genome.fa.s4298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004298.1 Hibiscus syriacus cultivar Beakdansim tig00009429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138021

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3641--4009	54	6.9	54	85	4	507	24	18	20	36	1.94
7595--8169	55	10.4	55	88	2	776	37	10	17	34	1.84
7722--7813	28	3.3	28	64	3	69	40	11	16	31	1.85
7595--8152	111	5.0	111	89	1	820	38	11	16	33	1.84
7733--7981	28	9.0	28	60	7	78	40	10	15	33	1.81
10765--10828	33	1.9	33	100	0	128	43	7	37	10	1.69
11457--11640	95	1.9	95	82	3	228	33	15	23	26	1.95
12085--12372	79	3.6	77	84	7	355	35	12	22	29	1.91
12624--12822	110	1.8	110	81	6	251	41	9	21	27	1.84
12832--12885	24	2.2	24	86	6	72	46	0	18	35	1.50
15779--16558	54	14.4	54	85	4	873	26	17	20	35	1.95
15832--16558	108	6.7	108	89	3	1027	26	17	20	35	1.95
15779--16558	162	4.8	162	87	3	1063	26	17	20	35	1.95
18180--18221	19	2.4	18	84	11	52	47	19	11	21	1.81
18180--18229	16	2.9	16	78	16	55	44	20	12	24	1.85
18686--18725	20	2.0	20	85	4	55	37	17	15	30	1.90
27701--27785	30	2.9	29	75	10	82	34	15	5	44	1.70
29493--29548	22	2.7	21	81	8	69	32	17	25	25	1.97
29998--30365	79	4.7	79	87	2	483	35	11	23	29	1.90
30675--30733	29	2.0	29	93	0	100	44	5	23	27	1.74
30818--30876	20	2.6	22	76	20	59	45	0	18	35	1.50
33779--34288	54	9.4	54	87	2	657	27	18	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34746--35524	54	14.5	53	87	3	986	26	17	20	36	1.94
33330--35264	967	2.0	967	98	0	3717	31	17	16	34	1.92
37128--37158	16	1.9	16	93	0	53	38	22	12	25	1.90
39763--39805	21	2.0	21	100	0	86	58	18	4	18	1.56
48212--48753	79	6.9	79	89	2	820	37	11	22	28	1.89
48216--48753	158	3.4	158	93	1	907	37	11	22	28	1.89
49051--49109	29	2.0	29	93	0	100	45	3	23	27	1.68
52119--52229	45	2.5	45	77	5	109	35	21	7	36	1.81
52352--52397	18	2.8	16	81	12	56	43	21	8	26	1.81
53391--53438	18	2.7	18	93	0	78	12	22	6	58	1.57
55999--56076	38	2.1	38	100	0	156	37	15	12	34	1.86
62618--62691	31	2.4	31	95	0	139	31	33	14	20	1.93
68965--69076	37	3.0	37	93	0	188	36	9	11	41	1.75
72883--73248	139	2.6	139	91	0	583	24	19	17	38	1.93
74437--74631	52	3.8	53	78	4	200	41	17	10	30	1.83
74695--74873	74	2.4	75	83	6	211	40	7	18	32	1.79
74846--74935	36	2.5	36	87	0	126	42	15	20	22	1.89
75108--75281	37	4.9	37	72	10	148	41	10	17	29	1.83
79132--79167	12	3.0	12	91	0	63	44	16	22	16	1.86
93196--93335	36	3.9	35	85	6	183	20	24	19	36	1.95
95962--95999	7	5.4	7	87	12	60	52	31	0	15	1.43
97703--97727	13	1.9	13	100	0	50	24	0	36	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98288--98348	33	1.9	32	83	9	81	31	14	13	40	1.84
98435--98501	34	2.0	33	88	2	98	23	8	16	50	1.73
99050--99172	50	2.4	49	78	5	138	15	34	27	21	1.94
102995--103056	6	11.3	6	72	19	55	14	33	19	32	1.92
102995--103056	21	3.0	21	85	0	88	14	33	19	32	1.92
102999--103054	15	3.7	15	82	0	76	14	35	17	32	1.90
103397--103452	18	3.1	18	97	0	103	26	21	23	28	1.99
104963--105184	111	2.0	111	93	1	383	45	10	8	36	1.69
105308--105337	10	3.0	10	95	0	51	36	0	30	33	1.58
105457--105576	50	2.4	49	76	5	123	24	30	32	13	1.93
121010--121038	3	9.7	3	100	0	58	31	0	0	68	0.89
123327--123382	25	2.4	24	82	8	62	44	1	3	50	1.29
123944--123972	3	9.7	3	100	0	58	68	31	0	0	0.89
135620--135686	19	3.3	19	75	20	57	56	1	0	41	1.08

Tables:   1

The End!