Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004297.1 Hibiscus syriacus cultivar Beakdansim tig00009428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 83336
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Found at i:1216 original size:21 final size:21
Alignment explanation
Indices: 1173--1217 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1163 AATTAAGTGC
* * *
1173 TTATTAATTATAATTCCATAA
1 TTATAAATTATAATTACAAAA
*
1194 TTATAAATTATACTTACAAAA
1 TTATAAATTATAATTACAAAA
1215 TTA
1 TTA
1218 AGATAATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (21 bp):
TTATAAATTATAATTACAAAA
Found at i:1599 original size:15 final size:15
Alignment explanation
Indices: 1580--1622 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
1570 ATCCGCACCG
* *
1580 CATCCACCCGCCTCG
1 CATCCACCCGCCCCA
*
1595 TATCCACCCGCCCCA
1 CATCCACCCGCCCCA
1610 CATCCACCCGCCC
1 CATCCACCCGCCC
1623 AACTAAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.16, C:0.63, G:0.09, T:0.12
Consensus pattern (15 bp):
CATCCACCCGCCCCA
Found at i:2832 original size:20 final size:20
Alignment explanation
Indices: 2795--2846 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
2785 GACTATATTT
* *
2795 ATTTATAATTTGTATTCAAA
1 ATTTATTATTTATATTCAAA
* *
2815 ATTTATTATTTATTTTCATA
1 ATTTATTATTTATATTCAAA
2835 ATATTATT-TTTA
1 AT-TTATTATTTA
2847 AATTTTCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTATTATTTATATTCAAA
Found at i:7201 original size:17 final size:17
Alignment explanation
Indices: 7155--7203 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
7145 CATCATGCAT
7155 GAGAGAG-AGAGAGGGG
1 GAGAGAGAAGAGAGGGG
*
7171 G-GGGAGAGAGAGAGGGG
1 GAGAGAGA-AGAGAGGGG
*
7188 GAGAGAGAAAAGAGGG
1 GAGAGAGAAGAGAGGG
7204 TTTCTAGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 4 0.15
16 1 0.04
17 17 0.63
18 5 0.19
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (17 bp):
GAGAGAGAAGAGAGGGG
Found at i:11552 original size:18 final size:18
Alignment explanation
Indices: 11526--11565 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
11516 ACAAAATACA
*
11526 ACATTCCCTGGTAATCTT
1 ACATCCCCTGGTAATCTT
11544 ACATCCCCTGGTAATCTT
1 ACATCCCCTGGTAATCTT
11562 ACAT
1 ACAT
11566 TTCTACTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.35
Consensus pattern (18 bp):
ACATCCCCTGGTAATCTT
Found at i:12415 original size:225 final size:217
Alignment explanation
Indices: 12112--12573 Score: 685
Period size: 225 Copynumber: 2.1 Consensus size: 217
12102 GTGATATTCG
*
12112 GGTCGGGTCGAGTTCGGATTTAGGGTGAAAAATACCCGACCCGAAAATATATAATTTTACCTTAT
1 GGTCGGGTCGGGTTCGGATTTAGGGTGAAAAATACCCGACCCGAAAATATATAATTTTACCTTAT
* * *
12177 ATATTTAGGAATAATTACAACAATACCCTTCTATATATAATTTTTT-TCAATTAAGTCATTATTT
66 ATATTTAGGAATAATTACAACAATACCCCTCTATATAT-ATTTTTTCCCAATTAAGTCACTATTT
* * *
12241 TTATTGAATAAAAATAATTTTTTTATTATTTCGGGTC-GGTCGGATTTCTAATTCATATATTCGG
130 TTATTGAAT-AAAA-AATTTTTTTATTATTCCGAGTCAAGTCGGATTTCTAATTCATATATTCGG
*
12305 GTCGGGTCGGGTGAAACTTTATTTT
193 GTCGGGTCGGGTGAAACTTTATTTC
*
12330 GGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAATACCCGACCCGACCCAAAAAAATATATAATTTT
1 GGTCGGGTCGGGTTCGGATTTAGGGTGAAAAATACCCGACCCG-------AAAATATATAATTTT
* *
12395 ACCTTATATATTTAGGAATAATTACAATAATACCCCTCTCTATATATTTTTTCCCAATTAAGTCA
59 ACCTTATATATTTAGGAATAATTACAACAATACCCCTCTATATATATTTTTTCCCAATTAAGTCA
* * *
12460 CTGTTTTTATTTAATAAAAAATTTTTTTATTATTCCGAGTCAAGTCGGGTTTCTAATTCATATAT
124 CTATTTTTATTGAATAAAAAATTTTTTTATTATTCCGAGTCAAGTCGGATTTCTAATTCATATAT
12525 TCGGGTCGGGTCGGGTGAAACTTTATTTC
189 TCGGGTCGGGTCGGGTGAAACTTTATTTC
12554 GGTCGGGTCGGGTCTCGGAT
1 GGTCGGGTCGGGT-TCGGAT
12574 GGAGGTTTCC
Statistics
Matches: 219, Mismatches: 15, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
218 41 0.19
223 20 0.09
224 73 0.33
225 85 0.39
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (217 bp):
GGTCGGGTCGGGTTCGGATTTAGGGTGAAAAATACCCGACCCGAAAATATATAATTTTACCTTAT
ATATTTAGGAATAATTACAACAATACCCCTCTATATATATTTTTTCCCAATTAAGTCACTATTTT
TATTGAATAAAAAATTTTTTTATTATTCCGAGTCAAGTCGGATTTCTAATTCATATATTCGGGTC
GGGTCGGGTGAAACTTTATTTC
Found at i:29582 original size:24 final size:24
Alignment explanation
Indices: 29523--29583 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 24
29513 CATACATATA
29523 TATAATATTATATTATGTTATAAGT
1 TATAATA-TATATTATGTTATAAGT
29548 TATAACT-TATATTATGTTATAAGT
1 TATAA-TATATATTATGTTATAAGT
29572 TATAATATATAT
1 TATAATATATAT
29584 ATAGTTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
23 1 0.03
24 27 0.79
25 5 0.15
26 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.51
Consensus pattern (24 bp):
TATAATATATATTATGTTATAAGT
Found at i:31105 original size:12 final size:12
Alignment explanation
Indices: 31088--31120 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
31078 GTCTTCGCCG
31088 TGTTTTTATTCT
1 TGTTTTTATTCT
*
31100 TG-TTTTGTTCT
1 TGTTTTTATTCT
31111 TGTTTTTATT
1 TGTTTTTATT
31121 TTTATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.06, C:0.06, G:0.12, T:0.76
Consensus pattern (12 bp):
TGTTTTTATTCT
Found at i:31947 original size:20 final size:20
Alignment explanation
Indices: 31922--31965 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
31912 AAGGGAATGT
31922 GTCCTCTCGAGTTTAACTTA
1 GTCCTCTCGAGTTTAACTTA
31942 GTCCTCTCGAGTTTAACTTA
1 GTCCTCTCGAGTTTAACTTA
31962 GTCC
1 GTCC
31966 ACACAAGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (20 bp):
GTCCTCTCGAGTTTAACTTA
Found at i:41601 original size:13 final size:13
Alignment explanation
Indices: 41583--41625 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
41573 GGGAAAGAAG
41583 AACAAAAAAACAA
1 AACAAAAAAACAA
*
41596 AACAAAAGAACAAA
1 AACAAAAAAAC-AA
*
41610 AAAATAAAAAACAA
1 AACA-AAAAAACAA
41624 AA
1 AA
41626 AGAGAAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 10 0.40
14 9 0.36
15 6 0.24
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.02
Consensus pattern (13 bp):
AACAAAAAAACAA
Found at i:41634 original size:24 final size:22
Alignment explanation
Indices: 41576--41634 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 22
41566 CTAAGTTGGG
*
41576 AAAGAAGAACAAAAAAACAAAACA
1 AAAG-AGAA-AAAAAAAAAAAACA
41600 AAAGA-ACAAAAAAATAAAAAACAA
1 AAAGAGA-AAAAAAA-AAAAAAC-A
41624 AAAGAGAAAAA
1 AAAGAGAAAAA
41635 CGTTTAGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
22 7 0.23
23 8 0.27
24 14 0.47
25 1 0.03
ACGTcount: A:0.81, C:0.08, G:0.08, T:0.02
Consensus pattern (22 bp):
AAAGAGAAAAAAAAAAAAAACA
Found at i:41706 original size:8 final size:9
Alignment explanation
Indices: 41672--41705 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
41662 CCCTAAATTG
41672 AAAAA-AGA
1 AAAAAGAGA
41680 AAAAAGAGA
1 AAAAAGAGA
41689 AAAAAGAGA
1 AAAAAGAGA
41698 ACAAAAGA
1 A-AAAAGA
41706 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 5 0.21
9 13 0.54
10 6 0.25
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (9 bp):
AAAAAGAGA
Found at i:42499 original size:43 final size:43
Alignment explanation
Indices: 42451--42806 Score: 118
Period size: 43 Copynumber: 7.4 Consensus size: 43
42441 CAGAGTCAAT
42451 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
* *** ** * * *
42494 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCAGAGCCAAT
1 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAGACAA---C---G-CAAG
*
42549 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
* *** ** * * *
42592 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCAGAGCCAAT
1 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAGACAA---C---G-CAAG
42647 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
** * * ** * * *
42690 TTCAACTTCATGACGAAGGGACCACTGGTTTTCAATAAACAATTTCAGGGCCAAT
1 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAGACAA---C---G-CAAG
*
42745 TTCAACTTCGCAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
*
42788 TTCAACTTCACGACGAAGG
1 TTCAACTTCACAACGAAGG
42807 GACCGCTGGT
Statistics
Matches: 218, Mismatches: 59, Indels: 72
0.62 0.17 0.21
Matches are distributed among these distances:
43 73 0.33
44 12 0.06
45 10 0.05
46 6 0.03
47 2 0.01
48 15 0.07
50 15 0.07
51 2 0.01
52 6 0.03
53 10 0.05
54 12 0.06
55 55 0.25
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (43 bp):
TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
Found at i:42978 original size:98 final size:98
Alignment explanation
Indices: 42441--42970 Score: 943
Period size: 98 Copynumber: 5.4 Consensus size: 98
42431 AGGTTTTACC
*
42441 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
42506 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
66 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
*
42539 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
42604 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
66 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
*
42637 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
42702 ACGAAGGGACCACTGGTTTTCAATAAACAATTT
66 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
* *
42735 CAGGGCCAATTTCAACTTCGCAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
42800 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
66 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
* *
42833 CAGGGCCAATTTCAACTTCGCAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * *
42898 ACGAAGGGATCGTTGGTTGTCAGTAAACAATCT
66 ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
42931 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
42971 GAAACAACAC
Statistics
Matches: 415, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 415 1.00
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (98 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAATAAACAATTT
Found at i:44812 original size:12 final size:12
Alignment explanation
Indices: 44795--44827 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
44785 GTCTTCGCCG
44795 TGTTTTTATTCT
1 TGTTTTTATTCT
*
44807 TG-TTTTGTTCT
1 TGTTTTTATTCT
44818 TGTTTTTATT
1 TGTTTTTATT
44828 TTTATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.06, C:0.06, G:0.12, T:0.76
Consensus pattern (12 bp):
TGTTTTTATTCT
Found at i:46646 original size:31 final size:31
Alignment explanation
Indices: 46575--46650 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
46565 TAAAAGAATT
* *
46575 ATTAATATTTTATTTAAAATTTTAGGGTTCA
1 ATTAATATTTTATTTAAAATTTAAGGATTCA
**
46606 ATTGGTATTTTATTTAAAATTTAAGGATT-A
1 ATTAATATTTTATTTAAAATTTAAGGATTCA
46636 GATTAATATTTTATT
1 -ATTAATATTTTATT
46651 CAGAGTCGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.53
Consensus pattern (31 bp):
ATTAATATTTTATTTAAAATTTAAGGATTCA
Found at i:48129 original size:2 final size:2
Alignment explanation
Indices: 48122--48160 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
48112 ATGCACATTG
48122 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48161 AATAAATATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:48169 original size:12 final size:12
Alignment explanation
Indices: 48126--48174 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
48116 ACATTGATAT
*
48126 ATATATATATAT
1 ATATATATATAA
*
48138 ATATATATATAT
1 ATATATATATAA
48150 ATATATATATAA
1 ATATATATATAA
* *
48162 ATAAATATCTAA
1 ATATATATATAA
48174 A
1 A
48175 AAGGCTCCGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAA
Found at i:57737 original size:18 final size:19
Alignment explanation
Indices: 57688--57737 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
57678 CAATTATTTT
57688 ATATATTTAA-TATTAATGA
1 ATATATTTAATTATTAA-GA
*
57707 AAATATTAGTAATTATTAA-A
1 ATATATT--TAATTATTAAGA
57727 ATATATTTAAT
1 ATATATTTAAT
57738 AATACTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
18 4 0.15
19 6 0.23
20 7 0.27
21 3 0.12
22 6 0.23
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (19 bp):
ATATATTTAATTATTAAGA
Found at i:65765 original size:31 final size:31
Alignment explanation
Indices: 65730--65790 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
65720 AGATACGGTA
65730 ATTGCCTTGGAAAGCTGATGCCAAACTCATC
1 ATTGCCTTGGAAAGCTGATGCCAAACTCATC
65761 ATTGCCTTGGAAAGCTGATGCCAAACTCAT
1 ATTGCCTTGGAAAGCTGATGCCAAACTCAT
65791 AGTATGGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (31 bp):
ATTGCCTTGGAAAGCTGATGCCAAACTCATC
Found at i:68538 original size:219 final size:219
Alignment explanation
Indices: 68159--68583 Score: 841
Period size: 219 Copynumber: 1.9 Consensus size: 219
68149 ACTTTTAATG
68159 TGTTATGTTTTTTCAGACTTCAGGGTGCTTACTGCCAATATCACAAATCGGTAGGCACGACATTG
1 TGTTATGTTTTTTCAGACTTCAGGGTGCTTACTGCCAATATCACAAATCGGTAGGCACGACATTG
68224 CTTTTATCTTTGTCTCGTTTTACCAACCACACTGGAGTAGGATGTAATTCATCCCTAGATAACTC
66 CTTTTATCTTTGTCTCGTTTTACCAACCACACTGGAGTAGGATGTAATTCATCCCTAGATAACTC
68289 TTTTCTGTTATGTAATGTAGAAAGCATCAGAAGAATATTCTACTAAGCTAACTGAGTTAATGGGA
131 TTTTCTGTTATGTAATGTAGAAAGCATCAGAAGAATATTCTACTAAGCTAACTGAGTTAATGGGA
68354 GGGTAGGTAATGTTACTGAGTTAA
196 GGGTAGGTAATGTTACTGAGTTAA
68378 TGTTATGTTTTTTCAGACTTCAGGGTGCTTACTGCCAATATCACAAATCGGTAGGCACGACATTG
1 TGTTATGTTTTTTCAGACTTCAGGGTGCTTACTGCCAATATCACAAATCGGTAGGCACGACATTG
68443 CTTTTATCTTTGTCTCGTTTTACCAACCACACTGGAGTAGGATGTAATTCATCCCTAGATAACTC
66 CTTTTATCTTTGTCTCGTTTTACCAACCACACTGGAGTAGGATGTAATTCATCCCTAGATAACTC
*
68508 TTTTCTGTTATGTAATGTAGAAAGCATCAGAAGAATATTGTACTAAGCTAACTGAGTTAATGGGA
131 TTTTCTGTTATGTAATGTAGAAAGCATCAGAAGAATATTCTACTAAGCTAACTGAGTTAATGGGA
68573 GGGTAGGTAAT
196 GGGTAGGTAAT
68584 CAATGATCCT
Statistics
Matches: 205, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 205 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (219 bp):
TGTTATGTTTTTTCAGACTTCAGGGTGCTTACTGCCAATATCACAAATCGGTAGGCACGACATTG
CTTTTATCTTTGTCTCGTTTTACCAACCACACTGGAGTAGGATGTAATTCATCCCTAGATAACTC
TTTTCTGTTATGTAATGTAGAAAGCATCAGAAGAATATTCTACTAAGCTAACTGAGTTAATGGGA
GGGTAGGTAATGTTACTGAGTTAA
Done.