genome.fa.s4300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004300.1 Hibiscus syriacus cultivar Beakdansim tig00009432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45905

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5224--5590	183	2.0	182	99	0	725	30	28	15	25	1.96
16707--16864	21	7.8	20	72	7	86	38	25	17	18	1.92
16831--17023	20	9.6	20	82	4	219	35	25	19	18	1.95
17404--17474	33	2.2	33	89	0	106	11	21	18	49	1.78
17554--17663	21	5.8	20	73	17	99	45	18	23	12	1.83
17547--17663	41	3.1	38	80	14	136	46	17	24	11	1.82
17614--17670	14	3.7	14	75	20	60	43	22	24	8	1.81
17606--17686	33	2.5	33	95	0	144	46	22	22	8	1.78
17682--17753	19	4.1	18	76	18	80	12	22	20	44	1.85
19449--19793	185	1.9	186	98	0	665	22	13	18	44	1.85
19449--19793	93	3.7	93	98	0	665	22	13	18	44	1.85
19792--19921	19	7.3	19	75	17	127	10	18	23	46	1.80
19809--19865	14	3.7	14	77	20	60	10	21	22	45	1.82
19792--19884	33	2.8	33	95	0	168	10	20	21	47	1.80
21843--21878	14	2.6	14	90	0	54	30	0	22	47	1.52
22057--22221	19	9.4	19	76	19	189	13	21	18	46	1.83
22035--22193	52	3.0	52	99	0	309	13	23	16	45	1.83
22035--22235	33	5.9	33	75	15	212	13	22	18	45	1.84
24518--24542	12	2.1	12	100	0	50	0	28	0	72	0.86
24716--24762	24	2.0	24	87	8	69	38	21	14	25	1.92
25444--25673	20	11.5	20	84	1	228	19	18	24	37	1.94
25660--25742	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25640--25738	42	2.4	43	77	11	100	21	18	23	37	1.94
39564--39602	17	2.3	17	95	0	69	7	46	10	35	1.67
42101--42191	40	2.4	38	80	9	105	21	20	10	46	1.82

Tables:   1

The End!