Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000043.1 Hibiscus syriacus cultivar Beakdansim tig00000067_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70261

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2108--2140
17
1.9
17
88
11
50
18
6
3
72
1.18
2725--2791
20
3.0
22
75
22
68
73
0
5
20
1.04
4040--4088
19
2.6
19
76
0
53
69
0
2
28
1.00
4076--4115
19
2.2
18
86
4
53
60
2
2
35
1.24
4097--4405
38
8.5
38
72
16
158
46
7
4
41
1.52
4226--4405
74
2.4
72
81
7
209
46
7
3
42
1.49
4210--4443
38
6.1
38
78
8
156
44
6
4
44
1.50
4265--4443
74
2.4
74
83
4
207
44
6
4
44
1.50
6770--6879
23
4.7
24
78
7
104
47
1
28
22
1.62
6783--6879
46
2.1
45
84
5
124
49
2
26
21
1.60
7699--7792
40
2.3
40
94
0
161
41
4
24
29
1.74
7699--7792
20
4.7
20
87
0
134
41
4
24
29
1.74
7720--7802
20
4.3
19
89
3
96
42
7
24
26
1.80
7951--8020
37
1.9
37
88
2
106
51
2
0
45
1.16
11528--11566
16
2.4
16
100
0
78
28
33
17
20
1.96
12930--12984
2
27.5
2
96
0
101
49
1
0
49
1.11
13045--13070
2
13.0
2
100
0
52
50
0
0
50
1.00
19037--19093
20
2.8
20
89
0
87
36
8
28
26
1.86
28993--29055
22
2.9
22
75
0
72
30
7
20
41
1.81
32594--32641
18
2.7
18
93
3
80
35
6
25
33
1.81
33000--33600
261
2.4
247
86
8
815
41
19
11
27
1.86
47091--48020
465
2.0
465
99
0
1851
23
18
21
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63982--64010
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!