Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000430.1 Hibiscus syriacus cultivar Beakdansim tig00000789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57434
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:9736 original size:3 final size:3
Alignment explanation
Indices: 9715--9802 Score: 76
Period size: 3 Copynumber: 29.7 Consensus size: 3
9705 TAATATTGTT
* * * *
9715 TAA TAA TAT TAA TAT TAA TAA TATA TAA TATA TAA TAA TAG TAG T-A
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA
*
9761 TAA T-A TAA TTA TATA TAA TAA T-A TAA TAA T-A TAA TAA TAA TA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9803 GACTGGACGA
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
2 7 0.10
3 54 0.77
4 9 0.13
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:9766 original size:26 final size:26
Alignment explanation
Indices: 9717--9802 Score: 88
Period size: 26 Copynumber: 3.2 Consensus size: 26
9707 ATATTGTTTA
*
9717 ATAATATTAATATTAATAATATATAATAT
1 ATAATAATAATA-TAAT-A-ATATAATAT
*
9746 ATAATAATAGTAGT-ATAATATAAT-T
1 ATAATAATAATA-TAATAATATAATAT
9771 ATATATAATAATATAATAATATAATA-
1 ATA-ATAATAATATAATAATATAATAT
9797 ATAATA
1 ATAATA
9803 GACTGGACGA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
25 8 0.16
26 28 0.56
27 1 0.02
28 2 0.04
29 11 0.22
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
ATAATAATAATATAATAATATAATAT
Found at i:9797 original size:29 final size:30
Alignment explanation
Indices: 9715--9802 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 30
9705 TAATATTGTT
* *
9715 TAATAATATTAATATTAATAATATATAATATA
1 TAATAATAGTAATAAT-ATAATA-ATAATATA
9747 TAATAATAGTAGTATAATATAAT--T-ATATA
1 TAATAATAGTA--ATAATATAATAATAATATA
9776 TAATAATA-TAATAATATAATAATAATA
1 TAATAATAGTAATAATATAATAATAATA
9803 GACTGGACGA
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
26 10 0.20
28 3 0.06
29 16 0.33
30 1 0.02
32 10 0.20
33 5 0.10
34 4 0.08
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (30 bp):
TAATAATAGTAATAATATAATAATAATATA
Found at i:10110 original size:20 final size:20
Alignment explanation
Indices: 10057--10110 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
10047 AAAACATCCT
* * *
10057 ACCCTGAGGTTTTACAGATG
1 ACCCGGAGGTTTTACAAATC
*
10077 ACCCGAAGGTTTTACAAATC
1 ACCCGGAGGTTTTACAAATC
*
10097 ACCCGGAGGATTTA
1 ACCCGGAGGTTTTA
10111 ATTTTTTAGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (20 bp):
ACCCGGAGGTTTTACAAATC
Found at i:10176 original size:120 final size:119
Alignment explanation
Indices: 9932--10216 Score: 434
Period size: 120 Copynumber: 2.4 Consensus size: 119
9922 CAAAAATAGG
*
9932 AAACATCCT-CCCTGAGGTTTTACAGATGACCCAAAGG--TTACAAATCACCTGGAGGATTTAAT
1 AAACATCCTACCCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATCACCCGGAGGATTTAAT
* * *
9994 TTTCTAGAACATTAACTGAGAAACTTTGAAAATCGCTGTCTCATTTTCATACGA
66 TTTCTAGAACATAAAATGAGAAACTTTGAAAATCGATGTCTCATTTTCATACGA
*
10048 AAACATCCTACCCTGAGGTTTTACAGATGACCCGAAGGTTTTACAAATCACCCGGAGGATTTAAT
1 AAACATCCTACCCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATCACCCGGAGGATTTAAT
* * * *
10113 TTTTTAGATAACATAAAATGAGTAACTTT-AAAATCGATTTCTCATTTTCATGCGA
66 TTTCTAG--AACATAAAATGAGAAACTTTGAAAATCGATGTCTCATTTTCATACGA
*
10168 AAATATCCTACCCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATC
1 AAACATCCTACCCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATC
10217 CATGGAAATA
Statistics
Matches: 153, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
116 9 0.06
117 27 0.18
119 30 0.20
120 70 0.46
121 17 0.11
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (119 bp):
AAACATCCTACCCTGAGGTTTTACAGATGACCCAAAGGTTTTACAAATCACCCGGAGGATTTAAT
TTTCTAGAACATAAAATGAGAAACTTTGAAAATCGATGTCTCATTTTCATACGA
Found at i:18828 original size:3 final size:3
Alignment explanation
Indices: 18822--18912 Score: 66
Period size: 3 Copynumber: 31.0 Consensus size: 3
18812 TAATATTATT
* *
18822 TAA TAA TAT TAA TAA TAA -AA T-A TAA TAA T-A TCA TATA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * *
18865 TAG TAG T-A TAA TATA TAA TTA TATA TAA TAA TAA T-A TAA TAA AAA
1 TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
18910 TAA
1 TAA
18913 GACTGGACGA
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
2 9 0.13
3 53 0.75
4 9 0.13
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:18863 original size:34 final size:31
Alignment explanation
Indices: 18824--18900 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 31
18814 ATATTATTTA
*
18824 ATAATATTAATAATAAAATATAATAATATCATAT
1 ATAATAATAATAATAAAATAT-ATAAT-T-ATAT
* * *
18858 ATAATAATAGTAGTATAATATATAATTATAT
1 ATAATAATAATAATAAAATATATAATTATAT
18889 ATAATAATAATA
1 ATAATAATAATA
18901 TAATAAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 15 0.39
32 1 0.03
33 5 0.13
34 17 0.45
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (31 bp):
ATAATAATAATAATAAAATATATAATTATAT
Found at i:18880 original size:21 final size:20
Alignment explanation
Indices: 18812--18906 Score: 76
Period size: 21 Copynumber: 4.8 Consensus size: 20
18802 TTAGGCTTTG
* *
18812 TAATATTATTTAATAATAT-
1 TAATAATATATAATAATATA
18831 TAATAATA-A-AAT-ATA-A
1 TAATAATATATAATAATATA
18847 TAATATCATATATAATAATAGTA
1 TAATA--ATATATAATAATA-TA
*
18870 GT-ATAATATATAATTATATA
1 -TAATAATATATAATAATATA
18890 TAATAATAATATAATAA
1 TAATAAT-ATATAATAA
18907 AAATAAGACT
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
16 8 0.13
17 3 0.05
18 3 0.05
19 9 0.15
20 10 0.16
21 23 0.38
23 4 0.07
24 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (20 bp):
TAATAATATATAATAATATA
Found at i:19249 original size:119 final size:119
Alignment explanation
Indices: 19038--19310 Score: 483
Period size: 119 Copynumber: 2.3 Consensus size: 119
19028 ATCAAAAATA
* * *
19038 AAAAACATCATACCCTGAGGTTTTACAGATGACCTAGAAGTTTTACAAATCACCCGGAGGATTTA
1 AAAAACATCCTACCCTGAGGTTTTACAAATGACCCAGAAGTTTTACAAATCACCCGGAGGATTTA
19103 ATTTTCCAAAACATTAAATGAGAAAATTTGAAAATTGTTTTCTCATTTTCATGC
66 ATTTTCCAAAACATTAAATGAGAAAATTTGAAAATTGTTTTCTCATTTTCATGC
* *
19157 AAAAACATCCTACCTTGAGGTTTTACAAATGACCCAGAAGTTTTACAAATCACCTGGAGGATTTA
1 AAAAACATCCTACCCTGAGGTTTTACAAATGACCCAGAAGTTTTACAAATCACCCGGAGGATTTA
*
19222 ATTTTCTAAAACATTAAATGAGAAAATTTGAAAATTGTTTTCTCATTTTCATGC
66 ATTTTCCAAAACATTAAATGAGAAAATTTGAAAATTGTTTTCTCATTTTCATGC
*
19276 AAAAACATCCTACCCTGAGGTTTTACAAATCACCC
1 AAAAACATCCTACCCTGAGGTTTTACAAATGACCC
19311 GGAGGATTTA
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 146 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.32
Consensus pattern (119 bp):
AAAAACATCCTACCCTGAGGTTTTACAAATGACCCAGAAGTTTTACAAATCACCCGGAGGATTTA
ATTTTCCAAAACATTAAATGAGAAAATTTGAAAATTGTTTTCTCATTTTCATGC
Found at i:19367 original size:99 final size:99
Alignment explanation
Indices: 19196--19419 Score: 322
Period size: 99 Copynumber: 2.3 Consensus size: 99
19186 TGACCCAGAA
* * ***
19196 GTTTTACAAATCACCTGGAGGATTTAATTTTCTAAAACATTAAATGAGAAAATTTGAAAATTGTT
1 GTTTTACAAATCACCCGGAGGATTTAATTTTCTAAAACATTAAATGAGAAAATTTAAAAATCCCT
*
19261 TTCTCATTTTCATGCAAAAACATCCTACCCTGAG
66 TTCTCATTTTCATGCAAAAACATCCTACCATGAG
* *
19295 GTTTTACAAATCACCCGGAGGATTTAATTTTCTAGAACATTAAATGAGAAACTTTAAAAATCCCT
1 GTTTTACAAATCACCCGGAGGATTTAATTTTCTAAAACATTAAATGAGAAAATTTAAAAATCCCT
**
19360 TTCTCATTTTCATGTGAAAACATCCTACCATGAG
66 TTCTCATTTTCATGCAAAAACATCCTACCATGAG
* * * *
19394 GTTTTACAGATGACTCGGAGGTTTTA
1 GTTTTACAAATCACCCGGAGGATTTA
19420 CAAATCTGTG
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 111 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (99 bp):
GTTTTACAAATCACCCGGAGGATTTAATTTTCTAAAACATTAAATGAGAAAATTTAAAAATCCCT
TTCTCATTTTCATGCAAAAACATCCTACCATGAG
Found at i:28057 original size:3 final size:3
Alignment explanation
Indices: 28051--28122 Score: 51
Period size: 3 Copynumber: 24.0 Consensus size: 3
28041 TAATATTATT
* * * *
28051 TAA TAA TAT TAA TAA TAA T-A TAT TAA T-A TATA TAA TAA TAG TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
*
28095 T-A TAA TATA TAA TTA TATA TAA TAA TAA
1 TAA TAA TA-A TAA TAA TA-A TAA TAA TAA
28123 GACCGGACGA
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
2 5 0.09
3 41 0.75
4 9 0.16
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:28060 original size:10 final size:10
Alignment explanation
Indices: 28041--28121 Score: 76
Period size: 10 Copynumber: 7.8 Consensus size: 10
28031 TTGGGCTTTG
* *
28041 TAATATTATT
1 TAATAATATA
28051 TAATAATATTAA
1 TAATAATA-T-A
28063 TAATAATATA
1 TAATAATATA
28073 TTAAT-ATATA
1 -TAATAATATA
28083 TAATAATAGTA
1 TAATAATA-TA
28094 GT-ATAATATA
1 -TAATAATATA
*
28104 TAATTATATA
1 TAATAATATA
28114 TAATAATA
1 TAATAATA
28122 AGACCGGACG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
9 5 0.08
10 32 0.53
11 14 0.23
12 9 0.15
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (10 bp):
TAATAATATA
Found at i:28122 original size:23 final size:23
Alignment explanation
Indices: 28051--28122 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
28041 TAATATTATT
* *
28051 TAATAATAT-TAATAATAATATAT
1 TAATAATATATAATTAT-ATATAA
*
28074 TAAT-ATATATAA-TA-ATAGTAG
1 TAATAATATATAATTATATA-TAA
28095 T-ATAATATATAATTATATATAA
1 TAATAATATATAATTATATATAA
28117 TAATAA
1 TAATAA
28123 GACCGGACGA
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.12
21 11 0.28
22 10 0.25
23 14 0.35
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (23 bp):
TAATAATATATAATTATATATAA
Found at i:30572 original size:21 final size:22
Alignment explanation
Indices: 30546--30597 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
30536 AAGTTCCCCC
30546 GTATCGATACCT-TCTACATA-G
1 GTATCGATACCTCT-TACATAGG
*
30567 GTATCGATACCTCTTCCATAGG
1 GTATCGATACCTCTTACATAGG
30589 GTATCGATA
1 GTATCGATA
30598 TTGTTCATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (22 bp):
GTATCGATACCTCTTACATAGG
Found at i:32438 original size:222 final size:218
Alignment explanation
Indices: 31981--32423 Score: 502
Period size: 222 Copynumber: 2.0 Consensus size: 218
31971 TCTTAGGCAT
*
31981 ACTGGAAACATTATCAAGCAAAATAACAAATTAGGTAGCGCTTATATAACGTAATAGGTAGCATC
1 ACTGGAAACATTATCAAGCAAAATAACAAATTAGGTAACGCTTATATAACGTAATAGGTAGCATC
* * * * *
32046 TTTTTAAGATGACGGGGCTTTGGAAATCCAACGATAACAAAATAGGTTAATTACTTATTTTGTTA
66 TATTAAAGATGACGGGGCCTTAGAAATCCAACGATAACAAAATAGGTTAATTACTTAATTTGTTA
** * * * *
32111 TTACAACATATTAGGTAATGCCTAAAATGTTACCAAAGTTTAAGCTGATAGACCTTTATAAATCC
131 TTACAACATATTACCTAAGGCATAAAATGTTAACAAAATTTAAGCTGATAGACCTTTATAAATCC
* * *
32176 GACGATAACATAATCGGTTAATT
196 CACGATAACATAACCGGTTAATC
* * * * *
32199 ACTGGAAACATTATCAAGTATAATAACATATTAGGTAACGCTTATGTAACGTAATAGGTTGCGCA
1 ACTGGAAACATTATCAAGCAAAATAACAAATTAGGTAACGCTTATATAACGTAATAGG-T-AGCA
* * *
32264 T-TATTAAAGTTGATGGGGCCTTAGAAATCCGTA-GATAACAAAATAGGTTAATTACTTAATTTG
64 TCTATTAAAGATGACGGGGCCTTAGAAATCC-AACGATAACAAAATAGGTTAATTACTTAATTTG
* * * *
32327 TTATCAGTATTATCA-ACTTACCTTAGGCAT-AAATGTTAACAAAATTTAAGCTGATGGAGCC-T
128 TTAT---TA-CAACATA-TTACCTAAGGCATAAAATGTTAACAAAATTTAAGCTGATAGA-CCTT
*
32389 TA-AGAATCCCACGATAACATTACCGGTTAATC
187 TATA-AATCCCACGATAACATAACCGGTTAATC
32421 ACT
1 ACT
32424 TGATTTGTTA
Statistics
Matches: 187, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
218 53 0.28
219 57 0.30
220 5 0.03
221 1 0.01
222 58 0.31
223 13 0.07
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (218 bp):
ACTGGAAACATTATCAAGCAAAATAACAAATTAGGTAACGCTTATATAACGTAATAGGTAGCATC
TATTAAAGATGACGGGGCCTTAGAAATCCAACGATAACAAAATAGGTTAATTACTTAATTTGTTA
TTACAACATATTACCTAAGGCATAAAATGTTAACAAAATTTAAGCTGATAGACCTTTATAAATCC
CACGATAACATAACCGGTTAATC
Found at i:34772 original size:22 final size:22
Alignment explanation
Indices: 34721--34766 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 22
34711 TTTTTAGAAT
*
34721 CATACTACACAAAAGGTATCGCTA
1 CATA-TAC-CAAAAGGTATCGATA
34745 CATATACCAAAA-GTATCGATA
1 CATATACCAAAAGGTATCGATA
34766 C
1 C
34767 TTTATATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 5 0.24
23 3 0.14
24 4 0.19
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (22 bp):
CATATACCAAAAGGTATCGATA
Found at i:36943 original size:18 final size:18
Alignment explanation
Indices: 36920--36958 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
36910 GCCAAAATTT
36920 AAATTGAAATTGAAACTC
1 AAATTGAAATTGAAACTC
* *
36938 AAATTGAAATTTAAATTC
1 AAATTGAAATTGAAACTC
36956 AAA
1 AAA
36959 CTCCAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTGAAATTGAAACTC
Found at i:36947 original size:24 final size:24
Alignment explanation
Indices: 36914--36977 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
36904 AGAGGAGCCA
* *
36914 AAATTTAAATTGAAATTGAAACTC
1 AAATTAAAATTGAAATTCAAACTC
* *
36938 AAATTGAAATTTAAATTCAAACTC
1 AAATTAAAATTGAAATTCAAACTC
* *
36962 CAATTAAAAATGAAAT
1 AAATTAAAATTGAAAT
36978 GAACATGAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.31
Consensus pattern (24 bp):
AAATTAAAATTGAAATTCAAACTC
Found at i:39897 original size:21 final size:22
Alignment explanation
Indices: 39862--39903 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
39852 AACACGCATA
39862 ATTTAAAAAATGTATCGATACT
1 ATTTAAAAAATGTATCGATACT
*
39884 ATTTAAAAAA-GTATTGATAC
1 ATTTAAAAAATGTATCGATAC
39904 ATTATGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.36
Consensus pattern (22 bp):
ATTTAAAAAATGTATCGATACT
Found at i:40010 original size:21 final size:21
Alignment explanation
Indices: 39986--40029 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
39976 ATAATAATCT
*
39986 ATTTTGATGTTTTAAGGATCG
1 ATTTAGATGTTTTAAGGATCG
*
40007 ATTTAGATGTTTTAAGTATCG
1 ATTTAGATGTTTTAAGGATCG
40028 AT
1 AT
40030 ACTTCTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.05, G:0.20, T:0.48
Consensus pattern (21 bp):
ATTTAGATGTTTTAAGGATCG
Found at i:40415 original size:200 final size:200
Alignment explanation
Indices: 40012--40525 Score: 816
Period size: 200 Copynumber: 2.6 Consensus size: 200
40002 GATCGATTTA
*
40012 GATGTTTTAAGTATCGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGA
1 GATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGA
*
40077 TTCATAATGGACAAAAAGTATCGATACAAATTAAAAAAAGTATCGATACATTTTGCTTACCTCTT
66 TTCATAATGGACAAAAAGTATCGATACAAATT-AAAAAAGTATCGATACATTTTGCTTACCTATT
* * *
40142 CTCTTGTTAAACCGGTATATTTTTATCAGTTACATTGTAAATTTACCTATTACATTATAATAATC
130 ATCTCGTTAAACCGGTATATTTTTATCAGTTACATTGAAAATTTACCTATTACATTATAATAATC
*
40207 GGTTTC
195 AGTTTC
* *
40213 GATGTTTTAAGGATTGATGCTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGA
1 GATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGA
* * * *
40278 TTCATACTGGACAAAAGGTATCGATACATATTAAAAAAGTATCGATACTTTTTGCTTACCTATTA
66 TTCATAATGGACAAAAAGTATCGATACAAATTAAAAAAGTATCGATACATTTTGCTTACCTATTA
*
40343 TCTCGTTAAACCGGTATATTTTTA-CTAGTTACATTGAAAATTTACCTATTACGTTATAATAATC
131 TCTCGTTAAACCGGTATATTTTTATC-AGTTACATTGAAAATTTACCTATTACATTATAATAATC
40407 AGTTTC
195 AGTTTC
* * * **
40413 GATGTTTTAAGGATCGATACTTCTTATACATGTATCGATACTTTTTGAGTGCATCTCGTTCAGGA
1 GATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGA
* *
40478 TTCATATTGTACAAAAAGTATCGATACAAATTAAAAAA-TATCGATACA
66 TTCATAATGGACAAAAAGTATCGATACAAATTAAAAAAGTATCGATACA
40526 AATTAAAAAA
Statistics
Matches: 287, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
199 10 0.03
200 186 0.65
201 91 0.32
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (200 bp):
GATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGA
TTCATAATGGACAAAAAGTATCGATACAAATTAAAAAAGTATCGATACATTTTGCTTACCTATTA
TCTCGTTAAACCGGTATATTTTTATCAGTTACATTGAAAATTTACCTATTACATTATAATAATCA
GTTTC
Found at i:40545 original size:22 final size:21
Alignment explanation
Indices: 40490--40546 Score: 89
Period size: 20 Copynumber: 2.7 Consensus size: 21
40480 CATATTGTAC
40490 AAAAAGTATCGATACAAATTA
1 AAAAAGTATCGATACAAATTA
40511 AAAAA-TATCGATACAAATTAA
1 AAAAAGTATCGATACAAATT-A
*
40532 AAAAAGTATAGATAC
1 AAAAAGTATCGATAC
40547 TTTTTGCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 14 0.42
21 11 0.33
22 8 0.24
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.23
Consensus pattern (21 bp):
AAAAAGTATCGATACAAATTA
Found at i:40703 original size:222 final size:218
Alignment explanation
Indices: 40296--40945 Score: 856
Period size: 199 Copynumber: 3.0 Consensus size: 218
40286 GGACAAAAGG
* * * **
40296 TATCGATACATATTAAAAAAGTATCGATACTTTTTGCTTACCTATTATCTCGTTAAACCGGTATA
1 TATCGATACA-ATTAAAAAAGTATAGATACTTTTTGCTTACATATTCTCTATTTAAACCGGTATA
* * *
40361 TTTTTACTAGTTACATTGAAAATTTACCTATTACGTTATAATAATCAGTTTCGATGTTTTAAGGA
65 TTTTTA-TCGTTACATTGTAAATTTACCTATTACGTTATAATAATCGGTTTCGATGTTTTAAGGA
* * ** * *
40426 TCGATACTTCTTATACATGTATCGATACTTTTTGA-GTGCATCTCGTTCAGGATTCATATTGTAC
129 TCGATACTTCTCATACATGTATCGATACTTTAT-ACGTGCATCTCGTTTGGGATTCATACTGGAC
40490 AAAAAGTATCGATACAAATTAAAAAA
193 AAAAAGTATCGATACAAATTAAAAAA
40516 TATCGATACAAATTAAAAAAAGTATAGATACTTTTTGCTTACATATTCTCTATTTAAACCGGTAT
1 TATCGATAC-AATT-AAAAAAGTATAGATACTTTTTGCTTACATATTCTCTATTTAAACCGGTAT
*
40581 ATTTTTATCGGTTACATTGTATATTTACCTATTACGGTTATAATAATCGGTTTCGATGTTTTAAG
64 ATTTTTATC-GTTACATTGTAAATTTACCTATTAC-GTTATAATAATCGGTTTCGATGTTTTAAG
40646 GATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCATACTGGA
127 GATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCATACTGGA
40711 CAAAAAGTATCGATACAAATT-AAAAA
192 CAAAAAGTATCGATACAAATTAAAAAA
* * **
40737 -A--G-------T-----A-T-T-GATACTTTTTGCTTACCTCTTCTCTTGTTAAACCGGTATA-
1 TATCGATACAATTAAAAAAGTATAGATACTTTTTGCTTACATATTCTCTATTTAAACCGGTATAT
*
40783 TTTTACCGGTTACATTGTAAATTTACCTATTACGTTATAATAATCGGTTTCGATGTTTTAAGGAT
66 TTTTATC-GTTACATTGTAAATTTACCTATTACGTTATAATAATCGGTTTCGATGTTTTAAGGAT
* * *
40848 TGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGAGATTCATACTGGACAA
130 CGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCATACTGGACAA
*
40913 AAAGTATCGATACAAATTAAAAAG
195 AAAGTATCGATACAAATTAAAAAA
*
40937 TACCGATAC
1 TATCGATAC
40946 TTTTTGCTTA
Statistics
Matches: 392, Mismatches: 25, Indels: 39
0.86 0.05 0.09
Matches are distributed among these distances:
199 112 0.29
200 35 0.09
201 37 0.09
202 1 0.00
203 2 0.01
204 1 0.00
210 1 0.00
218 1 0.00
220 14 0.04
221 82 0.21
222 106 0.27
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (218 bp):
TATCGATACAATTAAAAAAGTATAGATACTTTTTGCTTACATATTCTCTATTTAAACCGGTATAT
TTTTATCGTTACATTGTAAATTTACCTATTACGTTATAATAATCGGTTTCGATGTTTTAAGGATC
GATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCATACTGGACAAA
AAGTATCGATACAAATTAAAAAA
Found at i:40859 original size:199 final size:200
Alignment explanation
Indices: 40510--41052 Score: 840
Period size: 199 Copynumber: 2.7 Consensus size: 200
40500 GATACAAATT
* *
40510 AAAAAATATCGATACAAATTAAAAAAAGTATAGATACTTTTTGCTTACATATTCTCTATTTAAAC
1 AAAAAGTATCGATACAAATT-AAAAAAGTATAGATACTTTTTGCTTACCTATTCTCTATTTAAAC
*
40575 CGGTATATTTTTATCGGTTACATTGTATATTTACCTATTACGGTTATAATAATCGGTTTCGATGT
65 CGGTATATTTTTACCGGTTACATTGTATATTTACCTATTAC-GTTATAATAATCGGTTTCGATGT
*
40640 TTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCAT
129 TTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGAGATTCAT
40705 ACTGGAC
194 ACTGGAC
* *
40712 AAAAAGTATCGATACAAATTAAAAAAGTATTGATACTTTTTGCTTACCTCTTCTCT-TGTTAAAC
1 AAAAAGTATCGATACAAATTAAAAAAGTATAGATACTTTTTGCTTACCTATTCTCTAT-TTAAAC
*
40776 CGGTATA-TTTTACCGGTTACATTGTAAATTTACCTATTACGTTATAATAATCGGTTTCGATGTT
65 CGGTATATTTTTACCGGTTACATTGTATATTTACCTATTACGTTATAATAATCGGTTTCGATGTT
* *
40840 TTAAGGATTGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGAGATTCATA
130 TTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGAGATTCATA
40905 CTGGAC
195 CTGGAC
** * *
40911 AAAAAGTATCGATACAAATT-AAAAAGTACCGATACTTTTTGCTTACCTATTCTCTCTTTAAACT
1 AAAAAGTATCGATACAAATTAAAAAAGTATAGATACTTTTTGCTTACCTATTCTCTATTTAAACC
* * * * * * ** *
40975 GATATATTTTTACCGGTAACATTGCATATTTACCAATTACATTATAATAATCGGGTAAGATTTTT
66 GGTATATTTTTACCGGTTACATTGTATATTTACCTATTACGTTATAATAATCGGTTTCGATGTTT
41040 TAAGGATCGATAC
131 TAAGGATCGATAC
41053 AATTTAAACA
Statistics
Matches: 314, Mismatches: 24, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
198 43 0.14
199 174 0.55
200 32 0.10
201 46 0.15
202 19 0.06
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (200 bp):
AAAAAGTATCGATACAAATTAAAAAAGTATAGATACTTTTTGCTTACCTATTCTCTATTTAAACC
GGTATATTTTTACCGGTTACATTGTATATTTACCTATTACGTTATAATAATCGGTTTCGATGTTT
TAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGAGATTCATAC
TGGAC
Found at i:40888 original size:421 final size:421
Alignment explanation
Indices: 40089--40945 Score: 1405
Period size: 421 Copynumber: 2.0 Consensus size: 421
40079 CATAATGGAC
* * *
40089 AAAAAGTATCGATACAAATTAAAAAAAGTATCGATACATTTTGCTTACCTCTTCTCTTGTTAAAC
1 AAAAAGTATCGATACAAATTAAAAAAAGTATAGATACATTTTGCTTACATATTCTCTTGTTAAAC
40154 CGGTATATTTTTATCAGTTACATTGTAAATTTACCTATTACATTATAATAATCGGTTTCGATGTT
66 CGGTATATTTTTATCAGTTACATTGTAAATTTACCTATTACATTATAATAATCGGTTTCGATGTT
* * *
40219 TTAAGGATTGATGCTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGGGATTCATA
131 TTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCATA
* *
40284 CTGGACAAAAGGTATCGATACATATTAAAAAAGTATCGATACTTTTTGCTTACCTATTATCTCGT
196 CTGGACAAAAAGTATCGATACAAATTAAAAAAGTATCGATACTTTTTGCTTACCTATTATCTCGT
*
40349 TAAACCGGTATATTTTTACTAGTTACATTGAAAATTTACCTATTACGTTATAATAATCAGTTTCG
261 TAAACCGGTATATTTTTACCAGTTACATTGAAAATTTACCTATTACGTTATAATAATCAGTTTCG
* *
40414 ATGTTTTAAGGATCGATACTTCTTATACATGTATCGATACTTTTTGAGTGCATCTCGTTCAG-GA
326 ATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGAGTGCATCTCGTT-AGAGA
* *
40478 TTCATATTGTACAAAAAGTATCGATACAAATT
390 TTCATACTGGACAAAAAGTATCGATACAAATT
* *
40510 AAAAAATATCGATACAAATTAAAAAAAGTATAGATACTTTTTGCTTACATATTCTCTAT-TTAAA
1 AAAAAGTATCGATACAAATTAAAAAAAGTATAGATACATTTTGCTTACATATTCTCT-TGTTAAA
* * *
40574 CCGGTATATTTTTATCGGTTACATTGTATATTTACCTATTACGGTTATAATAATCGGTTTCGATG
65 CCGGTATATTTTTATCAGTTACATTGTAAATTTACCTATTAC-ATTATAATAATCGGTTTCGATG
40639 TTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCA
129 TTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCA
* * * *
40704 TACTGGACAAAAAGTATCGATACAAATTAAAAAAGTATTGATACTTTTTGCTTACCTCTTCTCTT
194 TACTGGACAAAAAGTATCGATACAAATTAAAAAAGTATCGATACTTTTTGCTTACCTATTATCTC
* * *
40769 GTTAAACCGGTATA-TTTTACCGGTTACATTGTAAATTTACCTATTACGTTATAATAATCGGTTT
259 GTTAAACCGGTATATTTTTACCAGTTACATTGAAAATTTACCTATTACGTTATAATAATCAGTTT
* * *
40833 CGATGTTTTAAGGATTGATACTTCTCATACATGTATCGATACTTTATGCGTGCATCTCGTTTGAG
324 CGATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGAGTGCATCTCGTTAGAG
40898 ATTCATACTGGACAAAAAGTATCGATACAAATT
389 ATTCATACTGGACAAAAAGTATCGATACAAATT
*
40931 AAAAAGTACCGATAC
1 AAAAAGTATCGATAC
40946 TTTTTGCTTA
Statistics
Matches: 403, Mismatches: 30, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
420 1 0.00
421 245 0.61
422 157 0.39
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (421 bp):
AAAAAGTATCGATACAAATTAAAAAAAGTATAGATACATTTTGCTTACATATTCTCTTGTTAAAC
CGGTATATTTTTATCAGTTACATTGTAAATTTACCTATTACATTATAATAATCGGTTTCGATGTT
TTAAGGATCGATACTTCTCATACATGTATCGATACTTTATACGTGCATCTCGTTTGGGATTCATA
CTGGACAAAAAGTATCGATACAAATTAAAAAAGTATCGATACTTTTTGCTTACCTATTATCTCGT
TAAACCGGTATATTTTTACCAGTTACATTGAAAATTTACCTATTACGTTATAATAATCAGTTTCG
ATGTTTTAAGGATCGATACTTCTCATACATGTATCGATACTTTATGAGTGCATCTCGTTAGAGAT
TCATACTGGACAAAAAGTATCGATACAAATT
Found at i:41169 original size:128 final size:127
Alignment explanation
Indices: 40918--41186 Score: 283
Period size: 128 Copynumber: 2.1 Consensus size: 127
40908 GACAAAAAGT
* * * * *
40918 ATCGATACAAATTAAAAAGTACCGATACTTTTTGCTTACCTATTCTCTCTTTAAACTGATATATT
1 ATCGATACAATTTAAAAAGTACCGATACTTTATGCTTACCTATTCTCTCGTTAAACTGATAAATA
* * * * *
40983 TTTACCGGTAACATTGCATATTTACCAATTACATTATAATAATCGGGTAAGATTTTTTAAGG
66 TATACCGCTAACATTGCAAATTTACCAATTACATTATAATAATCGGGTAAGATGTTTTAAGA
** *
41045 ATCGATACAATTTAAACAAGTATTGATACTTTATG-TATACCTATTCTCTCGTTAAACTGGTAAA
1 ATCGATACAATTTAAA-AAGTACCGATACTTTATGCT-TACCTATTCTCTCGTTAAACTGATAAA
** * * * * * * **
41109 TATATACCGCTTGCATTGTAAATTTATCGATTACCTTCA-AATAATTGGTTTCGATGTTTTAAGA
64 TATATACCGCTAACATTGCAAATTTACCAATTACATT-ATAATAATCGGGTAAGATGTTTTAAGA
41173 ATCGATAC-ATTTAA
1 ATCGATACAATTTAA
41187 TATTTGTCTC
Statistics
Matches: 116, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
127 22 0.19
128 93 0.80
129 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (127 bp):
ATCGATACAATTTAAAAAGTACCGATACTTTATGCTTACCTATTCTCTCGTTAAACTGATAAATA
TATACCGCTAACATTGCAAATTTACCAATTACATTATAATAATCGGGTAAGATGTTTTAAGA
Found at i:48387 original size:184 final size:183
Alignment explanation
Indices: 47979--48620 Score: 942
Period size: 183 Copynumber: 3.5 Consensus size: 183
47969 CTTATTAAGT
* * * *
47979 ATCGATACCTTCAACATATCCGGCAGCGCTTTACCGGTTTTGTCATAATCAAATCT-GTTTTTTC
1 ATCGATACCTTCAACATATCCGGTAGCACTTTACCAGTTTTGTCATAATGAAA-CTGGTTTTTTC
*
48043 ATATTTTTACCTGTTATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGT
65 ATATTTTTACCTGTTATATTGTTACGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGT
*
48108 GCTATTA-TG-TGTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATAGA
130 GCTATTATTGCT-TTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGA
* * ***
48161 ATTGATACCTTCAACATATCCGATAGCACTTTATTGGTTTTGTCATAATGAAACTGGTTTTTTTC
1 ATCGATACCTTCAACATATCCGGTAGCACTTTACCAGTTTTGTCATAATGAAACTGG-TTTTTTC
* * *
48226 ATATTTTTACCTGTTATATTGTTACGTATCTATACATGTTTATAAAGTATAGATACTTTATAGAT
65 ATATTTTTACCTGTTATATTGTTACGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGT
**
48291 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATTTATACTTATTTGAATGGA
130 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGA
* * *
48345 ATCGATACCTTCAACATATCTGGTAGCACTTTACCAGTTTTGTCATATTGAACCTGGTTTTGTT-
1 ATCGATACCTTCAACATATCCGGTAGCACTTTACCAGTTTTGTCATAATGAAACTGGTTTT-TTC
*
48409 ATATTTTTACCTGTTATATTGTTACGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGC
65 ATATTTTTACCTGTTATATTGTTACGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGT
*
48474 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCGATAATTATTTGAATGGA
130 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGA
* ** *
48528 ATCGATACCTTCAACATATCCGGTAGCGCTTTACCAGTTTTGT-AT--TG-AACCCGTTTTGTCA
1 ATCGATACCTTCAACATATCCGGTAGCACTTTACCAGTTTTGTCATAATGAAACTGGTTTTTTCA
* *
48589 TA-TTTTACCTGATATATTGTTATGTATCGATA
66 TATTTTTACCTGTTATATTGTTACGTATCGATA
48621 TATATTGAAT
Statistics
Matches: 417, Mismatches: 37, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
178 29 0.07
179 10 0.02
180 2 0.00
181 2 0.00
182 49 0.12
183 232 0.56
184 92 0.22
185 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (183 bp):
ATCGATACCTTCAACATATCCGGTAGCACTTTACCAGTTTTGTCATAATGAAACTGGTTTTTTCA
TATTTTTACCTGTTATATTGTTACGTATCGATACATGTTTATAAAGTATCGATACTTTATAGGTG
CTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAATGGA
Found at i:49093 original size:26 final size:27
Alignment explanation
Indices: 49059--49120 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
49049 AAGATAAAAT
*
49059 TATATTTTAAAAAT-TTTAAACTTTTA
1 TATAATTTAAAAATATTTAAACTTTTA
* * *
49085 TATAATTTAAATATATTTATATTTTTA
1 TATAATTTAAAAATATTTAAACTTTTA
49112 -ATAATTTAA
1 TATAATTTAA
49121 TTTATATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 21 0.68
27 10 0.32
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (27 bp):
TATAATTTAAAAATATTTAAACTTTTA
Found at i:56271 original size:65 final size:61
Alignment explanation
Indices: 56153--56278 Score: 155
Period size: 65 Copynumber: 2.0 Consensus size: 61
56143 TTTCGAAAGT
* * *
56153 ATTTTATGCACCGATGCCGGCATGCATCGATGCACTCTGGATTTAATTTAAACATCGAATGC
1 ATTTTATGCACCGATGCAGCCATGCATCGATGCACTCTGGATTT-ATTGAAACATCGAATGC
*
56215 ATTTTATGCACCGATGCATAGACCATGCATCGATGCACTCCTGGCTTGT-TTGAAACATCGAATG
1 ATTTTATGCACCGATGC--AG-CCATGCATCGATGCACT-CTGGATT-TATTGAAACATCGAATG
56279 TAATTAGTGT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
62 17 0.31
64 1 0.02
65 30 0.55
66 6 0.11
67 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (61 bp):
ATTTTATGCACCGATGCAGCCATGCATCGATGCACTCTGGATTTATTGAAACATCGAATGC
Found at i:56293 original size:65 final size:64
Alignment explanation
Indices: 56173--56297 Score: 155
Period size: 65 Copynumber: 1.9 Consensus size: 64
56163 CCGATGCCGG
* *
56173 CATGCATCGATGCACTCTGGATTTAATTTAAACATCGAATGCATTTTATGCACCGATGCATAGAC
1 CATGCATCGATGCACTCTGGATTT-ATTGAAACATCGAATGCATATTATGCACCGATGCATAGAC
* * *
56238 CATGCATCGATGCACTCCTGGCTTGT-TTGAAACATCGAATGTA-ATTAGTGTACCGATGCA
1 CATGCATCGATGCACT-CTGGATT-TATTGAAACATCGAATGCATATTA-TGCACCGATGCA
56298 CTCATAGTGT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
64 3 0.06
65 42 0.81
66 6 0.12
67 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (64 bp):
CATGCATCGATGCACTCTGGATTTATTGAAACATCGAATGCATATTATGCACCGATGCATAGAC
Done.