Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004295.1 Hibiscus syriacus cultivar Beakdansim tig00009426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63566

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3905--3944
15
2.7
14
84
7
53
30
2
30
37
1.71
4739--4788
18
2.8
18
78
0
55
32
48
2
18
1.59
5181--5215
7
5.0
7
100
0
70
14
28
14
42
1.84
5538--5595
15
3.8
15
90
2
89
36
15
17
31
1.91
7755--7855
51
2.0
51
94
0
175
47
15
7
28
1.74
8521--8646
60
2.1
59
81
7
148
33
21
15
30
1.94
10264--10512
122
2.0
122
82
3
295
28
18
20
32
1.96
14679--15050
43
8.6
43
72
5
225
25
22
16
35
1.95
14693--14913
86
2.6
86
83
0
264
27
22
16
33
1.95
17858--17905
12
3.8
13
91
2
55
60
6
0
33
1.22
17873--17905
3
11.0
3
100
0
66
66
0
0
33
0.92
18111--18135
3
8.3
3
100
0
50
68
32
0
0
0.90
18360--18393
14
2.4
14
85
0
50
38
32
8
20
1.84
21500--21543
21
2.1
21
100
0
88
36
4
29
29
1.77
23111--23145
2
17.5
2
100
0
70
48
0
0
51
1.00
26808--26844
18
2.0
19
89
5
58
29
0
0
70
0.88
28490--28579
2
45.0
2
100
0
180
50
0
0
50
1.00
35215--35247
2
16.5
2
100
0
66
48
0
0
51
1.00
42983--43017
17
2.1
16
89
5
52
62
14
2
20
1.43
45183--45226
20
2.3
19
84
7
54
25
22
11
40
1.87
45191--45234
20
2.2
20
95
0
79
25
22
9
43
1.82
54915--54940
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58222--58266
21
2.1
21
84
8
56
20
68
2
8
1.27

Tables:   1

The End!