Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004299.1 Hibiscus syriacus cultivar Beakdansim tig00009430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57054

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11065--11100
15
2.4
15
95
0
63
50
27
2
19
1.62
12873--12911
19
2.1
19
85
9
53
25
5
7
61
1.44
14251--14275
13
1.9
13
100
0
50
36
16
0
48
1.46
14357--14456
50
2.0
51
94
2
175
30
15
23
32
1.95
16273--16319
3
15.3
3
95
4
85
34
0
0
65
0.93
17590--17643
2
27.0
2
96
0
99
48
0
0
51
1.00
18005--18187
76
2.4
76
89
1
269
30
12
18
39
1.87
18136--18246
58
1.9
58
94
0
195
28
10
20
39
1.86
18305--18782
76
6.3
76
83
1
510
30
11
17
40
1.85
18985--19156
69
2.5
69
80
3
177
31
18
25
25
1.98
19981--20716
76
9.6
76
85
2
843
29
11
17
40
1.86
20286--20348
25
2.5
26
77
12
69
28
15
15
39
1.89
20514--20623
26
4.3
26
66
19
79
31
15
11
40
1.83
20889--21122
69
3.4
68
76
8
224
29
18
26
25
1.98
20867--21132
69
3.9
68
76
8
200
28
19
26
25
1.98
23284--23337
24
2.2
25
83
9
67
46
18
5
29
1.72
24629--24690
26
2.4
26
91
0
97
27
20
12
38
1.90
49277--49315
19
2.1
19
85
9
53
25
5
7
61
1.44
50664--50691
13
2.2
13
100
0
56
35
14
7
42
1.73
50771--50873
50
2.0
51
96
1
190
31
13
21
33
1.92
52633--52702
3
23.3
3
88
5
97
40
0
0
60
0.97
54481--54663
76
2.4
76
88
1
260
31
12
16
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54612--54780
58
2.9
58
97
0
311
28
11
19
40
1.87
54839--55316
76
6.3
76
83
3
496
30
11
16
41
1.85
54993--55041
25
1.9
26
91
4
82
30
6
18
44
1.74
55144--55241
25
3.8
26
73
14
71
34
15
11
38
1.83
55519--55752
69
3.4
69
78
4
215
30
18
26
23
1.98

Tables:   1

The End!