genome.fa.s4296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004296.1 Hibiscus syriacus cultivar Beakdansim tig00009427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97412

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598--2638	14	2.9	14	86	10	57	31	7	26	34	1.84
2693--2719	4	6.8	4	100	0	54	25	0	0	74	0.83
2850--2878	3	9.7	3	100	0	58	0	0	31	68	0.89
8191--8244	22	2.5	22	79	8	65	22	0	3	74	0.98
9411--9454	21	2.2	19	84	8	52	18	9	0	72	1.10
12431--12611	94	1.9	95	82	5	224	33	16	18	30	1.94
13978--14181	36	5.9	36	73	13	187	29	19	10	40	1.84
14009--14071	21	3.3	20	70	25	64	28	20	4	46	1.71
14007--14343	99	3.3	100	88	3	487	29	19	10	40	1.84
14213--14281	36	1.9	36	84	0	93	28	17	13	40	1.87
14148--14497	167	2.1	166	85	2	477	30	19	9	40	1.84
14252--14421	65	2.6	66	87	0	234	29	20	10	40	1.85
14387--14455	34	2.0	34	85	0	93	26	20	13	40	1.88
14308--14490	101	1.8	103	81	7	232	30	20	8	40	1.82
14052--14557	266	1.9	265	79	5	574	30	19	10	39	1.85
14973--15071	50	2.0	50	95	0	180	25	36	17	21	1.94
16058--16100	23	1.9	22	90	4	68	30	2	4	62	1.28
16094--16136	21	2.1	21	91	4	70	16	4	0	79	0.90
16089--16145	27	2.1	27	83	6	71	19	5	0	75	0.99
22767--22833	34	1.9	35	82	8	84	52	2	1	43	1.25
23599--23714	60	1.9	60	82	3	144	36	13	10	39	1.79
24318--24364	18	2.6	19	78	18	55	40	6	0	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30954--31062	39	2.7	41	90	7	179	51	0	4	44	1.22
32674--32727	19	2.8	19	78	15	58	40	7	1	50	1.41
37707--37769	21	3.0	21	100	0	126	19	33	33	14	1.91
37773--37803	12	2.6	12	94	0	53	32	48	16	3	1.62
38523--38583	20	3.0	20	80	2	77	27	18	24	29	1.98
40085--40133	20	2.5	20	100	0	98	38	4	32	24	1.74
41650--41688	10	3.9	10	82	0	51	41	20	7	30	1.80
44313--44353	21	2.0	21	90	0	64	63	0	21	14	1.30
52058--52099	21	2.0	21	85	0	57	38	16	11	33	1.86
59477--59617	59	2.4	59	80	5	142	34	16	14	35	1.89
63586--63627	19	2.2	20	91	4	68	9	21	4	64	1.42
65448--65499	26	2.0	26	92	7	88	19	19	26	34	1.95
65574--65644	3	24.7	3	83	8	94	60	0	4	35	1.16
66612--66656	23	2.0	23	90	0	72	35	11	11	42	1.76
66618--66670	23	2.3	23	80	0	61	35	15	9	39	1.79
69680--69730	23	2.3	22	86	6	68	58	19	11	9	1.60
74065--74112	3	16.0	3	100	0	96	33	0	0	66	0.92
74330--74378	20	2.5	20	93	0	80	20	30	10	38	1.86
80981--81081	33	3.1	33	97	0	193	25	17	25	30	1.97
80991--81076	17	5.2	17	66	20	65	25	19	24	30	1.98
80981--81067	17	5.2	17	65	15	56	25	18	26	29	1.98
86122--86175	17	3.2	17	72	0	54	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87748--87818	21	3.5	21	79	14	85	16	33	26	22	1.96
88320--88417	34	2.9	34	89	0	142	55	4	4	36	1.38
88817--89435	128	4.9	128	93	3	1028	33	18	24	23	1.97
89506--89546	8	5.2	8	82	5	57	36	29	0	34	1.58
92520--92554	12	2.9	12	86	0	52	48	0	0	51	1.00
94267--94363	26	3.6	26	72	14	81	35	7	4	53	1.48
94377--94490	57	2.0	58	83	11	146	56	1	5	36	1.32
94395--94490	29	3.4	28	83	11	108	56	2	3	38	1.27
94784--94839	16	3.4	16	82	4	76	50	30	10	8	1.68
95463--95552	45	2.0	46	82	6	112	41	25	14	18	1.89
95540--95606	31	2.2	31	84	10	93	37	34	13	14	1.86
96726--96771	19	2.3	20	81	7	58	28	28	17	26	1.98
96806--96858	23	2.4	23	81	9	67	20	28	18	32	1.97
96849--96917	21	3.3	21	93	0	111	40	15	21	21	1.91
96908--97036	39	3.2	40	78	8	147	37	25	15	21	1.93
96912--97022	20	5.7	20	78	10	104	33	27	17	22	1.96
97209--97251	21	2.0	21	95	0	77	20	44	16	18	1.87

Tables:   1

The End!