAAACTAGTATATTTAGACCGGTTACATTGTTAATTTACCTATT
131 TCATGTATACATGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTA-CTATT
* *
30118 ACATTATAATTATGTTTTTTGATGTTTTCGGGATCGACACTTGTTATAAATGTATCAAAACTTTG
195 ACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTG
* *
30183 TTGTGCACTTGGTTTTTAAAATACAAAATGGACAAAATGTATTGACACTTGTTGGATTTGTGTCG
260 TTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCG
* *
30248 ATACTTCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACCTGTTACACTGTTAATTTAC
325 ATACTTTATGTATACATGTTTTCTAATAAACCGG--TA--T--A--T-TT--A--G-------AC
*
30313 CTATTACATTATAATTATGTTTTTTGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAA
370 CTATTACATTATAATTATGTTTTTCGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAA
30378 CTTTGTTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTATATTTG
435 CTTTGTTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTATATTTG
* * * *
30443 TGTCGATACTTCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACATGTTACATTGTTAA
500 TGTCGATACTTCATGTACACATGTTTTCTCAAAAACCGGTATATTTAGACAGGTTACATTGCTAA
30508 TTTACCTATTACATTA
565 TTTACCTATTACATTA
* * *
30524 TAATTATATTTTTTGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTATGC
1 TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
*
30589 ACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTAGATTTGTGTCGATACT
66 ACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
*
30654 TCATGTATACCTGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTACTTATT
131 TCATGTATACATGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTAC-TATT
30719 ACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTG
195 ACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTG
30784 TTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCG
260 TTGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCG
30849 ATACTTTATGTATACATGTTTTCTAATAAACCGGTATATTTAGACCTATTACATTATAATTATGT
325 ATACTTTATGTATACATGTTTTCTAATAAACCGGTATATTTAGACCTATTACATTATAATTATGT
* *
30914 TTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTT
390 TTTTCGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGCACTTGGTTT
* * **
30979 TTAAAATACAATCTGGACAAAATGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACAC
455 TTAAAATACAATATGGACAAAATGTATCGACACTTGTTATATTTGTGTCGATACTTCATGTACAC
* * *
31044 CTGTTTTCTCAAAAACCGGTATGTTTAGACCGGTTACATTGCTAATTTACCTATTACATTA
520 ATGTTTTCTCAAAAACCGGTATATTTAGACAGGTTACATTGCTAATTTACCTATTACATTA
*
31105 TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTCC
1 TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
*
31170 ACTTGGTTTTTAAAATACAATATGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
66 ACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
* *
31235 TCATGTATACATGTTTTCTCATAAACCGGTATATTTAGACTTGTTACATTGTTAATTTAGCTATT
131 TCATGTATACATGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTA-CTATT
* *
31300 ACATTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGAAACTTTG
195 ACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTG
* * *
31365 TTGTGCACTTGGTTTTTTAAAA-ACACTCTGGACAAAAAGTATCGACACTTGTTGGATTTGTGTC
260 TTGTGCACTTGG-TTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTC
* * **
31429 GATACTTTATGTATACCTGTTTTCTCAA-AAACCGGTATATTTTGACCGGTTACATT
324 GATACTTTATGTATACATGTTTTCT-AATAAACCGGTATATTTAGACCTATTACATT
31485 GTTATTTTAC
Statistics
Matches: 905, Mismatches: 52, Indels: 28
0.92 0.05 0.03
Matches are distributed among these distances:
581 546 0.60
582 12 0.01
588 1 0.00
590 1 0.00
592 2 0.00
593 1 0.00
595 1 0.00
597 1 0.00
599 2 0.00
600 1 0.00
601 337 0.37
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (580 bp):
TAATTATGTTTTTCGATGTTTTCAGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGC
ACTTGGTTTTTAAAATACAATCTGGACAAAAATGTATCGACACTTGTTGGATTTGTGTCGATACT
TCATGTATACATGTTTTCTCATAAACCAGTATATTTAGACCTGTTACATTGTTAATTTACTATTA
CATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGT
TGTGCACTTGGTTTTTAAAATACAATATGGACAAAATGTATCGACACTTGTTGGATTTGTGTCGA
TACTTTATGTATACATGTTTTCTAATAAACCGGTATATTTAGACCTATTACATTATAATTATGTT
TTTCGATATTTTCGGGATCGACACTTGTTATAAATGTATCGAAACTTTGTTGTGCACTTGGTTTT
TAAAATACAATATGGACAAAATGTATCGACACTTGTTATATTTGTGTCGATACTTCATGTACACA
TGTTTTCTCAAAAACCGGTATATTTAGACAGGTTACATTGCTAATTTACCTATTACATTA
Found at i:31782 original size:6 final size:6
Alignment explanation
Indices: 31769--31825 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
31759 ATTTACATTT
* * * * * *
31769 AAATTC AAAATC AAATTT AAATTT AAATTC AAAATC AAATTG AAATTT
1 AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC
31817 AAATTC AAA
1 AAATTC AAA
31826 CTCTAATTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (6 bp):
AAATTC
Found at i:31784 original size:24 final size:24
Alignment explanation
Indices: 31757--31839 Score: 121
Period size: 24 Copynumber: 3.4 Consensus size: 24
31747 AGTGGAGCCG
*
31757 AAATTTACATTTAAATTCAAAATC
1 AAATTTAAATTTAAATTCAAAATC
31781 AAATTTAAATTTAAATTCAAAATC
1 AAATTTAAATTTAAATTCAAAATC
* *
31805 AAATTGAAATTTAAATTCAAACTC
1 AAATTTAAATTTAAATTCAAAATC
*
31829 TAATTATAAAT
1 AAATT-TAAAT
31840 GAAATGAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 49 0.92
25 4 0.08
ACGTcount: A:0.52, C:0.10, G:0.01, T:0.37
Consensus pattern (24 bp):
AAATTTAAATTTAAATTCAAAATC
Found at i:31793 original size:30 final size:30
Alignment explanation
Indices: 31757--31821 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
31747 AGTGGAGCCG
* * *
31757 AAATTTACATTTAAATTCAAAATCAAATTT
1 AAATTTAAATTCAAAATCAAAATCAAATTT
* *
31787 AAATTTAAATTCAAAATCAAATTGAAATTT
1 AAATTTAAATTCAAAATCAAAATCAAATTT
31817 AAATT
1 AAATT
31822 CAAACTCTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (30 bp):
AAATTTAAATTCAAAATCAAAATCAAATTT
Found at i:31809 original size:18 final size:18
Alignment explanation
Indices: 31765--31801 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
31755 CGAAATTTAC
31765 ATTTAAATTCAAAATCAA
1 ATTTAAATTCAAAATCAA
* *
31783 ATTTAAATTTAAATTCAA
1 ATTTAAATTCAAAATCAA
31801 A
1 A
31802 ATCAAATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTTAAATTCAAAATCAA
Found at i:33030 original size:3 final size:3
Alignment explanation
Indices: 33022--33062 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
33012 ACTTGTTTGG
* *
33022 ATC ATC ATC ATC ATC ATC ATC ATC TTC ATC ATC ATC TTC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
33063 TGACCGCTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39
Consensus pattern (3 bp):
ATC
Found at i:34248 original size:15 final size:15
Alignment explanation
Indices: 34223--34266 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
34213 AGGAAGTTGT
*
34223 GGTTGAAAAGAGCTG
1 GGTTGAGAAGAGCTG
* *
34238 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGCTG
34253 GGTTGAGAAGAGCT
1 GGTTGAGAAGAGCT
34267 TTAAGAAAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.27, C:0.05, G:0.48, T:0.20
Consensus pattern (15 bp):
GGTTGAGAAGAGCTG
Found at i:34899 original size:200 final size:198
Alignment explanation
Indices: 34621--35892 Score: 1793
Period size: 199 Copynumber: 6.5 Consensus size: 198
34611 AAAGCAGTAC
* *
34621 ATTTAGACCGGTTACATTGCTAATTTACCTATTACAATATAATTATGGGTTTCGATGTTTCTGGG
1 ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
* *
34686 ATCGGCACTTGTTATAAATGTATCAACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
66 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
* * * ** * **
34751 AAAAAGTATCGATACTTATTTTATTTGTGTCGATAAATTATGTTGACCTGTTTTC-AAATTAAAG
131 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTAAA--AAA-
*
34815 CGGTAC
193 CGGTAT
** * * * * * *
34821 ATTTAGAATGATTACATTGTTAATTTACATATTACATCATAATTATGGCTTTCGATATTTTTGGG
1 ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
34886 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
66 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
* * * * *
34951 AAAAAGTATCGACACTTGTTTGATTTGTGTCGATACTTTGTGTACACCTGTTTTCTCAAAAACTA
131 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAAC-G
35016 GTAT
195 GTAT
* * *
35020 ATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATGTTTTTAGG
1 ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
*
35085 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTATGGAC
66 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
* * *
35150 CAAAAGTATCGACACTTGTTTAATTTGTGTCGATACTTTTTGTTCACCTGTTTTCTCAAAAATCG
131 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCT-AAAAAACG
35215 GTAT
195 GTAT
*
35219 ATTTAGACCGGTTATATTG-TGAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGG
1 ATTTAGACCGGTTACATTGCT-AATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGG
*
35283 GATCGACACTTGTTATAAATGTATCGATACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGA
65 GATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGA
* **
35348 CCAAAAGTTTCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACAAATGTTTTCTAAAAAACT
130 CCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAAC-
35413 GGTAT
194 GGTAT
* * * * *
35418 ATTTAGACCGGTTATATTTCCAATTTATCTATTACATTATAATTATGGGTTTCGATATTTTTGGG
1 ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
* * *
35483 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGATTTTGAAATATATTATGGAC
66 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
* * * *
35548 CAAAAGTATCGACACTTGTTTTATTTGTTTCAATACTTTTTGTACACCTGTTTTCTTAAAAACCG
131 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACGG
*
35613 TGT
196 TAT
* * *
35616 ATTTAGACCGGTTACATTGCTAATTTACCTGTTACATTTTAATTAT-GGTTTCGATATTTTTGGG
1 ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
*
35680 ATCGACACTTGCTATAAATGTAT-----C--------GCACTTGGTTTTGAAATACATTCTGGAC
66 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
* * * * *
35732 CAATAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTATACACATGTTTTCTCAAAACCGG
131 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACGG
35797 TAT
196 TAT
** * *
35800 ATTTAGATTGGTTAAATTGCTAATTTACCTATTACATTATAATTATAGGTTTCGATGTTTTTGGG
1 ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
35865 ATCGACACTTGTTATAAATGTATCGACA
66 ATCGACACTTGTTATAAATGTATCGACA
35893 TATAAGTTTA
Statistics
Matches: 967, Mismatches: 93, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
184 125 0.13
185 39 0.04
192 1 0.00
197 40 0.04
198 51 0.05
199 539 0.56
200 170 0.18
201 2 0.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (198 bp):
ATTTAGACCGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACGG
TAT
Found at i:35829 original size:184 final size:185
Alignment explanation
Indices: 35520--35889 Score: 564
Period size: 184 Copynumber: 2.0 Consensus size: 185
35510 ACTTTTTAGT
* *
35520 GCACTTGATTTTGAAATATATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTTTCAATACT
1 GCACTTGATTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCAATACT
* * * * *
35585 TTTTGTACACCTGTTTTCTTAAAAACCGTGTATTTAGACCGGTTACATTGCTAATTTACCTGTTA
66 TTTTATACACATGTTTTCTTAAAAACCGTATATTTAGACCGGTTAAATTGCTAATTTACCTATTA
*
35650 CATTTTAATTAT-GGTTTCGATATTTTTGGGATCGACACTTGCTATAAATGTATC
131 CATTATAATTATAGGTTTCGATATTTTTGGGATCGACACTTGCTATAAATGTATC
* * * *
35704 GCACTTGGTTTTGAAATACATTCTGGACCAATAGTATCGACACTTGTTTTATTTGTGTCGATACT
1 GCACTTGATTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCAATACT
* **
35769 TTTTATACACATGTTTTC-TCAAAACCGGTATATTTAGATTGGTTAAATTGCTAATTTACCTATT
66 TTTTATACACATGTTTTCTTAAAAACC-GTATATTTAGACCGGTTAAATTGCTAATTTACCTATT
* *
35833 ACATTATAATTATAGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATC
130 ACATTATAATTATAGGTTTCGATATTTTTGGGATCGACACTTGCTATAAATGTATC
35889 G
1 G
35890 ACATATAAGT
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
183 7 0.04
184 119 0.71
185 41 0.25
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (185 bp):
GCACTTGATTTTGAAATACATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCAATACT
TTTTATACACATGTTTTCTTAAAAACCGTATATTTAGACCGGTTAAATTGCTAATTTACCTATTA
CATTATAATTATAGGTTTCGATATTTTTGGGATCGACACTTGCTATAAATGTATC
Found at i:36250 original size:19 final size:19
Alignment explanation
Indices: 36226--36275 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
36216 TTACATTCAC
*
36226 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
36245 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
36264 ATACAAAATTAA
1 ATACAAAATTAA
36276 CCCTGCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:37778 original size:21 final size:18
Alignment explanation
Indices: 37740--37778 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
37730 TTCTCCTCAT
37740 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
*
37758 TTCCTCCATCTTCTCTTC
1 TTCCTCCATCTTTTCTTC
37776 TTC
1 TTC
37779 AAATTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.41, G:0.00, T:0.54
Consensus pattern (18 bp):
TTCCTCCATCTTTTCTTC
Found at i:38473 original size:22 final size:21
Alignment explanation
Indices: 38445--38501 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
38435 AACCTGCATT
*
38445 TATAATAAAAGTTATCATTTTA
1 TATAATAAAA-CTATCATTTTA
38467 TATAATAACTATACTATCATTTTA
1 TATAATAA--A-ACTATCATTTTA
*
38491 TATAAAAAAAC
1 TATAATAAAAC
38502 AAAAACATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 9 0.30
24 18 0.60
25 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (21 bp):
TATAATAAAACTATCATTTTA
Found at i:39823 original size:31 final size:31
Alignment explanation
Indices: 39790--39975 Score: 319
Period size: 31 Copynumber: 6.2 Consensus size: 31
39780 GGTCACAATA
*
39790 TAAACTGTTCATATGTGCCTTTAAACATATA
1 TAAACTGTTCATATGTGCCTTTAAACATATG
39821 TAAA---TTCATATGTGCCTTTAAACATA--
1 TAAACTGTTCATATGTGCCTTTAAACATATG
39847 TAAACTGTTCATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
39878 TAAACTGTTCATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
39909 TAAACTGTTCATATGTGCCTTTAAACATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
*
39940 TAAACTGTTCATATGTGCCTTTAAATATATG
1 TAAACTGTTCATATGTGCCTTTAAACATATG
39971 TAAAC
1 TAAAC
39976 CCTCGACTCT
Statistics
Matches: 149, Mismatches: 1, Indels: 10
0.93 0.01 0.06
Matches are distributed among these distances:
26 4 0.03
28 22 0.15
29 22 0.15
31 101 0.68
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (31 bp):
TAAACTGTTCATATGTGCCTTTAAACATATG
Found at i:39877 original size:16 final size:16
Alignment explanation
Indices: 39856--39940 Score: 56
Period size: 16 Copynumber: 5.4 Consensus size: 16
39846 ATAAACTGTT
39856 CATATGTGCCTTTAAA
1 CATATGTGCCTTTAAA
**
39872 CATATGTAAACTGTT---
1 CATATGT-GCCT-TTAAA
39887 CATATGTGCCTTTAAA
1 CATATGTGCCTTTAAA
**
39903 CATATGTAAACTGTT---
1 CATATGT-GCCT-TTAAA
39918 CATATGTGCCTTTAAA
1 CATATGTGCCTTTAAA
39934 CATATGT
1 CATATGT
39941 AAACTGTTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 20
0.65 0.10 0.25
Matches are distributed among these distances:
13 4 0.08
14 4 0.08
15 14 0.27
16 21 0.41
17 4 0.08
18 4 0.08
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (16 bp):
CATATGTGCCTTTAAA
Found at i:39892 original size:15 final size:15
Alignment explanation
Indices: 39872--39955 Score: 50
Period size: 15 Copynumber: 5.5 Consensus size: 15
39862 TGCCTTTAAA
39872 CATATGTAAACTGTT
1 CATATGTAAACTGTT
**
39887 CATATGT-GCCT-TT
1 CATATGTAAACTGTT
39900 AAACATATGTAAACTGTT
1 ---CATATGTAAACTGTT
**
39918 CATATGT-GCCT-TT
1 CATATGTAAACTGTT
39931 AAACATATGTAAACTGTT
1 ---CATATGTAAACTGTT
39949 CATATGT
1 CATATGT
39956 GCCTTTAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 20
0.65 0.10 0.25
Matches are distributed among these distances:
13 4 0.08
14 4 0.08
15 21 0.41
16 14 0.27
17 4 0.08
18 4 0.08
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (15 bp):
CATATGTAAACTGTT
Found at i:40131 original size:12 final size:12
Alignment explanation
Indices: 40114--40149 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
40104 TATCATGTTC
40114 TCATATCACATG
1 TCATATCACATG
*
40126 TCATATCACATA
1 TCATATCACATG
40138 TCATATCACATG
1 TCATATCACATG
40150 AACATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (12 bp):
TCATATCACATG
Found at i:40635 original size:45 final size:44
Alignment explanation
Indices: 40540--40643 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 44
40530 TGCACTCCTT
* *
40540 ATGCATCGATGCACCGATTGCATTCGATGTTTCACTATTAATGGG
1 ATGCATCGATGCA-CGATTGCATTCGATGTTTCACTATTAAAGAG
* *
40585 ATGCATCGATGCACGAATTGCATTCGATGTATTTA-TTTTAAA-AG
1 ATGCATCGATGCACG-ATTGCATTCGATGT-TTCACTATTAAAGAG
40629 AGTGCATCGATGCAC
1 A-TGCATCGATGCAC
40644 TACCAATGCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
44 4 0.08
45 45 0.87
46 3 0.06
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (44 bp):
ATGCATCGATGCACGATTGCATTCGATGTTTCACTATTAAAGAG
Found at i:42092 original size:19 final size:19
Alignment explanation
Indices: 42062--42126 Score: 94
Period size: 19 Copynumber: 3.4 Consensus size: 19
42052 CTTTTATACA
* *
42062 ACCTAAAATATCATTTTCT
1 ACCTATAATATCATTTTTT
*
42081 ATCTATAATATCATTTTTT
1 ACCTATAATATCATTTTTT
*
42100 ACCTATTATATCATTTTTT
1 ACCTATAATATCATTTTTT
42119 ACCTATAA
1 ACCTATAA
42127 ATATTAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (19 bp):
ACCTATAATATCATTTTTT
Found at i:42835 original size:183 final size:181
Alignment explanation
Indices: 42517--43357 Score: 973
Period size: 182 Copynumber: 4.6 Consensus size: 181
42507 TACGCGTACT
* * **
42517 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTGCTTTACCGGTTTTGTCATTTTGAGA-TC
1 TATTAAATTATCGACACTTTCAACATATCCGGTAGT-TTTTACCTATTTTGTCATTTTGAGACT-
* * * * *
42581 GGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCTATACATTTT-TTAAAAATATCGATT
64 GGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTTCAT-AAAGTATCGA-C
42645 A-TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTATCGATACTTA
127 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTATCGATACTTA
* * * *
42699 TATTAAATTATCAATACTTTCAACATATTCGATA-TATTTATACCTATTTTGTCATTTTTGAGAC
1 TATTAAATTATCGACACTTTCAACATATCCGGTAGT-TTT-TACCTATTTTGTCA-TTTTGAGAC
* * * * *
42763 TTGTTTTGTCATATTTTTACCTGTTATATTATTATAGATCAATATATTTT-TTAAAAGTATCGAC
63 TGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTTCAT-AAAGTATCGAC
* *
42827 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAACTCATAAAGTATCGATACTTA
127 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTA
* * * * * * *
42882 TATGAAAGTATCGACACTTTCAACATATCTGGTAGTTATTTACATGTTTTGTAATTTTGAGACCG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAGTT-TTTACCTATTTTGTCATTTTGAGACTG
* * ** **
42947 ATTTTGTCATATTTTTAGCTGTTATATTGTTATGGATTGATACATTTTCATAAAGCGTCGACACT
65 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTTCATAAAGTATCGACACT
* * *
43012 TTTTAGGCGCTATAACTTATTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
130 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTA
* *
43064 TATTAAATTATCGACACTTTCAACATATCCGGTATCTTTTTA-CTAGTTTTGTCATTTTTAAGAC
1 TATTAAATTATCGACACTTTCAACATATCCGGTA-GTTTTTACCTA-TTTTGTCA-TTTTGAGAC
* * *
43128 AT-GTTTTATCATA-TTTTACCTGTTATATTGTTATGGATCAATACATTTTCATAAAGTGTCGAT
63 -TGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTTCATAAAGTATCGAC
* * *
43191 ACTTT-TAGGCACTATAACTTCTTCTCTTTTAAATTTAGAAAGTTTCGATACTTA
127 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTA
* * ** * * *
43245 TATTAAATTATCGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCATTTTGGGACCG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAG-TTTTTACCTATTTTGTCATTTTGAGACTG
* ** * *
43310 GTTTTGTCATATTTTTACCTGTAATATTACTATGGAGCGATACATTTT
65 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTT
43358 TCATTTGTAT
Statistics
Matches: 563, Mismatches: 80, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
180 17 0.03
181 125 0.22
182 246 0.44
183 171 0.30
184 4 0.01
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (181 bp):
TATTAAATTATCGACACTTTCAACATATCCGGTAGTTTTTACCTATTTTGTCATTTTGAGACTGG
TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTTCATAAAGTATCGACACTT
TATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTA
Found at i:52078 original size:60 final size:61
Alignment explanation
Indices: 51991--52117 Score: 159
Period size: 60 Copynumber: 2.1 Consensus size: 61
51981 GTTTGAGAAC
* * * * * *
51991 AAATTGGAATGTTAATAAAGTTTGGGGA-TCAATTTAGAATGAAAGTCATAGTTTATGGGTG
1 AAATTAGAATGTTAATAAAGGTTGGGGACT-AATTTAAAATGAAAGTCATAATTTAAGGATG
* *
52052 AAATTAGAATGTTAA-AAGGGTTGGGGACTAATTTAAAATGATAGTCATAATTTAAGGATG
1 AAATTAGAATGTTAATAAAGGTTGGGGACTAATTTAAAATGAAAGTCATAATTTAAGGATG
52112 AAATTA
1 AAATTA
52118 AAACATTTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
60 42 0.74
61 15 0.26
ACGTcount: A:0.40, C:0.03, G:0.24, T:0.33
Consensus pattern (61 bp):
AAATTAGAATGTTAATAAAGGTTGGGGACTAATTTAAAATGAAAGTCATAATTTAAGGATG
Found at i:59500 original size:2 final size:2
Alignment explanation
Indices: 59491--59532 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
59481 TTTTTGACAC
59491 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59532 T
1 T
59533 TCATGTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:63690 original size:31 final size:30
Alignment explanation
Indices: 63643--63701 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
63633 CTTTACTATT
*
63643 TTTTTCCTTTATCTTATTT-ATTTATTTTA
1 TTTTTCCTTTACCTTATTTGATTTATTTTA
*
63672 TTTTTCACTTTTACCTTATTTGTTTTATTT
1 TTTTTC-C-TTTACCTTATTTGATTTATTT
63702 ACCTTGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.24
30 1 0.04
31 11 0.44
32 7 0.28
ACGTcount: A:0.15, C:0.12, G:0.02, T:0.71
Consensus pattern (30 bp):
TTTTTCCTTTACCTTATTTGATTTATTTTA
Found at i:65533 original size:22 final size:21
Alignment explanation
Indices: 65488--65533 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
65478 TACATTTTTG
**
65488 CATTTTTTGCATCTTCATCTA
1 CATTTTTTGCATCTTCATAAA
*
65509 CATTTTTTAGCATTTTCATAAA
1 CATTTTTT-GCATCTTCATAAA
65531 CAT
1 CAT
65534 GAAATTTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.26, C:0.20, G:0.04, T:0.50
Consensus pattern (21 bp):
CATTTTTTGCATCTTCATAAA
Found at i:66710 original size:20 final size:20
Alignment explanation
Indices: 66658--66726 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
66648 CAAAAAGGGC
*
66658 AAAAAGAAAAAAGAAAAGAAGCA
1 AAAAAG-AAAAA-ACAAGAA-CA
66681 AAAAATGAAAAAACAAGAACA
1 AAAAA-GAAAAAACAAGAACA
* * *
66702 AAAAAGAAAGAACAAAAATA
1 AAAAAGAAAAAACAAGAACA
66722 AAAAA
1 AAAAA
66727 AGGGAACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 17 0.41
21 7 0.17
22 6 0.15
23 10 0.24
24 1 0.02
ACGTcount: A:0.80, C:0.06, G:0.12, T:0.03
Consensus pattern (20 bp):
AAAAAGAAAAAACAAGAACA
Found at i:68274 original size:36 final size:36
Alignment explanation
Indices: 68227--68331 Score: 165
Period size: 36 Copynumber: 2.9 Consensus size: 36
68217 GTGCTCACCA
68227 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
*
68263 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAACT
* * *
68300 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
68332 TAAACATTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 32 0.50
37 32 0.50
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
Found at i:68321 original size:37 final size:37
Alignment explanation
Indices: 68227--68336 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
68217 GTGCTCACCA
68227 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACT
*
68263 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACT
* * *
68300 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-AAAC
68337 ATTGAAAACA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
36 31 0.46
37 33 0.49
38 3 0.04
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACT
Found at i:68515 original size:37 final size:37
Alignment explanation
Indices: 68447--68534 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
68437 CATTGGAAAC
** * *
68447 ATTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATA
1 ATTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACA
*
68483 GTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACA
1 ATTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACA
68520 ATTTCTCC-TGAAACA
1 ATTTC-CCTTGAAACA
68535 TAAACATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 12 0.27
37 30 0.68
38 2 0.05
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (37 bp):
ATTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACA
Found at i:68562 original size:102 final size:102
Alignment explanation
Indices: 68245--68702 Score: 627
Period size: 102 Copynumber: 4.5 Consensus size: 102
68235 CTTGAGACAG
** * * *
68245 TTTCCCTTGAAACAAACTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTTTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
68310 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* *
68347 TTTCCCTTGAAATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAGAA-AAAAATTT-TCTCCC
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGA-AACAAAATTTTGTCTCCC
*
68410 TTGAGACAGTTTCTCTTGAAACATAAACATTGGAAACA
65 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
68448 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
* *
68513 TGAGACAATTTCTCCTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* * *
68550 TTTCCCTAGAAATGAATTTCGTCTCTCTTGAGATAATTTCCCTTGAAAC-AAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
* * * * ***
68614 TGAGACAGCTTCTCTTGAAACACAAAACCTTTGAGATTG
66 TGAGACAGTTTCTCTTGAAACA-TAAA-CATTGAAAACA
* ** * *
68653 TTTCCCTCGAAAAAAATTTTGTCTC-CTATGAGACAGTTTCTCTTGAAACA
1 TTTCCCTTGAAATGAATTTTGTCTCTCT-TGAGATAGTTTCCCTTGAAACA
68703 CAAAATCTTT
Statistics
Matches: 318, Mismatches: 31, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
100 2 0.01
101 129 0.41
102 140 0.44
103 47 0.15
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (102 bp):
TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:68594 original size:203 final size:205
Alignment explanation
Indices: 68245--68702 Score: 663
Period size: 203 Copynumber: 2.2 Consensus size: 205
68235 CTTGAGACAG
* * *
68245 TTTCCCTTGAAACAAACTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTTTCTCCCT
1 TTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
* * * * *
68310 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTCTCTCT
66 TGAGACAATTTCTCCTGAAACATAAACATTGAAAACATTTCCCTAGAAATGAATTTCGTCTCTCT
* * *
68375 TGAGATAGTTTCCCTTGAGAAAAAAATTT-TCTCCCTTGAGACAGTTTCTCTTGAAACA-TAAAC
131 TGAGATAATTTCCCTTGA-AAAAAAATTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAAC
68438 ATTGGA-AACA
195 ATTGGAGAACA
** *
68448 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
1 TTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
68513 TGAGACAATTTCTCCTGAAACATAAACATTGAAAACATTTCCCTAGAAATGAATTTCGTCTCTCT
66 TGAGACAATTTCTCCTGAAACATAAACATTGAAAACATTTCCCTAGAAATGAATTTCGTCTCTCT
* * *
68578 TGAGATAATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAACC
131 TGAGATAATTTCCCTTGAAAAAAAATTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAACA
* ***
68643 TTTGAGATTG
196 TTGGAGAACA
* *
68653 TTTCCCTCGAAAAAAATTTTGTCTC-CTATGAGACAGTTTCTCTTGAAACA
1 TTTCCCTTGAAAAAAATTTTGTCTCTCT-TGAGACAGTTTCCCTTGAAACA
68703 CAAAATCTTT
Statistics
Matches: 226, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
202 8 0.04
203 165 0.73
204 10 0.04
205 43 0.19
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (205 bp):
TTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAATTTCTCCTGAAACATAAACATTGAAAACATTTCCCTAGAAATGAATTTCGTCTCTCT
TGAGATAATTTCCCTTGAAAAAAAATTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAACA
TTGGAGAACA
Found at i:68604 original size:36 final size:36
Alignment explanation
Indices: 68549--68618 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
68539 CATTGAAAAC
** *
68549 ATTTCCCTAGAAATGAATTTCGTCTCTCTTGAGATA
1 ATTTCCCTAGAAACAAATTTCGTCTCCCTTGAGATA
* *
68585 ATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGA
1 ATTTCCCTAGAAACAAATTTCGTCTCCCTTGAGA
68619 CAGCTTCTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (36 bp):
ATTTCCCTAGAAACAAATTTCGTCTCCCTTGAGATA
Found at i:68631 original size:36 final size:36
Alignment explanation
Indices: 68564--68635 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
68554 CCTAGAAATG
* * *
68564 AATTTCGTCTCTCTTGAGATAATTTCCCTTGAAACA
1 AATTTCGTCTCCCTTGAGACAACTTCCCTTGAAACA
* * *
68600 AATTTTGTCTCCCTTGAGACAGCTTCTCTTGAAACA
1 AATTTCGTCTCCCTTGAGACAACTTCCCTTGAAACA
68636 CAAAACCTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (36 bp):
AATTTCGTCTCCCTTGAGACAACTTCCCTTGAAACA
Found at i:68726 original size:67 final size:67
Alignment explanation
Indices: 68577--68714 Score: 206
Period size: 67 Copynumber: 2.1 Consensus size: 67
68567 TTCGTCTCTC
** * *
68577 TTGAGATAATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAAC
1 TTGAGATTGTTTCCCTCGAAAAAAATTTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAAC
68642 CT
66 CT
*
68644 TTGAGATTGTTTCCCTCGAAAAAAATTTTGTCT-CCTATGAGACAGTTTCTCTTGAAACACAAAA
1 TTGAGATTGTTTCCCTCGAAAAAAATTTTGTCTCCCT-TGAGACAGCTTCTCTTGAAACACAAAA
*
68708 TCT
65 CCT
68711 TTGA
1 TTGA
68715 ATTTATCTCC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 3 0.05
67 61 0.95
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (67 bp):
TTGAGATTGTTTCCCTCGAAAAAAATTTTGTCTCCCTTGAGACAGCTTCTCTTGAAACACAAAAC
CT
Found at i:69930 original size:105 final size:104
Alignment explanation
Indices: 69600--70640 Score: 1532
Period size: 105 Copynumber: 10.0 Consensus size: 104
69590 ATATCGTGGC
* * ** * * *
69600 ACTCGAGACAACACAAGTTCAACTTCAAAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCC
*
69665 AATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGG
65 AA-TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
69706 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAA-CAACAA-CTTCC
*
69771 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
64 CAA-TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
69813 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
69878 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
69918 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
69983 ATCTCAGAGCCAATTTCAACTTCATAACGAAGGATATTGG
66 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
70023 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
70084 ATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
70123 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
70188 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
70228 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
70289 ATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
70328 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGTTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
70393 ATCCCAGAGCCAATTTCAACTTCACAACGAA-GATATTGG
66 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
70432 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
**
70493 ATTCAGATTCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * *
70532 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCC
** * * *
70597 GGTTCCAGAGTCAATTTCAACTTCACGACGGAGGATATTGG
65 AATT-CAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
70638 ACT
1 ACT
70641 TGGAACAATG
Statistics
Matches: 867, Mismatches: 48, Indels: 40
0.91 0.05 0.04
Matches are distributed among these distances:
99 25 0.03
100 236 0.27
101 11 0.01
102 10 0.01
103 10 0.01
104 71 0.08
105 317 0.37
106 93 0.11
107 94 0.11
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (104 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:70173 original size:205 final size:205
Alignment explanation
Indices: 69600--70640 Score: 1602
Period size: 205 Copynumber: 5.0 Consensus size: 205
69590 ATATCGTGGC
* * ** * *
69600 ACTCGAGACAACACAAGTTCAACTTCAAAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AA-AA-TT-TC
* *
69665 AATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
62 -A-TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACT
* * * *
69730 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCCCAATTTCAGAGCCAATTTCAACTT
125 TCACGACGAAGGGACCGCTGCTTGTCAA-CAACAACTTT-CCAATCTCAGAGCCAATTTCAACTT
*
69795 CACAGCGAAGGATATTGG
188 CACAACGAAGGATATTGG
* * *
69813 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-
69878 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTT
62 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTT
*
69943 CACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCAT
126 CACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCAC
70008 AACGAAGGATATTGG
191 AACGAAGGATATTGG
70023 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
*
70088 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
70153 CGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGA
131 CGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGA
70218 AGGATATTGG
196 AGGATATTGG
70228 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
*
70293 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
* * *
70358 CGAAGGGACCGCTGTTTGTCAACAACAACTTCCCAATCCCAGAGCCAATTTCAACTTCACAACGA
131 CGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGA
70423 A-GATATTGG
196 AGGATATTGG
70432 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
** * ** *
70497 AGATTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAA
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
* * ** * *
70562 CGAAGGGACAGCTGGTTGTCAACAAACAA-TTTCCCGGT-TCCAGAGTCAATTTCAACTTCACGA
131 CGAAGGGACCGCTGCTTGTCAAC-AACAACTTT-CCAATCT-CAGAGCCAATTTCAACTTCACAA
*
70625 CGGAGGATATTGG
193 CGAAGGATATTGG
70638 ACT
1 ACT
70641 TGGAACAATG
Statistics
Matches: 784, Mismatches: 39, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
204 154 0.20
205 365 0.47
206 13 0.02
207 1 0.00
208 2 0.00
209 2 0.00
210 93 0.12
211 9 0.01
212 98 0.12
213 47 0.06
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (205 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCATTC
AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGA
AGGATATTGG
Found at i:70183 original size:310 final size:311
Alignment explanation
Indices: 69600--70640 Score: 1559
Period size: 310 Copynumber: 3.3 Consensus size: 311
69590 ATATCGTGGC
* * * * * *
69600 ACTCGAGACAACACAAGTTCAACTTCAAAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAAACAATTTC-C
*
69665 AATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
65 AA-TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
* * *
69730 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCCCAATTTCAGAGCCAATTTCAACTT
129 TCACGACGAAGGGACCGCTGCTTGTCAA-CAACAACTTT--CAA-TTCAGAGCCAATTTCAACTT
*
69795 CACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
190 CACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTT
69860 GTCAACAACAACTTCCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
255 GTCAACAACAACTT-CCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
69918 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAAACAA-TTTCC
*
69982 AATCTCAGAGCCAATTTCAACTTCATAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
65 AAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
70047 TCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TTTC-ATTCAGAGCCAATTTCAACTTCACA
129 TCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCAATTCAGAGCCAATTTCAACTTCACA
70109 GCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCA
194 GCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCA
70174 ACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
259 ACAACAAC-TTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
70228 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AA-AATTT-C-
1 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAAACAATTTCCA
* *
70289 ATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTC
66 ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* * *
70354 ACGACGAAGGGACCGCTGTTTGTCAACAACAACTTCCCAATCCCAGAGCCAATTTCAACTTCACA
131 ACGACGAAGGGACCGCTGCTTGTCAACAACAACTT-TCAAT-TCAGAGCCAATTTCAACTTCACA
* *
70419 ACGAA-GATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCA
194 GCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCA
* **
70483 ACAA-AA-TTTC-AT-TCAGATTCAATTTCAACTTCACAACGAAGGATATTGG
259 ACAACAACTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
70532 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAAACAATTT-CC
** * * *
70597 GGTTCCAGAGTCAATTTCAACTTCACGACGGAGGATATTGGACT
65 AATT-CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
70641 TGGAACAATG
Statistics
Matches: 674, Mismatches: 35, Indels: 36
0.90 0.05 0.05
Matches are distributed among these distances:
304 83 0.12
305 92 0.14
306 12 0.02
307 3 0.00
308 7 0.01
309 68 0.10
310 254 0.38
311 3 0.00
312 1 0.00
314 3 0.00
315 2 0.00
316 3 0.00
317 94 0.14
318 49 0.07
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (311 bp):
ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAAACAATTTCCA
ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
ACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCAATTCAGAGCCAATTTCAACTTCACAGC
GAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC
AACAACTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:71670 original size:15 final size:14
Alignment explanation
Indices: 71638--71675 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
71628 ATTATATGGA
71638 TATT-TTATTCATT
1 TATTATTATTCATT
*
71651 TATTATTATTTATGT
1 TATTATTATTCAT-T
71666 TATTATTATT
1 TATTATTATT
71676 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.18
14 7 0.32
15 11 0.50
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (14 bp):
TATTATTATTCATT
Found at i:72195 original size:31 final size:30
Alignment explanation
Indices: 72148--72206 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
72138 CTTTACTATT
*
72148 TTTTTCCTTTATCTTATTT-ATTTATTTTA
1 TTTTTCCTTTACCTTATTTGATTTATTTTA
*
72177 TTTTTCACTTTTACCTTATTTGTTTTATTT
1 TTTTTC-C-TTTACCTTATTTGATTTATTT
72207 ACCTTGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.24
30 1 0.04
31 11 0.44
32 7 0.28
ACGTcount: A:0.15, C:0.12, G:0.02, T:0.71
Consensus pattern (30 bp):
TTTTTCCTTTACCTTATTTGATTTATTTTA
Found at i:78218 original size:175 final size:175
Alignment explanation
Indices: 77927--78278 Score: 704
Period size: 175 Copynumber: 2.0 Consensus size: 175
77917 ACTTCAGTTG
77927 AGAAGGCAGCCTCAGTATTTAGCTTAAAGCTGGATAGTGGACACAAATTGTTTTGCCCTTGGATT
1 AGAAGGCAGCCTCAGTATTTAGCTTAAAGCTGGATAGTGGACACAAATTGTTTTGCCCTTGGATT
77992 GACAATGTCTGTGATGAAAGACTGGCCGAATTTCCTCCCACTGTGCCTGCTGATTTAGTTGATAA
66 GACAATGTCTGTGATGAAAGACTGGCCGAATTTCCTCCCACTGTGCCTGCTGATTTAGTTGATAA
78057 ATTCCGGGCGAGATCCAACCCACTCTTTCAACTTATAACTCTTCC
131 ATTCCGGGCGAGATCCAACCCACTCTTTCAACTTATAACTCTTCC
78102 AGAAGGCAGCCTCAGTATTTAGCTTAAAGCTGGATAGTGGACACAAATTGTTTTGCCCTTGGATT
1 AGAAGGCAGCCTCAGTATTTAGCTTAAAGCTGGATAGTGGACACAAATTGTTTTGCCCTTGGATT
78167 GACAATGTCTGTGATGAAAGACTGGCCGAATTTCCTCCCACTGTGCCTGCTGATTTAGTTGATAA
66 GACAATGTCTGTGATGAAAGACTGGCCGAATTTCCTCCCACTGTGCCTGCTGATTTAGTTGATAA
78232 ATTCCGGGCGAGATCCAACCCACTCTTTCAACTTATAACTCTTCC
131 ATTCCGGGCGAGATCCAACCCACTCTTTCAACTTATAACTCTTCC
78277 AG
1 AG
78279 TAATTTCATA
Statistics
Matches: 177, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 177 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (175 bp):
AGAAGGCAGCCTCAGTATTTAGCTTAAAGCTGGATAGTGGACACAAATTGTTTTGCCCTTGGATT
GACAATGTCTGTGATGAAAGACTGGCCGAATTTCCTCCCACTGTGCCTGCTGATTTAGTTGATAA
ATTCCGGGCGAGATCCAACCCACTCTTTCAACTTATAACTCTTCC
Found at i:80659 original size:6 final size:6
Alignment explanation
Indices: 80644--80677 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
80634 ATTCAATATT
80644 TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
80678 TTGCTTCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:82427 original size:20 final size:20
Alignment explanation
Indices: 82411--82493 Score: 112
Period size: 20 Copynumber: 4.1 Consensus size: 20
82401 TTCGCAATGT
82411 GAATAAGTAAATCGCAACGC
1 GAATAAGTAAATCGCAACGC
** *
82431 GAATTGGGAAAATCGCAACGC
1 GAA-TAAGTAAATCGCAACGC
* *
82452 GGATAAGTAAATCGCAATGC
1 GAATAAGTAAATCGCAACGC
82472 GAATAAGTAAATCGCAACGC
1 GAATAAGTAAATCGCAACGC
82492 GA
1 GA
82494 TACTTACTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
20 36 0.69
21 16 0.31
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (20 bp):
GAATAAGTAAATCGCAACGC
Found at i:82459 original size:41 final size:40
Alignment explanation
Indices: 82413--82492 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
82403 CGCAATGTGA
**
82413 ATAAGTAAATCGCAACGCGAATTGGGAAAATCGCAACGCGG
1 ATAAGTAAATCGCAACGCGAA-TAAGAAAATCGCAACGCGG
* *
82454 ATAAGTAAATCGCAATGCGAATAAGTAAATCGCAACGCG
1 ATAAGTAAATCGCAACGCGAATAAGAAAATCGCAACGCG
82493 ATACTTACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 15 0.43
41 20 0.57
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (40 bp):
ATAAGTAAATCGCAACGCGAATAAGAAAATCGCAACGCGG
Found at i:82505 original size:20 final size:20
Alignment explanation
Indices: 82482--82575 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
82472 GAATAAGTAA
*
82482 ATCGCAACGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* ** **
82502 ATCGCAATGCGATAACACAAA
1 ATCGCAACGCGAT-ACTGACT
*
82523 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
82543 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
82563 TTCGCAACGCGAT
1 ATCGCAACGCGAT
82576 TTACATAGCG
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 45 0.76
21 14 0.24
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:82506 original size:40 final size:42
Alignment explanation
Indices: 82439--82554 Score: 114
Period size: 41 Copynumber: 2.8 Consensus size: 42
82429 GCGAATTGGG
** * *
82439 AAAATCGCAACGCGGATAAGTA-AATCGCAATGCGAAT-A-AG
1 AAAATCGCAACGC-GATACTTACTATCGCAATGCGAATAACAC
*
82479 TAAATCGCAACGCGATACTTACTATCGCAATGCG-ATAACAC
1 AAAATCGCAACGCGATACTTACTATCGCAATGCGAATAACAC
* * * *
82520 AAAATCGCAACGAGATACTGACTTTCGCAACGCGA
1 AAAATCGCAACGCGATACTTACTATCGCAATGCGA
82555 TTCTGACTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 8 0.13
40 24 0.39
41 30 0.48
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (42 bp):
AAAATCGCAACGCGATACTTACTATCGCAATGCGAATAACAC
Found at i:83131 original size:19 final size:19
Alignment explanation
Indices: 83093--83159 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
83083 TTCGAGAATG
83093 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
83113 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
83132 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
83151 AAAATCGCA
1 AAAATCGCA
83160 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 30 0.73
20 11 0.27
ACGTcount: A:0.48, C:0.25, G:0.16, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:83177 original size:19 final size:19
Alignment explanation
Indices: 83155--83300 Score: 105
Period size: 19 Copynumber: 8.1 Consensus size: 19
83145 GAAACCAAAA
*
83155 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
83174 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
83193 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
83209 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
83226 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
83240 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
83259 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
* *
83279 ATCTCGTTGCGATTTTTATT
1 -TCGCGTTGCGATTTTCATT
83299 TC
1 TC
83301 AACCAAAAGA
Statistics
Matches: 101, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
14 20 0.20
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 42 0.42
20 30 0.30
21 1 0.01
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:83225 original size:33 final size:33
Alignment explanation
Indices: 83188--83275 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
83178 GTTGCGATTT
* *
83188 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
83221 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
83254 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
83276 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:83277 original size:20 final size:20
Alignment explanation
Indices: 83243--83292 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
83233 GCGATTCTCT
**
83243 CGTTGCGATAGTCATT-TCCG
1 CGTTGCGATTCTCATTAT-CG
*
83263 CGTTGCGATTCTCATTATCT
1 CGTTGCGATTCTCATTATCG
83283 CGTTGCGATT
1 CGTTGCGATT
83293 TTTATTTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.40
Consensus pattern (20 bp):
CGTTGCGATTCTCATTATCG
Found at i:85360 original size:42 final size:42
Alignment explanation
Indices: 85300--85422 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
85290 GCCCGACTCG
* * *
85300 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
85342 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
85384 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
85423 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:85380 original size:21 final size:21
Alignment explanation
Indices: 85356--85422 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
85346 TCATTCCTCG
85356 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
85377 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
85398 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
85419 AGAG
1 AGAG
85423 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:86817 original size:14 final size:14
Alignment explanation
Indices: 86768--86817 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
86758 TGCTTATTTT
*
86768 TTGA-TTGTTTAA-
1 TTGATTTGTTAAAG
*
86780 TTGATTTGTAAAAG
1 TTGATTTGTTAAAG
*
86794 GTGATTTGTTAAAG
1 TTGATTTGTTAAAG
86808 TTGATTTGTT
1 TTGATTTGTT
86818 TAATTGATGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
12 4 0.13
13 6 0.19
14 21 0.68
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (14 bp):
TTGATTTGTTAAAG
Found at i:86967 original size:19 final size:19
Alignment explanation
Indices: 86943--87001 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
86933 GAAATTAGCG
86943 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
86962 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
86976 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
86995 TTGCGAT
1 TTGCGAT
87002 AGTAATTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
16 7 0.21
17 7 0.21
19 13 0.39
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:86967 original size:33 final size:34
Alignment explanation
Indices: 86924--87000 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 34
86914 AAAAGTACTA
*
86924 TCGCAATGCGAAAT-TAGCGTTGCGATTTTCATT
1 TCGCATTGCGAAATCTAGCGTTGCGATTTTCATT
* **
86957 TCGCATTGCG-ATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATCTAGCGTTGCGATTTTCATT
86990 TCGCATTGCGA
1 TCGCATTGCGA
87001 TAGTAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.05
33 36 0.95
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (34 bp):
TCGCATTGCGAAATCTAGCGTTGCGATTTTCATT
Found at i:89310 original size:12 final size:12
Alignment explanation
Indices: 89293--89317 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
89283 TCTTCGGGGA
89293 CTTTTTCTTCTT
1 CTTTTTCTTCTT
89305 CTTTTTCTTCTT
1 CTTTTTCTTCTT
89317 C
1 C
89318 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:89526 original size:24 final size:24
Alignment explanation
Indices: 89492--89545 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
89482 CTGAAACATC
* *
89492 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
89516 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
89540 ATCAAA
1 ATCAAA
89546 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:90630 original size:20 final size:20
Alignment explanation
Indices: 90602--90642 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
90592 ATTCATTTGA
90602 CTATCGCAACACGAAAATGG
1 CTATCGCAACACGAAAATGG
* *
90622 CTATTGCAACGCGAAAATGG
1 CTATCGCAACACGAAAATGG
90642 C
1 C
90643 AATGCGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (20 bp):
CTATCGCAACACGAAAATGG
Found at i:92703 original size:20 final size:19
Alignment explanation
Indices: 92668--92734 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
92658 GAAACTTAAA
92668 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
92687 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
92707 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
92726 ATCGCAACG
1 ATCGCAACG
92735 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:92742 original size:14 final size:14
Alignment explanation
Indices: 92723--92780 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
92713 ATGCGAAATG
92723 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
92737 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
92753 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
92769 AAAATTGCAACG
1 AAAATCGCAACG
92781 TGAAACATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:92765 original size:32 final size:33
Alignment explanation
Indices: 92707--92785 Score: 124
Period size: 32 Copynumber: 2.4 Consensus size: 33
92697 GGAAATGGCT
*
92707 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
92740 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
* *
92772 ATTGCAACGTGAAA
1 ATCGCAACGCGAAA
92786 CATAAATCGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
32 28 0.65
33 15 0.35
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:92819 original size:19 final size:19
Alignment explanation
Indices: 92792--92912 Score: 101
Period size: 19 Copynumber: 6.6 Consensus size: 19
92782 GAAACATAAA
*
92792 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
92811 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
92827 T--CGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
92843 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
92862 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
92881 TCCGCGTTGCGATAGTCATTT
1 T-CGCGTTGCGATTTTCA-TT
*
92902 TCGTGTTGCGA
1 TCGCGTTGCGA
92913 AAGTAAACTA
Statistics
Matches: 85, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
14 11 0.13
16 4 0.05
18 11 0.13
19 33 0.39
20 23 0.27
21 3 0.04
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.42
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:92892 original size:20 final size:19
Alignment explanation
Indices: 92828--92912 Score: 91
Period size: 20 Copynumber: 4.4 Consensus size: 19
92818 GCGATTTTGT
*
92828 CGTTGCGAT-TTCATTTCG
1 CGTTGCGATAGTCATTTCG
**
92846 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
92865 CATTGCGATAGCCATTTCCG
1 CGTTGCGATAGTCATTT-CG
92885 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCA-TTTCG
*
92905 TGTTGCGA
1 CGTTGCGA
92913 AAGTAAACTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
18 9 0.16
19 22 0.39
20 23 0.40
21 3 0.05
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.40
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:93414 original size:18 final size:18
Alignment explanation
Indices: 93388--93432 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
93378 GTCGATCAGA
*
93388 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
93406 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
93424 TGATGGCTC
1 TGATGGCTC
93433 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:94480 original size:20 final size:20
Alignment explanation
Indices: 94455--94506 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
94445 ATTATGTATT
94455 ATCGCGTTGCGAAAGTCAGA
1 ATCGCGTTGCGAAAGTCAGA
*
94475 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTCAGA
*
94495 ATCTCGTTGCGA
1 ATCGCGTTGCGA
94507 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTCAGA
Found at i:94540 original size:20 final size:19
Alignment explanation
Indices: 94434--94548 Score: 77
Period size: 20 Copynumber: 5.7 Consensus size: 19
94424 CGCTTTGAAA
*
94434 ATCGCATTGCGATTATGTATT
1 ATCGCATTGCGA-TA-GTAGT
* * *
94455 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGT-AGT
* *
94475 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGT-AGT
* * * *
94495 ATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGA--TAGTAGT
94516 ATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATAGT-AGT
94536 ATCGCATTGCGAT
1 ATCGCATTGCGAT
94549 TTTCCCAATT
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
19 5 0.06
20 47 0.61
21 23 0.30
22 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (19 bp):
ATCGCATTGCGATAGTAGT
Found at i:94566 original size:21 final size:21
Alignment explanation
Indices: 94537--94629 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
94527 ATAGTAAGTA
94537 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
94558 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
94578 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
94599 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
94619 TCGCATTGCGA
1 TCGCATTGCGA
94630 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:94567 original size:41 final size:41
Alignment explanation
Indices: 94476--94610 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
94466 AAAGTCAGAA
* * * * ** *
94476 TCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
*
94516 ATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
94558 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
94599 TCGCGTTGCGAT
1 TCGCGTTGCGAT
94611 TTACTTATTC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:94611 original size:41 final size:41
Alignment explanation
Indices: 94537--94629 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
94527 ATAGTAAGTA
94537 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
94578 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
94619 TCGCATTGCGA
1 TCGCATTGCGA
94630 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:99224 original size:6 final size:6
Alignment explanation
Indices: 99213--99237 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
99203 CATCTAGACA
99213 CATACC CATACC CATACC CATACC C
1 CATACC CATACC CATACC CATACC C
99238 GAGTCCAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (6 bp):
CATACC
Done.