genome.fa.s4301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004301.1 Hibiscus syriacus cultivar Beakdansim tig00009434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112842

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2152--2242	32	2.9	32	75	19	109	35	17	16	30	1.92
2154--2259	31	3.4	31	74	11	99	31	17	16	33	1.93
12511--12539	2	14.5	2	100	0	58	51	0	0	48	1.00
12822--12876	27	2.0	27	92	0	92	49	1	10	38	1.49
16603--16643	21	2.0	21	85	0	55	19	19	24	36	1.95
20871--20928	23	2.7	21	75	5	53	15	20	27	36	1.93
21939--21972	11	2.8	12	86	13	52	50	0	2	47	1.16
24176--24230	23	2.4	23	96	0	101	41	27	10	20	1.85
31736--31772	14	2.6	14	91	4	56	56	16	13	13	1.67
33025--33064	20	2.0	20	95	0	71	17	15	22	45	1.85
33028--33076	20	2.5	20	86	0	62	20	12	16	51	1.76
32922--33604	183	3.6	194	84	7	758	28	14	12	44	1.81
33043--33604	183	3.1	182	88	2	842	28	14	11	45	1.80
33401--33455	21	2.7	19	78	13	65	14	14	14	56	1.68
38739--38789	12	4.2	12	74	18	52	31	3	1	62	1.24
38738--38789	17	3.0	16	76	23	52	30	3	1	63	1.23
49727--49769	13	3.2	13	80	9	50	83	11	2	2	0.83
49722--49762	21	2.0	21	95	0	73	82	9	4	2	0.89
50571--51319	105	7.1	105	95	1	1277	33	26	17	22	1.96
50571--51319	211	3.5	211	94	1	1297	33	26	17	22	1.96
52972--53040	23	2.7	28	72	25	71	28	4	2	63	1.28
54948--54986	13	2.9	14	84	7	53	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58639--58689	22	2.3	22	86	0	66	33	25	23	17	1.96
58684--58725	18	2.3	18	83	0	57	16	19	38	26	1.92
65787--65828	18	2.3	18	83	0	57	19	21	35	23	1.96
65984--66030	23	2.1	22	92	4	76	44	34	0	21	1.52
68590--68694	16	6.6	16	81	3	88	49	26	12	11	1.74
68590--68737	32	4.6	31	71	10	91	46	27	11	14	1.78
68783--68821	17	2.4	16	83	8	51	58	2	0	38	1.12
69456--69533	32	2.4	32	78	4	86	37	26	12	23	1.91
70746--70839	23	4.1	23	91	0	143	34	18	23	24	1.96
71742--71774	11	2.9	11	95	4	57	27	0	0	72	0.85
71743--71780	12	3.2	12	92	3	60	28	0	0	71	0.87
72108--72181	15	5.0	13	74	22	58	55	2	0	41	1.14
72105--72179	30	2.5	32	76	24	90	54	2	0	42	1.14
72108--72180	29	2.4	30	80	17	89	54	2	0	42	1.14
72575--72617	23	1.9	22	85	4	59	9	13	9	67	1.42
74310--74335	12	2.2	12	100	0	52	38	7	7	46	1.61
74534--74578	20	2.2	20	84	7	65	42	17	17	22	1.89
79516--79567	22	2.3	23	80	12	63	36	17	17	28	1.92
92133--92215	35	2.5	33	80	13	89	57	9	7	25	1.56
92206--92255	21	2.4	20	77	9	55	68	14	2	16	1.31
92209--92234	12	2.2	12	100	0	52	76	7	0	15	0.99
94507--94579	29	2.5	31	80	10	84	63	2	1	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94546--94579	17	1.9	18	88	5	52	64	5	0	29	1.17
94968--95068	29	3.5	29	90	0	139	46	6	32	13	1.70
101367--101419	19	2.7	20	74	11	56	30	0	3	66	1.10
102413--102481	20	3.3	21	82	8	95	40	11	1	46	1.49
102413--102481	21	3.3	21	86	8	104	40	11	1	46	1.49
104382--104491	36	3.1	36	91	0	166	32	13	18	35	1.90
109135--109197	31	2.0	31	100	0	126	31	9	31	26	1.88
109746--109860	37	3.2	36	87	9	173	33	14	17	33	1.90
110345--110387	21	2.0	21	86	0	59	37	6	37	18	1.78

Tables:   1

The End!