Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004302.1 Hibiscus syriacus cultivar Beakdansim tig00009435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 139261
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:1750 original size:18 final size:18
Alignment explanation
Indices: 1729--1798 Score: 61
Period size: 20 Copynumber: 3.7 Consensus size: 18
1719 GCCTAATTTT
1729 GGTATCGATACCATATAG
1 GGTATCGATACCATATAG
*
1747 GGTATC-AGTACCATAGTAT
1 GGTATCGA-TACCATA-TAG
* *
1766 AGTAGTCGATACCATGGTAAG
1 GGTA-TCGATACCAT-AT-AG
1787 GGTATCGATACC
1 GGTATCGATACC
1799 GGGCCACATC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
17 1 0.02
18 13 0.32
19 5 0.12
20 17 0.41
21 5 0.12
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (18 bp):
GGTATCGATACCATATAG
Found at i:1872 original size:22 final size:22
Alignment explanation
Indices: 1841--1882 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
1831 CTGGAAGGGG
*
1841 GTATCGATACCAAT-GTAGGGTA
1 GTATCAATACC-ATGGTAGGGTA
1863 GTATCAATACCATGGTAGGG
1 GTATCAATACCATGGTAGGG
1883 ATATTGATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (22 bp):
GTATCAATACCATGGTAGGGTA
Found at i:2515 original size:44 final size:45
Alignment explanation
Indices: 2331--2633 Score: 408
Period size: 45 Copynumber: 6.9 Consensus size: 45
2321 AAAGGATGCC
* *
2331 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACC
1 ATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACT
* *
2376 ATAGTTG-AATG--TAT-GGTATATTATCAATAGAAAAGTATACT
1 ATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACT
*
2417 ATAGTTGAAATGCATATGGGTGA-ATTATCAACAGAAAAGTATGCT
1 ATAGTTGAAATGCATATGGGT-ACATTATCAACAGAAAAGTATACT
*
2462 ATAGTTGAAATGCATATGGGTGCATTATCAACAG-AAAGTATACT
1 ATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACT
* * *
2506 ATAGTTGAAATGTATATGGATACATTATCAACAGAAAACTATACT
1 ATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACT
2551 ATAGTTGAAATG--TATGGGGTACATTATCAACA-AAAAGTATACT
1 ATAGTTGAAATGCATAT-GGGTACATTATCAACAGAAAAGTATACT
*** *
2594 ATAGTTGAAATGCATATATATGCATTATCAACAGAAAAGT
1 ATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAGT
2634 GTATAGTGGT
Statistics
Matches: 230, Mismatches: 17, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
41 31 0.13
42 7 0.03
43 25 0.11
44 74 0.32
45 92 0.40
46 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.31
Consensus pattern (45 bp):
ATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACT
Found at i:2523 original size:89 final size:87
Alignment explanation
Indices: 2331--2633 Score: 414
Period size: 89 Copynumber: 3.5 Consensus size: 87
2321 AAAGGATGCC
* * *
2331 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACCATAGTTG-AATGTAT-GGTA
1 ATAGTTGAAATGCATATGGATACATTATCAACAGAAAAGTATACTATAGTTGAAATGTATGGGTA
* *
2394 TATTATCAATAGAAAAGTATACT
66 CATTATCAACAG-AAAGTATACT
* *
2417 ATAGTTGAAATGCATATGGGTGA-ATTATCAACAGAAAAGTATGCTATAGTTGAAATGCATATGG
1 ATAGTTGAAATGCATATGGAT-ACATTATCAACAGAAAAGTATACTATAGTTGAAATG--TATGG
*
2481 GTGCATTATCAACAGAAAGTATACT
63 GTACATTATCAACAGAAAGTATACT
* *
2506 ATAGTTGAAATGTATATGGATACATTATCAACAGAAAACTATACTATAGTTGAAATGTATGGGGT
1 ATAGTTGAAATGCATATGGATACATTATCAACAGAAAAGTATACTATAGTTGAAATGTAT-GGGT
*
2571 ACATTATCAACAAAAAGTATACT
65 ACATTATCAACAGAAAGTATACT
** *
2594 ATAGTTGAAATGCATATATATGCATTATCAACAGAAAAGT
1 ATAGTTGAAATGCATATGGATACATTATCAACAGAAAAGT
2634 GTATAGTGGT
Statistics
Matches: 193, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
86 47 0.24
87 8 0.04
88 61 0.32
89 64 0.33
90 13 0.07
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.31
Consensus pattern (87 bp):
ATAGTTGAAATGCATATGGATACATTATCAACAGAAAAGTATACTATAGTTGAAATGTATGGGTA
CATTATCAACAGAAAGTATACT
Found at i:10098 original size:13 final size:13
Alignment explanation
Indices: 10080--10104 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10070 CATAGTTGAA
10080 CAGTCTTCATATG
1 CAGTCTTCATATG
10093 CAGTCTTCATAT
1 CAGTCTTCATAT
10105 ACATGTCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:15301 original size:18 final size:18
Alignment explanation
Indices: 15278--15314 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
15268 TCTACCATGT
15278 CCCATTTTAAACAAGTGA
1 CCCATTTTAAACAAGTGA
*
15296 CCCATTTTAAACAATTGA
1 CCCATTTTAAACAAGTGA
15314 C
1 C
15315 TGGTGTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (18 bp):
CCCATTTTAAACAAGTGA
Found at i:19339 original size:14 final size:16
Alignment explanation
Indices: 19320--19351 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
19310 CGATTATAAC
19320 TAAAATAG-CC-AAAT
1 TAAAATAGTCCTAAAT
19334 TAAAATAGTCCTAAAT
1 TAAAATAGTCCTAAAT
19350 TA
1 TA
19352 CTATTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28
Consensus pattern (16 bp):
TAAAATAGTCCTAAAT
Found at i:33119 original size:18 final size:19
Alignment explanation
Indices: 33096--33131 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
33086 TGTTTATTAT
33096 TTATATAATATAT-GTATG
1 TTATATAATATATAGTATG
*
33114 TTATATAGTATATAGTAT
1 TTATATAATATATAGTAT
33132 TATATTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (19 bp):
TTATATAATATATAGTATG
Found at i:33125 original size:7 final size:7
Alignment explanation
Indices: 33115--33460 Score: 126
Period size: 7 Copynumber: 48.9 Consensus size: 7
33105 ATATGTATGT
33115 TATATAG
1 TATATAG
33122 TATATAG
1 TATATAG
33129 TAT-TA-
1 TATATAG
*
33134 TATTATAT
1 TA-TATAG
* *
33142 TACACAG
1 TATATAG
* *
33149 TATGTAT
1 TATATAG
33156 TATAGT-G
1 TATA-TAG
*
33163 TATATAT
1 TATATAG
*
33170 TATATTG
1 TATATAG
* *
33177 TTGTTATAT
1 -T-ATATAG
*
33186 TATATAT
1 TATATAG
33193 TATATAG
1 TATATAG
33200 TATAGTA-
1 TATA-TAG
*
33207 TATATAA
1 TATATAG
33214 TATAATATGG
1 TAT-ATA--G
*
33224 TCT-TA-
1 TATATAG
33229 TATATAG
1 TATATAG
*
33236 TATATAT
1 TATATAG
*
33243 TATGTAG
1 TATATAG
* *
33250 TTATTGTAT
1 -TA-TATAG
33259 TATATAG
1 TATATAG
33266 TATATA-
1 TATATAG
33272 TATTATAG
1 TA-TATAG
*
33280 TATTTAG
1 TATATAG
33287 TATATA-
1 TATATAG
33293 T-TATAG
1 TATATAG
*
33299 CATATATAT
1 --TATATAG
33308 TATATAG
1 TATATAG
33315 TATATA-
1 TATATAG
* *
33321 TTTATAT
1 TATATAG
33328 TATATAG
1 TATATAG
33335 TATATAG
1 TATATAG
*
33342 TATATAT
1 TATATAG
*
33349 TATATAT
1 TATATAG
*
33356 TATATAT
1 TATATAG
*
33363 TATATAA
1 TATATAG
*
33370 TATATAA
1 TATATAG
*
33377 TATTATAT
1 TA-TATAG
33385 TATATA-
1 TATATAG
*
33391 TTTATA-
1 TATATAG
*
33397 TAATATTG
1 T-ATATAG
*
33405 TATAT-T
1 TATATAG
33411 TATATAG
1 TATATAG
*
33418 TATTAATAT
1 TA-T-ATAG
*
33427 TTTATAG
1 TATATAG
*
33434 TATAT-T
1 TATATAG
*
33440 TATATGG
1 TATATAG
*
33447 TATTATAT
1 TA-TATAG
33455 TATATA
1 TATATA
33461 TATTTATTAA
Statistics
Matches: 259, Mismatches: 49, Indels: 62
0.70 0.13 0.17
Matches are distributed among these distances:
5 8 0.03
6 32 0.12
7 169 0.65
8 33 0.13
9 15 0.06
10 2 0.01
ACGTcount: A:0.39, C:0.01, G:0.08, T:0.51
Consensus pattern (7 bp):
TATATAG
Found at i:33198 original size:2 final size:2
Alignment explanation
Indices: 33181--33463 Score: 125
Period size: 2 Copynumber: 147.5 Consensus size: 2
33171 ATATTGTTGT
33181 TA TA T- TA TA TA T- TA TA TA GTA TA GTA TA TA TA -A TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA TA TA
* * * *
33221 TGG TC T- TA TA TA TA GTA TA TA T- TA TG TA GT- TA T- TG TA T-
1 T-A TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA
* *
33259 TA TA TA GTA TA TA TA T- TA TA GTA TT TA GTA TA TA T- TA TA GCA
1 TA TA TA -TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA -TA
*
33301 TA TA TA T- TA TA TA GTA TA TA TT TA TA T- TA TA TA GTA TA TA GTA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
33344 TA TA T- TA TA TA T- TA TA TA T- TA TA TA -A TA TA TA -A TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
33380 TA TA T- TA TA TA TT TA TA TA -A TA T- TG TA TA TT TA TA TA GTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * *
33420 T- TA -A TA T- TT TA TA GTA TA TT TA TA TGG TA T- TA TA T- TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA T-A TA TA TA TA TA TA TA
33459 TA TA T
1 TA TA T
33464 TTATTAATAT
Statistics
Matches: 218, Mismatches: 21, Indels: 84
0.67 0.07 0.26
Matches are distributed among these distances:
1 27 0.12
2 165 0.76
3 26 0.12
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33297 original size:5 final size:5
Alignment explanation
Indices: 33251--33482 Score: 97
Period size: 5 Copynumber: 47.2 Consensus size: 5
33241 ATTATGTAGT
* *
33251 TATTG TATTA TA-TA GTATATA TATTA TAGTA T-TTA GTA-TA TATTA
1 TATTA TATTA TATTA -TAT-TA TATTA TATTA TATTA -TATTA TATTA
**
33296 TAGCA TA-TA TATTA TA-TA GTA-TA TATTTA TATTA TA-TA GTA-TA
1 TATTA TATTA TATTA TATTA -TATTA TA-TTA TATTA TATTA -TATTA
*
33339 TAGTATA TATTA TA-TA T-TATA TATTA TATAATA TATAA TATTA TATTA
1 TA-T-TA TATTA TATTA TAT-TA TATTA TAT--TA TATTA TATTA TATTA
* * *
33387 TA-TA T-TTA TATAA TATTG TA-TA T-TTA TA-TA GTATTA -A-TA TTTTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TATTA TATTA
* **
33431 TAGTA TATTTA TATGG TATTA TATTA TA-TA TATT- TATTAA TATTA TTATTA
1 TATTA TA-TTA TATTA TATTA TATTA TATTA TATTA TATT-A TATTA -TATTA
33482 T
1 T
33483 TGGTTTTAGT
Statistics
Matches: 175, Mismatches: 20, Indels: 64
0.68 0.08 0.25
Matches are distributed among these distances:
3 2 0.01
4 42 0.24
5 96 0.55
6 24 0.14
7 11 0.06
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (5 bp):
TATTA
Found at i:33343 original size:55 final size:57
Alignment explanation
Indices: 33184--33461 Score: 191
Period size: 55 Copynumber: 4.9 Consensus size: 57
33174 TTGTTGTTAT
* * * * * * *
33184 ATTATATATTATATAGTATAGTATATATAATATAATATGGTCT-TA-TATATAGTATAT
1 ATTATATATTATATAATATA-TA-ATATTATATTATATAGTATATAGTATATATTATAC
* * * * *
33241 ATTATGTAGTTATTGTATTATATAGTA-TATA-TATTATAGTATTTAGTATATATTATAGC
1 ATTATATA-TTA-TATAATATATAATATTATATTA-TATAGTATATAGTATATATTATA-C
* *
33300 A-TATATATTATATAGTATAT-AT-TTATATTATATAGTATATAGTATATATTATAT
1 ATTATATATTATATAATATATAATATTATATTATATAGTATATAGTATATATTATAC
* * *
33354 ATTATATATTATATAATATATAATATTATATTATATA-TTTATA-TA-ATATTGTAT
1 ATTATATATTATATAATATATAATATTATATTATATAGTATATAGTATATATTATAC
* * * * * *
33408 ATTTATATAGTAT-TAATATTTTATAGTATATTTATATGGTATTATATTATATAT
1 A-TTATATATTATATAATATATAATATTATA-TTATATAGTA-TATAGTATATAT
33462 ATTTATTAAT
Statistics
Matches: 179, Mismatches: 25, Indels: 32
0.76 0.11 0.14
Matches are distributed among these distances:
54 24 0.13
55 64 0.36
56 27 0.15
57 30 0.17
58 22 0.12
59 12 0.07
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (57 bp):
ATTATATATTATATAATATATAATATTATATTATATAGTATATAGTATATATTATAC
Found at i:33449 original size:29 final size:26
Alignment explanation
Indices: 33258--33482 Score: 145
Period size: 25 Copynumber: 8.7 Consensus size: 26
33248 AGTTATTGTA
33258 TTATATAGTATATATATTATAG--TAT
1 TTATATAGTAT-TATATTATAGTATAT
**
33283 TTAGTATA-TATTATAGCATA-TATA-
1 TTA-TATAGTATTATATTATAGTATAT
*
33307 TTATATAGTA-TATATTTATATTATAT
1 TTATATAGTATTATA-TTATAGTATAT
*
33333 AGTATATAGTA-TATATTATA-TATTAT
1 -TTATATAGTATTATATTATAGTA-TAT
* * * *
33359 ATATTATA-TAATATATAATATTATA-
1 TTA-TATAGTATTATATTATAGTATAT
*
33384 TTATATA-T-TTATATAATATTGTATAT
1 TTATATAGTATTATAT--TATAGTATAT
33410 TTATATAGTATTAATATTTTATAGTATAT
1 TTATATAGTATT-ATA--TTATAGTATAT
*
33439 TTATATGGTATTATATTATA-TATAT
1 TTATATAGTATTATATTATAGTATAT
*
33464 TTAT-TAATATTATTATTAT
1 TTATATAGTATTA-TATTAT
33483 TGGTTTTAGT
Statistics
Matches: 163, Mismatches: 16, Indels: 42
0.74 0.07 0.19
Matches are distributed among these distances:
23 13 0.08
24 26 0.16
25 41 0.25
26 38 0.23
27 16 0.10
28 5 0.03
29 23 0.14
31 1 0.01
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (26 bp):
TTATATAGTATTATATTATAGTATAT
Found at i:35829 original size:13 final size:13
Alignment explanation
Indices: 35803--35842 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
35793 TGACATGCAA
* *
35803 TTATGACACGCAT
1 TTATGACGCACAT
35816 TTATGACGCACAT
1 TTATGACGCACAT
*
35829 TTATGACGCTCAT
1 TTATGACGCACAT
35842 T
1 T
35843 GTGCGTCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (13 bp):
TTATGACGCACAT
Found at i:39019 original size:16 final size:16
Alignment explanation
Indices: 38981--39019 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
38971 GTTCATCAAC
* *
38981 TTGCAGCTATAAACCT
1 TTGCAGTTAGAAACCT
38997 TTGCAGTTAGAAACCT
1 TTGCAGTTAGAAACCT
39013 TTGCAGT
1 TTGCAGT
39020 GTACCATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (16 bp):
TTGCAGTTAGAAACCT
Found at i:39091 original size:2 final size:2
Alignment explanation
Indices: 39084--39117 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
39074 AATGAAATCA
39084 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
39118 CCAATATCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41914 original size:17 final size:17
Alignment explanation
Indices: 41894--41955 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
41884 TAGTCTAACA
*
41894 AATGAACTAGTTTGATG
1 AATGAACTAGTTTAATG
*
41911 AATGAACTAGTTTAATT
1 AATGAACTAGTTTAATG
* * *
41928 AATGAACTAACTTTATTC
1 AATGAACT-AGTTTAATG
41946 AATGAACTAG
1 AATGAACTAG
41956 ATGCATGAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 24 0.63
18 14 0.37
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (17 bp):
AATGAACTAGTTTAATG
Found at i:41949 original size:18 final size:18
Alignment explanation
Indices: 41911--41954 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
41901 TAGTTTGATG
*
41911 AATGAACT-AGTTTAATT
1 AATGAACTAACTTTAATT
41928 AATGAACTAACTTT-ATT
1 AATGAACTAACTTTAATT
41945 CAATGAACTA
1 -AATGAACTA
41955 GATGCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (18 bp):
AATGAACTAACTTTAATT
Found at i:45826 original size:19 final size:20
Alignment explanation
Indices: 45799--45849 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
45789 ATTATATAAA
*
45799 ATATATTTTTAT-TATAATT
1 ATATTTTTTTATGTATAATT
**
45818 ATATTTTTTT-TGTATTTTT
1 ATATTTTTTTATGTATAATT
45837 ATATTTTTATTAT
1 ATATTTTT-TTAT
45850 AGTTTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 22 0.85
20 2 0.08
21 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
ATATTTTTTTATGTATAATT
Found at i:46814 original size:34 final size:35
Alignment explanation
Indices: 46746--46815 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
46736 GTTAAAAACT
*
46746 ATATTAATATACTAAATTAAAAGTAGGGCCCATAA
1 ATATTAATAAACTAAATTAAAAGTAGGGCCCATAA
* *
46781 ATATTAATAAATTAAATTAAAAG-CGGGCCCATAA
1 ATATTAATAAACTAAATTAAAAGTAGGGCCCATAA
46815 A
1 A
46816 CTTATTTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 11 0.34
35 21 0.66
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.27
Consensus pattern (35 bp):
ATATTAATAAACTAAATTAAAAGTAGGGCCCATAA
Found at i:57850 original size:16 final size:16
Alignment explanation
Indices: 57829--57870 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
57819 ATCCTTAAAA
*
57829 AGATAAAAAAAATGTT
1 AGATAAAAAAAATATT
57845 AGATAAAAAAAATATT
1 AGATAAAAAAAATATT
*
57861 AAATAAAAAA
1 AGATAAAAAA
57871 TAAGATTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (16 bp):
AGATAAAAAAAATATT
Found at i:57878 original size:17 final size:16
Alignment explanation
Indices: 57831--57879 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
57821 CCTTAAAAAG
*
57831 ATAAAAAAAATG-TTAG
1 ATAAAAAAAA-GATTAA
*
57847 ATAAAAAAAATATTAA
1 ATAAAAAAAAGATTAA
57863 ATAAAAAATAAGATTAA
1 ATAAAAAA-AAGATTAA
57880 CTAACGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 21 0.75
17 7 0.25
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (16 bp):
ATAAAAAAAAGATTAA
Found at i:58034 original size:4 final size:4
Alignment explanation
Indices: 58020--58052 Score: 57
Period size: 4 Copynumber: 8.0 Consensus size: 4
58010 CCAAAAAAGA
58020 AAAT AAAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT
58053 GAAAGATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:59374 original size:38 final size:37
Alignment explanation
Indices: 59321--59657 Score: 203
Period size: 38 Copynumber: 9.4 Consensus size: 37
59311 AATATAATAT
*
59321 AAACTATATAATATATATATTTCAAAAATATTTTTTTA
1 AAACTATATATTATATATATTTCAAAAATA-TTTTTTA
* **
59359 AAACTATATATTATAT-T-CTT-AAAAA-A-TTTCCA
1 AAACTATATATTATATATATTTCAAAAATATTTTTTA
59391 AAACTATATATTATATAGT-TTTCAAAAATGA---TTTA
1 AAACTATATATTATATA-TATTTCAAAAAT-ATTTTTTA
* * *
59426 AGAA-TAT-TA-TATA-AGA-TTCCAAAATATGTTTTA
1 A-AACTATATATTATATATATTTCAAAAATATTTTTTA
*
59459 AAACTATATATTATATATATTTTC-AAAATGA--TTTCA
1 AAACTATATATTATATATA-TTTCAAAAAT-ATTTTTTA
*** **
59495 AAACTATATATTATATATATTTTCAAATGCATTTTCAA
1 AAACTATATATTATATATA-TTTCAAAAATATTTTTTA
* * * * *
59533 AAACTATACATTATATATGTTTTCAAAAAAATATTTAA
1 AAACTATATATTATATAT-ATTTCAAAAATATTTTTTA
* * * *
59571 AAACTATATACTATATATATTTTC-GAAAT-GTTTTTG
1 AAACTATATATTATATATA-TTTCAAAAATATTTTTTA
* * * *
59607 AAACTATATAGTATATATATTTTAAAAACA-TTTTCA
1 AAACTATATATTATATATATTTCAAAAATATTTTTTA
*
59643 AAAAT-TATATTATAT
1 AAACTATATATTATAT
59658 TGCTATAAAA
Statistics
Matches: 235, Mismatches: 40, Indels: 51
0.72 0.12 0.16
Matches are distributed among these distances:
30 1 0.00
31 8 0.03
32 23 0.10
33 12 0.05
34 8 0.03
35 32 0.14
36 67 0.29
37 12 0.05
38 72 0.31
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (37 bp):
AAACTATATATTATATATATTTCAAAAATATTTTTTA
Found at i:59505 original size:36 final size:36
Alignment explanation
Indices: 59321--59657 Score: 217
Period size: 36 Copynumber: 9.4 Consensus size: 36
59311 AATATAATAT
* *
59321 AAACTATATAATATATATA-TTTCAAAAAT-ATTTTTTTA
1 AAACTATATATTATATATATTTTC-AAAATGA---TTTCA
* *
59359 AAACTATATA-T-TATAT-TCTT-AAAA-AATTTCCA
1 AAACTATATATTATATATATTTTCAAAATGATTT-CA
*
59391 AAACTATATATTATATA-GTTTTCAAAAATGATTT-A
1 AAACTATATATTATATATATTTTC-AAAATGATTTCA
* * *
59426 AGAA-TAT-TA-TATA-AGA-TTCCAAAAT-ATGTTTTA
1 A-AACTATATATTATATATATTTTCAAAATGA--TTTCA
59459 AAACTATATATTATATATATTTTCAAAATGATTTCA
1 AAACTATATATTATATATATTTTCAAAATGATTTCA
59495 AAACTATATATTATATATATTTTC-AAATGCATTTTCAA
1 AAACTATATATTATATATATTTTCAAAATG-A-TTTC-A
* * *
59533 AAACTATACATTATATATGTTTTCAAAAAAAT-ATTTAA
1 AAACTATATATTATATATATTTTC---AAAATGATTTCA
* * * **
59571 AAACTATATACTATATATATTTTCGAAATGTTTTTG
1 AAACTATATATTATATATATTTTCAAAATGATTTCA
* **
59607 AAACTATATAGTATATATATTTT-AAAAACATTTTCA
1 AAACTATATATTATATATATTTTCAAAATGA-TTTCA
*
59643 AAAAT-TATATTATAT
1 AAACTATATATTATAT
59658 TGCTATAAAA
Statistics
Matches: 242, Mismatches: 28, Indels: 61
0.73 0.08 0.18
Matches are distributed among these distances:
30 1 0.00
31 8 0.03
32 20 0.08
33 10 0.04
34 16 0.07
35 30 0.12
36 76 0.31
37 17 0.07
38 56 0.23
39 3 0.01
40 1 0.00
42 4 0.02
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (36 bp):
AAACTATATATTATATATATTTTCAAAATGATTTCA
Found at i:59505 original size:68 final size:68
Alignment explanation
Indices: 59321--59505 Score: 184
Period size: 68 Copynumber: 2.7 Consensus size: 68
59311 AATATAATAT
* * * *
59321 AAACTATATAATATATATA-TTTCAAAAAT-ATTTTTTTAAAACTATATATTATATTCTTAAAAA
1 AAACTATATATTATATATATTTTCAAAAATGA----TTTAAAACTATATATAAGATTCTCAAAAA
59384 ATTTCCA
62 ATTTCCA
* *
59391 AAACTATATATTATATA-GTTTTCAAAAATGATTTAAGAA-TATTATATAAGATTC-CAAAATAT
1 AAACTATATATTATATATATTTTCAAAAATGATTTAA-AACTA-TATATAAGATTCTCAAAAAAT
**
59453 GTTTTA
64 -TTCCA
59459 AAACTATATATTATATATATTTTC-AAAATGATTTCAAAACTATATAT
1 AAACTATATATTATATATATTTTCAAAAATGATTT-AAAACTATATAT
59506 TATATATATT
Statistics
Matches: 98, Mismatches: 9, Indels: 18
0.78 0.07 0.14
Matches are distributed among these distances:
67 13 0.13
68 49 0.50
69 9 0.09
70 26 0.27
71 1 0.01
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (68 bp):
AAACTATATATTATATATATTTTCAAAAATGATTTAAAACTATATATAAGATTCTCAAAAAATTT
CCA
Found at i:59547 original size:74 final size:71
Alignment explanation
Indices: 59451--59657 Score: 231
Period size: 74 Copynumber: 2.8 Consensus size: 71
59441 ATTCCAAAAT
59451 ATGTTTT-AAAACTATATATTATATATATTTTCAAAATGATTTCAAAACTATATATTATATATAT
1 ATGTTTTAAAAACTATATATTATATATATTTTCAAAAT-ATTTCAAAACTATATATTATATATAT
59515 TTTC-AA
65 TTTCGAA
* * * *
59521 ATGCATTTTCAAAAACTATACATTATATATGTTTTCAAAAAAATATTTAAAAACTATATACTATA
1 ATG--TTTT-AAAAACTATATATTATATATATTTTC---AAAATATTTCAAAACTATATATTATA
59586 TATATTTTCGAA
60 TATATTTTCGAA
** * * * *
59598 ATGTTTTTGAAACTATATAGTATATATATTTTAAAAACATTTTCAAAAAT-TATATTATAT
1 ATGTTTTAAAAACTATATATTATATATATTTTCAAAATA-TTTCAAAACTATATATTATAT
59658 TGCTATAAAA
Statistics
Matches: 114, Mismatches: 14, Indels: 17
0.79 0.10 0.12
Matches are distributed among these distances:
70 3 0.03
71 14 0.12
72 12 0.11
74 43 0.38
75 4 0.04
76 28 0.25
77 10 0.09
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (71 bp):
ATGTTTTAAAAACTATATATTATATATATTTTCAAAATATTTCAAAACTATATATTATATATATT
TTCGAA
Found at i:60371 original size:84 final size:84
Alignment explanation
Indices: 60246--61053 Score: 890
Period size: 84 Copynumber: 9.8 Consensus size: 84
60236 TTGAATATAA
* * * * *
60246 TCGAACTCGAAGGTC--T--TTAGCAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAATAATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
*
60307 GCCTTGGAGATGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* *
60326 TCGAACTCAAAGGTCTTTGGTTTGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
*
60391 GTCTTGGAGCTGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* * * * * * * **
60410 TCGAACTCAAAGGTTTTTTGTTGGTAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGACAT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
60475 GCCTTGGAGCTGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* *
60494 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTACAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
* * * *
60559 GCCCTCGAAGCTGAGTGTAA
66 G-CCTTGGAGCTGAGCGTAG
* * * * * *
60579 TCAAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
* * * *
60643 GCCCTCGAAGCTGAGTGTAA
66 G-CCTTGGAGCTGAGCGTAG
* * * * *
60663 TCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
* * * *
60727 GCCCTCGAAGCTGAGTGTAA
66 G-CCTTGGAGCTGAGCGTAG
** * * *
60747 TCGAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
60808 GCCTT-GAGCTGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* * * * *
60826 TCGGACTCAAAGGTCTTGGGTCGGCAGATAACCCTTCTCGATTTAAGTTATGCTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
* * * *
60891 GCCCTCGAAGCTGAGTGTAA
66 G-CCTTGGAGCTGAGCGTAG
** * * *
60911 TCGAACTCGGGGGTC-TT--TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
60973 GCCTT-GAGCTGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* * *
60991 TCGAACTCAAAGGTCTTTGGTTGGCGGATAACCCTTCTCGACTTAAGTTATGCCGCAAATGAT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAT
61054 TTGTTTAAGA
Statistics
Matches: 623, Mismatches: 90, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
79 21 0.03
80 39 0.06
81 42 0.07
82 43 0.07
83 79 0.13
84 345 0.55
85 54 0.09
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (84 bp):
TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGT
GCCTTGGAGCTGAGCGTAG
Found at i:60958 original size:165 final size:165
Alignment explanation
Indices: 60243--61053 Score: 1027
Period size: 168 Copynumber: 4.9 Consensus size: 165
60233 AAGTTGAATA
** * * *
60243 TAATCGAACTCGAAGGTC-TTTAGCAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAATAATGT
1 TAATCGAACTCGGGGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
* *
60307 GCCTTGGAGATGAGCGTAGTCGAACTCAAAGGTCTTTGGTTTGCAGATAACCCTTCTCGACTTAA
66 GCCTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAA
* * * *
60372 GTTATGCTGCAAATGATGTG-TCTTGGAGCTGAGCG
130 GTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
* * ** * * * * * * *
60407 TAGTCGAACTCAAAGGTTTTTTGTTGGTAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGA
1 TAATCGAACTC--GGGGGTCTT-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGA
** * *
60472 CATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTTGACT
63 TGTGCCTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACT
*
60537 TAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTG
127 TAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
* ** * * * * * * *
60576 TAATCAAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
1 TAATCGAACTCGGGGGTCTTT--TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGAT
* * * * * * *
60641 GTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCT
64 GTG-CCTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACT
* *
60705 TGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
127 TAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
*
60744 TAATCGAACTCGGGGGTC-TTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGT
1 TAATCGAACTCGGGGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
* * * *
60808 GCCTTGAGCTGAGCGTAGTCGGACTCAAAGGTCTTGGGTCGGCAGATAACCCTTCTCGATTTAAG
66 GCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
60873 TTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
*
60908 TAATCGAACTCGGGGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGT
1 TAATCGAACTCGGGGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
*
60973 GCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCGGATAACCCTTCTCGACTTAAG
66 GCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
*
61038 TTATGCCGCAAATGAT
131 TTATGCTGCAAATGAT
61054 TTGTTTAAGA
Statistics
Matches: 553, Mismatches: 83, Indels: 21
0.84 0.13 0.03
Matches are distributed among these distances:
163 27 0.05
164 86 0.16
165 158 0.29
166 2 0.00
167 6 0.01
168 221 0.40
169 53 0.10
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (165 bp):
TAATCGAACTCGGGGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
GCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
TTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
Found at i:64448 original size:18 final size:19
Alignment explanation
Indices: 64408--64452 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
64398 AGTTAATGTG
64408 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
64427 AATGCAAAGAAAATAA-AA
1 AATGCAAAGAAAATAACAA
64445 AATGCAAA
1 AATGCAAA
64453 ATGTCTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.69, C:0.09, G:0.11, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:66240 original size:14 final size:15
Alignment explanation
Indices: 66216--66255 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
66206 ATCCTTAAAA
*
66216 AGATAAAAAAATGTT
1 AGATAAAAAAATATT
66231 AGATAAAAAAATATT
1 AGATAAAAAAATATT
*
66246 AAATAAAAAA
1 AGATAAAAAA
66256 TAAGATTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (15 bp):
AGATAAAAAAATATT
Found at i:66422 original size:17 final size:17
Alignment explanation
Indices: 66388--66438 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
66378 AACGCTAAGG
66388 AAAACCAAA-AAAGAAAAT
1 AAAA-CAAATAAAG-AAAT
66406 AAAACAAATAAAGAAAT
1 AAAACAAATAAAGAAAT
*
66423 -AAATAAATAAATGAAA
1 AAAACAAATAAA-GAAA
66439 GATATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.33
17 12 0.40
18 8 0.27
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (17 bp):
AAAACAAATAAAGAAAT
Found at i:67868 original size:38 final size:36
Alignment explanation
Indices: 67697--68050 Score: 225
Period size: 36 Copynumber: 9.8 Consensus size: 36
67687 AATATAATAT
* *
67697 AAACTATATA--ATATATATTTCAAAAATATTTTTTA
1 AAACTATATATTATATATATTTTAAAAAT-GTTTTTA
* * **
67732 AAACTATATA-T-TATAT-TCTTAAAAA-ATTTCCA
1 AAACTATATATTATATATATTTTAAAAATGTTTTTA
* *
67764 AAACTATATA-TATATAGT-TTTCAAAAATG-ATTTA
1 AAACTATATATTATATA-TATTTTAAAAATGTTTTTA
* **
67798 AGAA-TAT-TA-TATA-AGATTCCAAAATATGTTTTTA
1 A-AACTATATATTATATATATTTTAAAA-ATGTTTTTA
*
67832 AAACTATATATTATATAATTTTTTAAAAATGTTTTTTTTTTAA
1 AAACTATATATTATAT-ATATTTTAAAAATG-----TTTTT-A
* * *
67875 AAACTATATATTATATATATTTTCAAAATGATTTCA
1 AAACTATATATTATATATATTTTAAAAATGTTTTTA
* *
67911 AAACTATATATTATATATATTTT-CAAATGCATTTTCAA
1 AAACTATATATTATATATATTTTAAAAATG--TTTT-TA
* * *
67949 AAACTATACATTATATATGTTTTCAAAAT-TTTTTAAAA
1 AAACTATATATTATATATATTTTAAAAATGTTTTT---A
* ** *
67987 AAACTATATACTATATATATTTTCGAAATGTTTTTG
1 AAACTATATATTATATATATTTTAAAAATGTTTTTA
*
68023 AAACTATATAGTATATATATTTTAAAAA
1 AAACTATATATTATATATATTTTAAAAA
68051 CATTTTCAAA
Statistics
Matches: 255, Mismatches: 37, Indels: 53
0.74 0.11 0.15
Matches are distributed among these distances:
32 23 0.09
33 15 0.06
34 29 0.11
35 24 0.09
36 57 0.22
37 9 0.04
38 55 0.22
39 9 0.04
42 17 0.07
43 17 0.07
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (36 bp):
AAACTATATATTATATATATTTTAAAAATGTTTTTA
Found at i:67914 original size:36 final size:36
Alignment explanation
Indices: 67874--68071 Score: 195
Period size: 36 Copynumber: 5.4 Consensus size: 36
67864 TTTTTTTTTA
67874 AAAACTATATATTATATATATTTTCAAAATGATTTC
1 AAAACTATATATTATATATATTTTCAAAATGATTTC
67910 AAAACTATATATTATATATATTTTC-AAATGCATTTTC
1 AAAACTATATATTATATATATTTTCAAAATG-A-TTTC
* * ** *
67947 AAAAACTATACATTATATATGTTTTCAAAATTTTTTAAA
1 -AAAACTATATATTATATATATTTTCAAAATGATTT--C
* * * *
67986 AAAACTATATACTATATATATTTTCGAAATGTTTTT
1 AAAACTATATATTATATATATTTTCAAAATGATTTC
* * **
68022 GAAACTATATAGTATATATATTTT-AAAAACATTTTC
1 AAAACTATATATTATATATATTTTCAAAATGA-TTTC
*
68058 AAAAAT-TATATTAT
1 AAAACTATATATTAT
68072 GTTGCTATAA
Statistics
Matches: 134, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
35 15 0.11
36 55 0.41
37 7 0.05
38 53 0.40
39 4 0.03
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (36 bp):
AAAACTATATATTATATATATTTTCAAAATGATTTC
Found at i:67953 original size:74 final size:72
Alignment explanation
Indices: 67869--68071 Score: 223
Period size: 74 Copynumber: 2.8 Consensus size: 72
67859 AATGTTTTTT
*
67869 TTTTAAAAACTATATATTATATATATTTTCAAAATGATTTCAAAACTATATATTATATATATTTT
1 TTTTAAAAACTATATATTATATATATTTTCAAAATCATTTCAAAACTATATATTATATATATTTT
67934 C-AAATG
66 CGAAATG
* * ** * *
67940 CATTTTCAAAAACTATACATTATATATGTTTTCAAAATTTTTTAAAAAAACTATATACTATATAT
1 --TTTT-AAAAACTATATATTATATATATTTTCAAAATCATTT--CAAAACTATATATTATATAT
68005 ATTTTCGAAATG
61 ATTTTCGAAATG
** * * *
68017 TTTTTGAAACTATATAGTATATATATTTT-AAAAACATTTTCAAAAAT-TATATTAT
1 TTTTAAAAACTATATATTATATATATTTTCAAAATCA-TTTCAAAACTATATATTAT
68072 GTTGCTATAA
Statistics
Matches: 108, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
71 7 0.06
72 5 0.05
73 8 0.07
74 55 0.51
75 4 0.04
76 24 0.22
77 5 0.05
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.45
Consensus pattern (72 bp):
TTTTAAAAACTATATATTATATATATTTTCAAAATCATTTCAAAACTATATATTATATATATTTT
CGAAATG
Found at i:69028 original size:6 final size:6
Alignment explanation
Indices: 69017--69055 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
69007 GATTGAATTA
*
69017 TTTGTT TTTGTT TTTGCT TTTGTT TTTGTT TTTGTT TTT
1 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTT
69056 TGAATATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (6 bp):
TTTGTT
Found at i:74954 original size:21 final size:20
Alignment explanation
Indices: 74868--75025 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
74858 AAATGACCAA
**
74868 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
74887 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
74907 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
74927 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
74948 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
74969 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
74989 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
75010 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
75026 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:75054 original size:20 final size:20
Alignment explanation
Indices: 74992--75221 Score: 223
Period size: 20 Copynumber: 11.5 Consensus size: 20
74982 CGATTTTCCA
* ** *
74992 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
75012 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
75032 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
75052 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
75072 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
75092 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
75112 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
75132 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
75152 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
* *
75172 AAATCGCAATG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
75192 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
75212 AAATCACAAC
1 AAATCGCAAC
75222 ACTGAAATTT
Statistics
Matches: 174, Mismatches: 30, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
19 2 0.01
20 170 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:75939 original size:24 final size:24
Alignment explanation
Indices: 75900--75946 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
75890 AAATTTGGTC
75900 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
75924 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
75947 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:76137 original size:12 final size:12
Alignment explanation
Indices: 76120--76144 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76110 ATATAATCCT
76120 GAAGAAGAAAAA
1 GAAGAAGAAAAA
76132 GAAGAAGAAAAA
1 GAAGAAGAAAAA
76144 G
1 G
76145 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:78476 original size:33 final size:33
Alignment explanation
Indices: 78425--78691 Score: 214
Period size: 33 Copynumber: 7.9 Consensus size: 33
78415 CGGAAATTAC
*
78425 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAAC-ATGAAAATCGCAATGCGAAATGAA
*
78458 AATCCCAACATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACATGAAAATCGCAATGC-GAAATGAA
*
78492 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAAC-ATGAAAATCGCAATGCGAAATGAA
78525 AATCGC-A-ATGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACATGA-A-AATCGCAATGCGAAATGAA
* * *
78558 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-C
1 AATCGCAA--C---ATGAAAATCGCAATGCGA-AAT-GAA
* * *
78597 AAT-GCGAA-ATGAAAATCGCAACGAGAGAATCG-C
1 AATCGC-AACATGAAAATCGCAATGCGA-AAT-GAA
78630 AAT-GCGAA-ATGAAAATCGCAATGCGAAATGAA
1 AATCGC-AACATGAAAATCGCAATGCGAAATGAA
*
78662 AATCGCAACGA-GAGAATCGCAATGCGAAAT
1 AATCGCAAC-ATGAAAATCGCAATGCGAAAT
78692 TATAAACGCA
Statistics
Matches: 202, Mismatches: 12, Indels: 40
0.80 0.05 0.16
Matches are distributed among these distances:
30 1 0.00
31 3 0.01
32 10 0.05
33 129 0.64
34 31 0.15
35 1 0.00
38 13 0.06
39 9 0.04
40 5 0.02
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (33 bp):
AATCGCAACATGAAAATCGCAATGCGAAATGAA
Found at i:78514 original size:67 final size:67
Alignment explanation
Indices: 78406--78565 Score: 236
Period size: 67 Copynumber: 2.4 Consensus size: 67
78396 GCATTTGACT
** * *
78406 ATCGCAACACGGAAATTACAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAACATGA
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCC-A-ATGA
78471 -A-A
64 GAGA
*
78473 ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGAGA
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAATGAGA
78538 GA
66 GA
78540 ATCGCAATGC-GAAATGAAAATCGCAA
1 ATCGCAATGCGGAAATGAAAATCGCAA
78566 TGCGAAATGA
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
65 4 0.05
66 18 0.21
67 64 0.74
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.14
Consensus pattern (67 bp):
ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAATGAGA
GA
Found at i:78670 original size:52 final size:53
Alignment explanation
Indices: 78434--78691 Score: 256
Period size: 52 Copynumber: 5.0 Consensus size: 53
78424 CAATCGCAAC
*
78434 GAGAGAATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAAT
1 GAGAGAATCGCAATGCGAAATGAAAATCGCAACGA-G-AAATCGCAATGC-GAAAT
* * * * *
78489 GA-A-AATCGCAA--CG--A-GAGAATCGCAATGCGAAAT-GAAAAT-CGCAAT
1 GAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAATCG-CAATGCGAAAT
* * * * *
78534 GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT-GAAAAT-CGCAAC
1 GAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAATCG-CAATGCGAAAT
78586 GAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
1 GAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGA-AATCGCAATGCGAAAT
78640 GA-A-AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
1 GAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGA-AATCGCAATGCGAAAT
78692 TATAAACGCA
Statistics
Matches: 178, Mismatches: 13, Indels: 27
0.82 0.06 0.12
Matches are distributed among these distances:
45 6 0.03
46 3 0.02
47 15 0.08
48 10 0.06
49 3 0.02
51 3 0.02
52 113 0.63
53 15 0.08
54 8 0.04
55 2 0.01
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (53 bp):
GAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAATCGCAATGCGAAAT
Found at i:78721 original size:85 final size:85
Alignment explanation
Indices: 78467--78691 Score: 432
Period size: 85 Copynumber: 2.6 Consensus size: 85
78457 AAATCCCAAC
78467 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
78532 ATGAGAGAATCGCAATGCGAA
65 ATGAGAGAATCGCAATGCGAA
78553 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
*
78618 CGAGAGAATCGCAATGCGAA
66 TGAGAGAATCGCAATGCGAA
78638 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
78692 TATAAACGCA
Statistics
Matches: 138, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
85 122 0.88
86 16 0.12
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.14
Consensus pattern (85 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
TGAGAGAATCGCAATGCGAA
Found at i:78810 original size:52 final size:53
Alignment explanation
Indices: 78698--78813 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
78688 AAATTATAAA
78698 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
78751 CGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
78803 CGCATTGCGAT
1 CGCATTGCGAT
78814 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
Found at i:78821 original size:19 final size:19
Alignment explanation
Indices: 78716--78813 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
78706 GATTCTCTCG
78716 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
78736 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
78755 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
78769 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
78788 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
78807 TTGCGAT
1 TTGCGAT
78814 AGTCATTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:78939 original size:14 final size:14
Alignment explanation
Indices: 78920--78956 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
78910 CATCAATTAC
78920 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
78934 ACAAATCATCTTTT
1 ACAAATCAACTTTT
78948 ACAAATCAA
1 ACAAATCAA
78957 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:80954 original size:14 final size:14
Alignment explanation
Indices: 80935--80991 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
80925 GCGAAATGAA
*
80935 AATCGCAACGACAG
1 AATCGCAACGAAAG
80949 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
80966 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
80982 AATCGCAACG
1 AATCGCAACG
80992 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:80962 original size:33 final size:33
Alignment explanation
Indices: 80916--81008 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
80906 GCGAAACCAA
*
80916 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
80949 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
80982 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
81009 TGCAATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:80973 original size:19 final size:19
Alignment explanation
Indices: 80879--81008 Score: 127
Period size: 19 Copynumber: 7.3 Consensus size: 19
80869 TAGTTTACTT
* *
80879 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
80899 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
80918 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
80937 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
80951 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
80970 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
80984 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
81003 TCGCAA
1 TCGCAA
81009 TGCAATTTTG
Statistics
Matches: 93, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 43 0.46
20 12 0.13
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:81057 original size:33 final size:33
Alignment explanation
Indices: 81020--81100 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
81010 GCAATTTTGG
81020 TTTCGCGTTGCGA-TCTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTC-TGTCGTTGCGATTTTCA
*
81053 TTTCGCATTGCGATTCTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTGTCGTTGCGATTTTCA
81086 TTTCGCGTTGCGATT
1 TTTCGCGTTGCGATT
81101 TTGGTTTCGC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
33 43 0.96
34 2 0.04
ACGTcount: A:0.10, C:0.21, G:0.23, T:0.46
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTGTCGTTGCGATTTTCA
Found at i:81065 original size:19 final size:19
Alignment explanation
Indices: 81039--81137 Score: 100
Period size: 19 Copynumber: 5.4 Consensus size: 19
81029 GCGATCTTGT
81039 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* *
81058 CATTGCGA--TTC-TGT--
1 CGTTGCGATTTTCATTTCG
81072 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
**
81091 CGTTGCGATTTTGGTTTCG
1 CGTTGCGATTTTCATTTCG
*
81110 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
81130 TGTTGCGA
1 CGTTGCGA
81138 AAGTAAACTA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
14 7 0.11
16 5 0.08
17 5 0.08
19 36 0.55
20 12 0.18
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:81301 original size:93 final size:93
Alignment explanation
Indices: 81185--81467 Score: 550
Period size: 93 Copynumber: 3.1 Consensus size: 93
81175 ATGGATTGCA
81185 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
81249 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
81277 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
81342 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
81370 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
81435 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
81463 TTACT
1 TTACT
81468 AAGCAATCTA
Statistics
Matches: 189, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
92 4 0.02
93 185 0.98
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:83189 original size:14 final size:14
Alignment explanation
Indices: 83170--83259 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
83160 TTGAAATGAA
83170 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
83184 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
83203 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
83217 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
83236 AATCGCAACGAGAG
1 AATCGCAACGAGAG
83250 AATCGCAACG
1 AATCGCAACG
83260 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:83207 original size:33 final size:33
Alignment explanation
Indices: 83162--83276 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
83152 TCTTTTAGTT
83162 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
83195 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
83228 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
83261 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
83277 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:83208 original size:19 final size:19
Alignment explanation
Indices: 83184--83281 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
83174 GCAACGAGAG
*
83184 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
83203 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
83217 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
83236 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
83250 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
83269 AATCGCAATGCGA
1 AATCGCAACGCGA
83282 TTTTGGTTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
14 20 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 32 0.50
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:83312 original size:14 final size:14
Alignment explanation
Indices: 83293--83349 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
83283 TTTGGTTTCG
83293 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
83307 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
83326 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
83340 CGTTGCGATT
1 CGTTGCGATT
83350 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:83325 original size:33 final size:33
Alignment explanation
Indices: 83277--83357 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
83267 AAAATCGCAA
**
83277 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
83310 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
83343 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
83358 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:83360 original size:21 final size:21
Alignment explanation
Indices: 83334--83409 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
83324 CGCGTTGCGA
83334 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
83355 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
83375 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
83396 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
83410 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:83390 original size:41 final size:41
Alignment explanation
Indices: 83333--83410 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
83323 TCGCGTTGCG
*
83333 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
83374 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
83411 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:83531 original size:33 final size:33
Alignment explanation
Indices: 83489--83559 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
83479 AATACTAACT
*
83489 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
83522 TGAAAATCGCAACGACAGAATTGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
83555 TGAAA
1 TGAAA
83560 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.17, G:0.23, T:0.13
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:83967 original size:20 final size:20
Alignment explanation
Indices: 83942--84135 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
83932 CTTTAAATAT
83942 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
83962 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
83984 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
84003 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
84023 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
84043 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
84063 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
84083 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
84103 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
84123 CGCGTTGCGATTT
1 CGCGTTGCGATTT
84136 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:84129 original size:60 final size:60
Alignment explanation
Indices: 83942--84135 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
83932 CTTTAAATAT
**
83942 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
84003 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
84063 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
84123 CGCGTTGCGATTT
1 CGCGTTGCGATTT
84136 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:84152 original size:21 final size:21
Alignment explanation
Indices: 84122--84204 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
84112 ATTTTCATAT
*
84122 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
84143 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
84164 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
84185 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
84205 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:84195 original size:42 final size:43
Alignment explanation
Indices: 84102--84200 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
84092 ATTTATGTGT
* *
84102 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
84143 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
84185 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
84201 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:86319 original size:38 final size:38
Alignment explanation
Indices: 86277--86408 Score: 107
Period size: 38 Copynumber: 3.5 Consensus size: 38
86267 TTACATGTTG
86277 AATATTATAATGTTATGGGCCATATGTTCATCTGATAA
1 AATATTATAATGTTATGGGCCATATGTTCATCTGATAA
* **
86315 AATA-T-T-ATG-TACGGGCCCTATATGTT--TGCATG-TTG
1 AATATTATAATGTTATGGG-CC-ATATGTTCAT-C-TGATAA
* * *
86350 AATATTGTAATGCTATGGACCATATGTTCATCTGATAA
1 AATATTATAATGTTATGGGCCATATGTTCATCTGATAA
86388 AATATTATGTAATGTTATGGG
1 AATATTA--TAATGTTATGGG
86409 TCCTACTATG
Statistics
Matches: 71, Mismatches: 10, Indels: 24
0.68 0.10 0.23
Matches are distributed among these distances:
34 6 0.08
35 11 0.15
36 11 0.15
37 11 0.15
38 17 0.24
39 5 0.07
40 10 0.14
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (38 bp):
AATATTATAATGTTATGGGCCATATGTTCATCTGATAA
Found at i:86353 original size:73 final size:73
Alignment explanation
Indices: 86263--86398 Score: 236
Period size: 73 Copynumber: 1.9 Consensus size: 73
86253 CAAGCACTAC
* *
86263 ATGTTTACATGTTGAATATTATAATGTTATGGGCCATATGTTCATCTGATAAAATATTATGTACG
1 ATGTTTACATGTTGAATATTATAATGCTATGGACCATATGTTCATCTGATAAAATATTATGTACG
86328 GGCCCTAT
66 GGCCCTAT
* *
86336 ATGTTTGCATGTTGAATATTGTAATGCTATGGACCATATGTTCATCTGATAAAATATTATGTA
1 ATGTTTACATGTTGAATATTATAATGCTATGGACCATATGTTCATCTGATAAAATATTATGTA
86399 ATGTTATGGG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 59 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (73 bp):
ATGTTTACATGTTGAATATTATAATGCTATGGACCATATGTTCATCTGATAAAATATTATGTACG
GGCCCTAT
Found at i:88855 original size:138 final size:137
Alignment explanation
Indices: 88607--88888 Score: 361
Period size: 138 Copynumber: 2.1 Consensus size: 137
88597 ACCGAAGTGC
* * * *
88607 CGAAATGGAAATTCACAAACTCATTTTGAATTCCATGGATGCACACATAGTACCGAAAGTACATA
1 CGAAATGGAAATTAACAAACTAATTATGAATACCATGGATGCACACATAGTACCGAAAGTACATA
* * ** *
88672 TAGTACTGATACGAAAATTCACCATTATGCATTAAACAAAATCGATCTATAACTTTTATACATAA
66 TAGTACTGATACGAAAATGCACCATTATGCATTAAACAAAATCGATCGATAACCATTATACACAA
88737 TTGTATAT
131 TT-TATAT
* * * *
88745 CGAAATGGTAATTAACAAACTAATTATGAATACCAT-GATTC-CACATTTAGTGCCGAAATTACA
1 CGAAATGGAAATTAACAAACTAATTATGAATACCATGGATGCACACA--TAGTACCGAAAGTACA
* * * *
88808 TATAGTACTGATACGAAAATGCATCGTTATGCATTACACAAAATCGATCGATAACCATTATATAC
64 TATAGTACTGATACGAAAATGCACCATTATGCATTAAACAAAATCGATCGATAACCATTATACAC
*
88873 AATTTATGT
129 AATTTATAT
88882 CGAAATG
1 CGAAATG
88889 AACCTATGAT
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
136 4 0.03
137 15 0.12
138 105 0.85
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.30
Consensus pattern (137 bp):
CGAAATGGAAATTAACAAACTAATTATGAATACCATGGATGCACACATAGTACCGAAAGTACATA
TAGTACTGATACGAAAATGCACCATTATGCATTAAACAAAATCGATCGATAACCATTATACACAA
TTTATAT
Found at i:93013 original size:25 final size:25
Alignment explanation
Indices: 92979--93029 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
92969 TTTCTGTCAC
92979 GCCTGTTAACGATTGTTAACATCAA
1 GCCTGTTAACGATTGTTAACATCAA
*
93004 GCCTGTTAACGGTTGTTAACATCAA
1 GCCTGTTAACGATTGTTAACATCAA
93029 G
1 G
93030 TCACCAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (25 bp):
GCCTGTTAACGATTGTTAACATCAA
Found at i:93898 original size:3 final size:3
Alignment explanation
Indices: 93892--93923 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
93882 ATCAGAAGAA
93892 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
93924 ATAAAGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:95333 original size:38 final size:37
Alignment explanation
Indices: 95215--95506 Score: 208
Period size: 38 Copynumber: 7.7 Consensus size: 37
95205 TAAAAAATCA
* *
95215 TTTTT-AAAATTATATAT-TATATATTTTCAAATCAT
1 TTTTTAAAAACTATATATATATATATTTTCAAAACAT
*
95250 TGTTTTTAAAAC--TATATA-ATATATTTTCAAAA-AT
1 T-TTTTAAAAACTATATATATATATATTTTCAAAACAT
** *
95284 ATTTTCCAAAACTATATACTATATATATTTTTAAAACAT
1 -TTTTTAAAAACTATATA-TATATATATTTTCAAAACAT
*
95323 TTTTTAAAAACTATATATTATATATATTTTCAAAATA-
1 TTTTTAAAAACTATATA-TATATATATTTTCAAAACAT
* * *
95360 TTTTTGAAAATTATATTATATATATATGTTTTAAAA-ATT
1 TTTTTAAAAACTATA-TATATATATAT-TTTCAAAACA-T
* *
95399 TTTTTAAAAACTATATGTTATATATGTTTTCAAAACTAT
1 TTTTTAAAAACTATAT-ATATATATATTTTCAAAAC-AT
* *
95438 ATATATATATATATATA-TATATATATATATATATTCAAAACTAT
1 -T-T-T-T-TA-A-AAACTATATATATATATATTTTCAAAAC-AT
* * *
95482 ATTTTATATA-TATATATATATATAT
1 TTTTTAAAAACTATATATATATATAT
95507 ATATATATAA
Statistics
Matches: 210, Mismatches: 24, Indels: 44
0.76 0.09 0.16
Matches are distributed among these distances:
34 10 0.05
35 20 0.10
36 8 0.04
37 47 0.22
38 62 0.30
39 26 0.12
40 3 0.01
41 2 0.01
42 2 0.01
43 1 0.00
44 21 0.10
45 6 0.03
46 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.49
Consensus pattern (37 bp):
TTTTTAAAAACTATATATATATATATTTTCAAAACAT
Found at i:95402 original size:76 final size:73
Alignment explanation
Indices: 95208--95463 Score: 265
Period size: 76 Copynumber: 3.4 Consensus size: 73
95198 ATTAATATAA
* *
95208 AAAATCATTTTTAAAATTATATAT-TATATATTTTCAAATCATTGTTTTT-AAAAC--TATA-TA
1 AAAAT-ATTTTTAAAATTATATATATATATATTTTTAAA-AATT-TTTTTAAAAACTATATATTA
95268 -ATATATTTTC
63 TATATATTTTC
* *
95278 AAAAATATTTTCCAAAACTATATACTATATATATTTTTAAAACA-TTTTTTAAAAACTATATATT
1 -AAAATATTTT-TAAAATTATATA-TATATATATTTTTAAAA-ATTTTTTTAAAAACTATATATT
95342 ATATATATTTTC
62 ATATATATTTTC
*
95354 AAAATATTTTTGAAAATTATATTATATATATATGTTTTAAAAATTTTTTTAAAAACTATATGTTA
1 AAAATATTTTT-AAAATTATA-TATATATATAT-TTTTAAAAATTTTTTTAAAAACTATATATTA
*
95419 TATATGTTTTC
63 TATATATTTTC
* * *
95430 AAAACTATATATATATATATATATATATATATAT
1 AAAA-TATTTTTA-AAAT-TATATATATATATAT
95464 ATATATATTC
Statistics
Matches: 158, Mismatches: 11, Indels: 26
0.81 0.06 0.13
Matches are distributed among these distances:
70 5 0.03
71 20 0.13
72 7 0.04
73 14 0.09
74 4 0.03
75 30 0.19
76 55 0.35
77 19 0.12
78 4 0.03
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (73 bp):
AAAATATTTTTAAAATTATATATATATATATTTTTAAAAATTTTTTTAAAAACTATATATTATAT
ATATTTTC
Found at i:95434 original size:25 final size:26
Alignment explanation
Indices: 95400--95449 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
95390 TTAAAAATTT
*
95400 TTTTAAAAACTATATGT-TATATATG
1 TTTTAAAAACTATATATATATATATG
*
95425 TTTTCAAAACTATATATATATATAT
1 TTTTAAAAACTATATATATATATAT
95450 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (26 bp):
TTTTAAAAACTATATATATATATATG
Found at i:95440 original size:2 final size:2
Alignment explanation
Indices: 95435--95574 Score: 168
Period size: 2 Copynumber: 71.5 Consensus size: 2
95425 TTTTCAAAAC
95435 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TCA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* *
95476 AA CTA TA T- TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
95517 TA TA T- TCA -A AA CTA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA T-A TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95558 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
95575 TCAAAATGTT
Statistics
Matches: 124, Mismatches: 3, Indels: 22
0.83 0.02 0.15
Matches are distributed among these distances:
1 7 0.06
2 115 0.93
3 2 0.02
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:95950 original size:2 final size:2
Alignment explanation
Indices: 95945--96033 Score: 91
Period size: 2 Copynumber: 47.0 Consensus size: 2
95935 TCTAGTACAT
95945 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
95986 TA TA TA T- TA -A AA AA TT TA -A CTA -A TA -A TA TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
96024 TA TA TA TA TA
1 TA TA TA TA TA
96034 AAGAATTTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
1 6 0.08
2 68 0.91
3 1 0.01
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:97738 original size:23 final size:23
Alignment explanation
Indices: 97703--97765 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
97693 GAGTCGAGGG
*
97703 TTCTACGCAGTCCTTCGGAACAA
1 TTCTACGCGGTCCTTCGGAACAA
* * *
97726 TTCTACGTGGTCCTTCGGGACAT
1 TTCTACGCGGTCCTTCGGAACAA
*
97749 TTCTATGCGGTCCTTCG
1 TTCTACGCGGTCCTTCG
97766 AGACAATATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.16, C:0.29, G:0.22, T:0.33
Consensus pattern (23 bp):
TTCTACGCGGTCCTTCGGAACAA
Found at i:97778 original size:23 final size:23
Alignment explanation
Indices: 97734--97778 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97724 AATTCTACGT
* *
97734 GGTCCTTCGGGACATTTCTATGC
1 GGTCCTTCGAGACATATCTATGC
97757 GGTCCTTCGAGACAATAT-TATG
1 GGTCCTTCGAGAC-ATATCTATG
97779 TGGGATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (23 bp):
GGTCCTTCGAGACATATCTATGC
Found at i:97827 original size:24 final size:24
Alignment explanation
Indices: 97795--97883 Score: 142
Period size: 24 Copynumber: 3.7 Consensus size: 24
97785 ATTTATATGT
*
97795 GGCACTTCGATGTAATTCCTACAC
1 GGCACTTCGATGCAATTCCTACAC
* *
97819 GGCACTTCGGTGCAATTCCTACGC
1 GGCACTTCGATGCAATTCCTACAC
97843 GGCACTTCGATGCAATTCCTACAC
1 GGCACTTCGATGCAATTCCTACAC
*
97867 GGCACTTCGGTGCAATT
1 GGCACTTCGATGCAATT
97884 TATACGAGTT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (24 bp):
GGCACTTCGATGCAATTCCTACAC
Found at i:108309 original size:14 final size:14
Alignment explanation
Indices: 108290--108319 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
108280 TAACTTGAAT
108290 TCCAAAATTTCAAC
1 TCCAAAATTTCAAC
108304 TCCAAAATTTCAAC
1 TCCAAAATTTCAAC
108318 TC
1 TC
108320 GACTCGAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (14 bp):
TCCAAAATTTCAAC
Found at i:109710 original size:2 final size:2
Alignment explanation
Indices: 109703--109738 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
109693 GCATGTGGTA
109703 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
109739 GTAATATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:109924 original size:14 final size:14
Alignment explanation
Indices: 109901--109931 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
109891 AATAATAAAT
109901 AAATAAATATATAA
1 AAATAAATATATAA
*
109915 AAATAGATATATAA
1 AAATAAATATATAA
109929 AAA
1 AAA
109932 ATATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (14 bp):
AAATAAATATATAA
Found at i:109933 original size:25 final size:25
Alignment explanation
Indices: 109886--109936 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
109876 AAAATCCAAA
109886 ATAAAAATAATAAATAAATAAATAT
1 ATAAAAATAATAAATAAATAAATAT
*
109911 ATAAAAATAGATATATAAA-AAATAT
1 ATAAAAATA-ATAAATAAATAAATAT
109936 A
1 A
109937 ATAATAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (25 bp):
ATAAAAATAATAAATAAATAAATAT
Found at i:111389 original size:84 final size:84
Alignment explanation
Indices: 111221--111812 Score: 762
Period size: 84 Copynumber: 7.0 Consensus size: 84
111211 CTGTAAATTT
* * * * *
111221 TGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCA
1 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCT-A
* * *
111286 -ACTTAAGATATGCTGCAAA
65 GCCTTGAGTTATGCTGCAAA
*** * * *
111305 TGACACGCCTTGGAGCTGAGTGTAGTCGAATTTGAAGGAT-TTTGGTTGGCAGATAGCCCTTCTA
1 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG-TCTTTGGTTGGCAGATAGCCCTTCTA
* *
111369 GCCTTGAGTTATGTTACAAA
65 GCCTTGAGTTATGCTGCAAA
111389 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTCTGG-TGGCAGATAGCCCTTCTA
1 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT-TGGTTGGCAGATAGCCCTTCTA
111453 GCCTTGAGTTATGCTGCAAA
65 GCCTTGAGTTATGCTGCAAA
** * * *
111473 TGATGTGCCTTGGAGCTGAGCGTAGTTAAACTCGAAGGTATTTGGTTAGCAGATAACCCTTCTAG
1 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTAG
* *
111538 CCTTGAGTTCTACTGCAAA
66 CCTTGAGTTATGCTGCAAA
* * * * *
111557 TGATTTGTCTTGGAACTGAGCGTTAATCAAACTCGAAGGTCTTTTGG-TGGCAGATAGCCCTTCT
1 TGATGTGCCTTGGAGCTGAGCG-TAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAGCCCTTCT
111621 AGCCTTGAGTTATGCTGCAAA
64 AGCCTTGAGTTATGCTGCAAA
* * *
111642 TGATGTGCCTTGGAGCTGAGCATAGTCGAACTCGAAGGTCTTTTGG-TGGCATATAACCCTTCTA
1 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAGCCCTTCTA
111706 GCCTTGAGTTATGCTGCAAA
65 GCCTTGAGTTATGCTGCAAA
* * * * *
111726 TGATGTGTCTTGGAGCTAAGCGTAGTAGAACTCGAAGGTCTTTGGTTGGCAGATAACCTTTCTAG
1 TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTAG
*
111791 CCCTGAGTTATGCTGCAAA
66 CCTTGAGTTATGCTGCAAA
111810 TGA
1 TGA
111813 ACACGATATC
Statistics
Matches: 448, Mismatches: 52, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
83 10 0.02
84 362 0.81
85 71 0.16
86 5 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (84 bp):
TGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTAG
CCTTGAGTTATGCTGCAAA
Found at i:111680 original size:253 final size:254
Alignment explanation
Indices: 111344--111812 Score: 789
Period size: 253 Copynumber: 1.9 Consensus size: 254
111334 ATTTGAAGGA
*
111344 TTTTGGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGTTACAAATGATGTGCCTTGGAGCTGAG
1 TTTTGGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCTTGGAGCTGAG
* *
111409 CGTAGTCGAACTCGAAGGTCTTCTGGTGGCAGATAGCCCTTCTAGCCTTGAGTTATGCTGCAAAT
66 CATAGTCGAACTCGAAGGTCTTCTGGTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAAT
*
111474 GATGTGCCTTGGAGCTGAGCGTAGTTA-AACTCGAAGGTATTTGGTTAGCAGATAACCCTTCTAG
131 GATGTGCCTTGGAGCTAAGCGTAG-TAGAACTCGAAGGTATTTGGTTAGCAGATAACCCTTCTAG
* *
111538 CCTTGAGTTCTACTGCAAATGATTTGTCTTGGAACTGAGCGTTAATCAAACTCGAAGGTC
195 CCCTGAGTTATACTGCAAATGATTTGTCTTGGAACTGAGCGTTAATCAAACTCGAAGGTC
*
111598 TTTTGG-TGGCAGATAGCCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAG
1 TTTTGGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCTTGGAGCTGAG
* *
111662 CATAGTCGAACTCGAAGGTCTTTTGGTGGCATATAACCCTTCTAGCCTTGAGTTATGCTGCAAAT
66 CATAGTCGAACTCGAAGGTCTTCTGGTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAAT
* * * *
111727 GATGTGTCTTGGAGCTAAGCGTAGTAGAACTCGAAGGTCTTTGGTTGGCAGATAACCTTTCTAGC
131 GATGTGCCTTGGAGCTAAGCGTAGTAGAACTCGAAGGTATTTGGTTAGCAGATAACCCTTCTAGC
*
111792 CCTGAGTTATGCTGCAAATGA
196 CCTGAGTTATACTGCAAATGA
111813 ACACGATATC
Statistics
Matches: 200, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
252 2 0.01
253 192 0.96
254 6 0.03
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (254 bp):
TTTTGGTTGGCAGATAGCCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCTTGGAGCTGAG
CATAGTCGAACTCGAAGGTCTTCTGGTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAAT
GATGTGCCTTGGAGCTAAGCGTAGTAGAACTCGAAGGTATTTGGTTAGCAGATAACCCTTCTAGC
CCTGAGTTATACTGCAAATGATTTGTCTTGGAACTGAGCGTTAATCAAACTCGAAGGTC
Found at i:113566 original size:95 final size:95
Alignment explanation
Indices: 113362--113622 Score: 317
Period size: 95 Copynumber: 2.7 Consensus size: 95
113352 GGCTAGCTGA
* * * * * *
113362 ATCCATAAATCCGGGGCATTTAACCAATTGCTCTAGAGGGACAATTTAATATCATTGTATAG-AT
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAA-CTCA-AGC-TT-TATTGTAT
* *
113426 ATTATGATCGCCTTTATCAGACTAGCTAAATATT
62 ATTATAATCACCTTTATCAGACTAGCTAAATATT
* *
113460 ATCCATAAAGCCGGGGTGTTCAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTA
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTA
* * *
113525 TAATCACCTTTATCAGGCTAGCTGAATCTT
66 TAATCACCTTTATCAGACTAGCTAAATATT
* * * *
113555 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTTTAGAAGGACACCTCAAGCTTTATTATATATAT
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATAT-T
113620 ATA
65 ATA
113623 TAATATTATA
Statistics
Matches: 142, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
94 4 0.03
95 90 0.63
96 6 0.04
97 2 0.01
98 40 0.28
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (95 bp):
ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTA
TAATCACCTTTATCAGACTAGCTAAATATT
Found at i:114106 original size:21 final size:21
Alignment explanation
Indices: 114080--114125 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
114070 TATCCTGATA
*
114080 AAAAGAAATATGTCAAAGTTC
1 AAAAGAAATATGACAAAGTTC
*
114101 AAAAGAAATATGAGAAAGTTC
1 AAAAGAAATATGACAAAGTTC
114122 AAAA
1 AAAA
114126 AAACAAGTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.20
Consensus pattern (21 bp):
AAAAGAAATATGACAAAGTTC
Found at i:117132 original size:21 final size:20
Alignment explanation
Indices: 117108--117146 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
117098 GTAATCCTTA
*
117108 TATTTGAATAAAATATTAATC
1 TATTTGAA-AAAAAATTAATC
*
117129 TATTTTAAAAAAAATTAA
1 TATTTGAAAAAAAATTAA
117147 AATTACGAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (20 bp):
TATTTGAAAAAAAATTAATC
Found at i:120480 original size:16 final size:16
Alignment explanation
Indices: 120459--120491 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
120449 TGAGAAGCTT
*
120459 ATGGAAAGAAAAAAAA
1 ATGGAAACAAAAAAAA
120475 ATGGAAACAAAAAAAA
1 ATGGAAACAAAAAAAA
120491 A
1 A
120492 ATTAAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.03, G:0.15, T:0.06
Consensus pattern (16 bp):
ATGGAAACAAAAAAAA
Found at i:122565 original size:2 final size:2
Alignment explanation
Indices: 122558--122617 Score: 54
Period size: 2 Copynumber: 30.0 Consensus size: 2
122548 TCGACCGACC
* *
122558 AT AT AT AT AT AT AT AT AT -T ACT TT CAT -T AT -T AT GGT AT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT -AT AT AT AT AT -AT AT AT
122598 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
122618 GTTATATTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
1 3 0.06
2 42 0.88
3 3 0.06
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (2 bp):
AT
Found at i:123722 original size:2 final size:2
Alignment explanation
Indices: 123715--123772 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
123705 TTTATTATTA
123715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123757 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
123773 CTTTTACCTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:123807 original size:23 final size:22
Alignment explanation
Indices: 123766--123837 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 22
123756 TATATATATA
* *
123766 TATATATCTTTTACCTTTTTTAT
1 TATATATCTTTTA-TTTTTTTTT
123789 TATATATCATTTTATTTTTATTTT
1 TATATATC-TTTTATTTTT-TTTT
*
123813 TTTACTAT-TTTTATTTTTTTTT
1 TATA-TATCTTTTATTTTTTTTT
123835 TAT
1 TAT
123838 TATTACTTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
22 6 0.14
23 22 0.52
24 11 0.26
25 3 0.07
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (22 bp):
TATATATCTTTTATTTTTTTTT
Found at i:123809 original size:6 final size:6
Alignment explanation
Indices: 123798--123838 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
123788 TTATATATCA
**
123798 TTTTAT TTTTAT TTTT-T TACTAT TTTTAT TTTT-T TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
123839 ATTACTTGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 8 0.28
6 21 0.72
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:123914 original size:38 final size:41
Alignment explanation
Indices: 123832--123914 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 41
123822 TTTATTTTTT
* * *
123832 TTTTATTATTACTTGTTTTTCTTGTGTTTTATTTATATATA
1 TTTTATTATTACTTGTTTTTCTTGTCTTTTATTTACATACA
*
123873 TTTTATT-TTATTTG-TTTT-TTGTCTTTT-TTTACATAACA
1 TTTTATTATTACTTGTTTTTCTTGTCTTTTATTTACAT-ACA
123911 TTTT
1 TTTT
123915 TGTATAGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
37 6 0.16
38 14 0.38
39 4 0.11
40 6 0.16
41 7 0.19
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (41 bp):
TTTTATTATTACTTGTTTTTCTTGTCTTTTATTTACATACA
Found at i:124009 original size:21 final size:21
Alignment explanation
Indices: 123983--124036 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
123973 ATATATTTAG
*
123983 TTTTTTTTATTTCTATTATTT
1 TTTTTTTTATTTCTACTATTT
*
124004 TTTTTTTGT-TTTTTACTATTT
1 TTTTTTT-TATTTCTACTATTT
* *
124025 ATTTATTTATTT
1 TTTTTTTTATTT
124037 ATTTTTTATC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTTTTTTATTTCTACTATTT
Found at i:124035 original size:12 final size:11
Alignment explanation
Indices: 123976--124045 Score: 54
Period size: 11 Copynumber: 6.3 Consensus size: 11
123966 CCTATATATA
*
123976 TATTTAGTTTT
1 TATTTATTTTT
123987 T-TTTATTTCTAT
1 TATTTATTT-T-T
*
123999 TATTTTTTTTT
1 TATTTATTTTT
* **
124010 TGTTT-TTTAC
1 TATTTATTTTT
124020 TATTTATTTATT
1 TATTTATTT-TT
124032 TATTTATTTTT
1 TATTTATTTTT
124043 TAT
1 TAT
124046 CTTTTTCTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
10 13 0.28
11 15 0.33
12 12 0.26
13 6 0.13
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (11 bp):
TATTTATTTTT
Found at i:124289 original size:6 final size:6
Alignment explanation
Indices: 124278--124464 Score: 84
Period size: 6 Copynumber: 29.5 Consensus size: 6
124268 TGTTCTTTGA
* *
124278 TTTATT TTTATT ATTATT TATTATT TTT-TCT TTGACTT ATTCT-TT TTTATT
1 TTTATT TTTATT TTTATT T-TTATT TTTAT-T TTTA-TT -TT-TATT TTTATT
*
124329 TTT-TT TTTCAATT TTT-TAT TTAATT TTT-TCT GGTTTATT TTTA-T
1 TTTATT TTT--ATT TTTAT-T TTTATT TTTAT-T --TTTATT TTTATT
* *
124373 ATTATT TTTATT TTTATT TTTATTT TTTATT TTGATT TATTA-T TTTATT
1 TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT T-TTATT TTTATT
* * *
124422 ATTATATT ATTT-TG TCTATT TTTATT TGATATT TATTATT TTT
1 -TT-TATT -TTTATT TTTATT TTTATT T-TTATT T-TTATT TTT
124465 CTATCTAACA
Statistics
Matches: 140, Mismatches: 17, Indels: 48
0.68 0.08 0.23
Matches are distributed among these distances:
5 18 0.13
6 71 0.51
7 31 0.22
8 19 0.14
9 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:124335 original size:12 final size:12
Alignment explanation
Indices: 124282--124405 Score: 70
Period size: 13 Copynumber: 9.8 Consensus size: 12
124272 CTTTGATTTA
*
124282 TTTTTATTATTAT
1 TTTTTATT-TTTT
*
124295 TTATTATTTTTT
1 TTTTTATTTTTT
* * *
124307 CTTTGACTTATTCT
1 TTTTTA-TT-TTTT
124321 TTTTTATTTTTT
1 TTTTTATTTTTT
*
124333 TTTTCAATTTTTT
1 TTTT-TATTTTTT
* *
124346 ATTTAATTTTTT
1 TTTTTATTTTTT
*
124358 CTGGTTTA-TTTTT
1 -T-TTTTATTTTTT
* * *
124371 ATATTATTTTTA
1 TTTTTATTTTTT
124383 TTTTTATTTTTAT
1 TTTTTATTTTT-T
124396 TTTTTATTTT
1 TTTTTATTTT
124406 GATTTATTAT
Statistics
Matches: 83, Mismatches: 21, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
11 3 0.04
12 34 0.41
13 36 0.43
14 10 0.12
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTATTTTTT
Found at i:124392 original size:49 final size:46
Alignment explanation
Indices: 124279--124448 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 46
124269 GTTCTTTGAT
* * * * *
124279 TTATTTTTATTATTATTTATTATTTTTTCTTTGACTTATTCTTTT-
1 TTATTTTTATTTTTATTTTTTATTTTTTTTTTGATTTATTATTTTA
*
124324 TTATTTTT-TTTTTCAATTTTTTATTTAATTTTTTCTGGTTTATT-TTTATA
1 TTATTTTTATTTTT--ATTTTTTATTT--TTTTTT-TGATTTATTATTT-TA
124374 TTATTTTTATTTTTA-TTTTTATTTTTTATTTTGATTTATTATTTTA
1 TTATTTTTATTTTTATTTTTTATTTTTT-TTTTGATTTATTATTTTA
*
124420 TTATTATATTATTTTGTCTATTTTTATTT
1 TTATT-T-TTATTTT-TAT-TTTTTATTT
124449 GATATTTATT
Statistics
Matches: 103, Mismatches: 7, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
44 4 0.04
45 8 0.08
46 28 0.27
47 7 0.07
48 24 0.23
49 10 0.10
50 8 0.08
51 14 0.14
ACGTcount: A:0.19, C:0.04, G:0.03, T:0.75
Consensus pattern (46 bp):
TTATTTTTATTTTTATTTTTTATTTTTTTTTTGATTTATTATTTTA
Found at i:124425 original size:11 final size:11
Alignment explanation
Indices: 124367--124432 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 11
124357 TCTGGTTTAT
124367 TTTTA-TATTA
1 TTTTATTATTA
*
124377 TTTTTATTTTTA
1 -TTTTATTATTA
*
124389 TTTTTATTTTTTA
1 -TTTTA-TTATTA
124402 TTTTGATTTATTA
1 TTTT-A-TTATTA
124415 TTTTATTATTA
1 TTTTATTATTA
*
124426 TATTATT
1 TTTTATT
124433 TTGTCTATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
11 17 0.35
12 15 0.31
13 17 0.35
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:124461 original size:20 final size:19
Alignment explanation
Indices: 124363--124464 Score: 79
Period size: 19 Copynumber: 5.4 Consensus size: 19
124353 TTTTTCTGGT
*
124363 TTATTTTTATAT-TATTT-
1 TTATTTTTATTTATATTTA
* *
124380 TTATTTTTATTTTTATTTT
1 TTATTTTTATTTATATTTA
*
124399 TTATTTTGATTTAT-TATT-
1 TTATTTTTATTTATAT-TTA
* *
124417 TTATTATTATATTAT-TTTG
1 TTATTTTTAT-TTATATTTA
124436 TCTATTTTTATTTGATATTTA
1 T-TATTTTTATTT-ATATTTA
124457 TTATTTTT
1 TTATTTTT
124465 CTATCTAACA
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
17 11 0.16
18 16 0.23
19 22 0.31
20 17 0.24
21 4 0.06
ACGTcount: A:0.22, C:0.01, G:0.03, T:0.75
Consensus pattern (19 bp):
TTATTTTTATTTATATTTA
Found at i:125448 original size:19 final size:19
Alignment explanation
Indices: 125424--125487 Score: 128
Period size: 19 Copynumber: 3.4 Consensus size: 19
125414 GCAATTAGTA
125424 CATCGATGCATAAGGAGTG
1 CATCGATGCATAAGGAGTG
125443 CATCGATGCATAAGGAGTG
1 CATCGATGCATAAGGAGTG
125462 CATCGATGCATAAGGAGTG
1 CATCGATGCATAAGGAGTG
125481 CATCGAT
1 CATCGAT
125488 ACACCTACTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (19 bp):
CATCGATGCATAAGGAGTG
Found at i:126001 original size:24 final size:21
Alignment explanation
Indices: 125974--126031 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 21
125964 ATGTGAAATA
125974 ATGAAAGTGATCACATGTGTGTAT
1 ATGAAAGTGAT-ACATGT-T-TAT
125998 ATG-AAGTGAAATACATGTTTAT
1 ATGAAAGTG--ATACATGTTTAT
126020 ATGAAAAGTGAT
1 ATG-AAAGTGAT
126032 GAGAAGATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
22 8 0.27
23 6 0.20
24 14 0.47
25 2 0.07
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (21 bp):
ATGAAAGTGATACATGTTTAT
Found at i:126274 original size:18 final size:19
Alignment explanation
Indices: 126250--126304 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
126240 GGGTCATATA
126250 CAGTGGTCCTTCGGGACAT
1 CAGTGGTCCTTCGGGACAT
* * *
126269 -AGTGGTTCTGC-GAACAAT
1 CAGTGGTCCTTCGGGAC-AT
126287 CAGTGGTCCTTCGGGACA
1 CAGTGGTCCTTCGGGACA
126305 AATATTCAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
17 3 0.11
18 11 0.41
19 10 0.37
20 3 0.11
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (19 bp):
CAGTGGTCCTTCGGGACAT
Found at i:132138 original size:18 final size:18
Alignment explanation
Indices: 132109--132155 Score: 62
Period size: 16 Copynumber: 2.7 Consensus size: 18
132099 TGATAAGAAT
*
132109 TTGAATATTTGAGAATATA
1 TTGAA-ATTTGAGAACATA
132128 TTGAAATTT--GAACATA
1 TTGAAATTTGAGAACATA
132144 TTGAAATTTGAG
1 TTGAAATTTGAG
132156 TATGATTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 15 0.60
18 5 0.20
19 5 0.20
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.40
Consensus pattern (18 bp):
TTGAAATTTGAGAACATA
Found at i:133216 original size:18 final size:17
Alignment explanation
Indices: 133193--133255 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 17
133183 GGATATATAC
133193 AGTGGTCTTTCAGGACAT
1 AGTGGTCTTTC-GGACAT
133211 AGTGGT-TCTTCGGAACAAT
1 AGTGGTCT-TTCGG-AC-AT
*
133230 CAGTGGTCCTTCGGGACAT
1 -AGTGGTCTTTC-GGACAT
133249 AGTGGTC
1 AGTGGTC
133256 ATCCGGGACA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
17 3 0.08
18 18 0.47
19 4 0.11
20 11 0.29
21 2 0.05
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (17 bp):
AGTGGTCTTTCGGACAT
Found at i:133247 original size:38 final size:40
Alignment explanation
Indices: 133171--133254 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 40
133161 GTTCTTAAGG
* * *
133171 AGTGGTTCTTCGGGATATATACAGTGGTCTTTCAGGACAT
1 AGTGGTTCTTCGGAACATATACAGTGGTCCTTCAGGACAT
*
133211 AGTGGTTCTTCGGAACA-AT-CAGTGGTCCTTCGGGACAT
1 AGTGGTTCTTCGGAACATATACAGTGGTCCTTCAGGACAT
133249 AGTGGT
1 AGTGGT
133255 CATCCGGGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 23 0.57
39 2 0.05
40 15 0.38
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (40 bp):
AGTGGTTCTTCGGAACATATACAGTGGTCCTTCAGGACAT
Found at i:133262 original size:18 final size:18
Alignment explanation
Indices: 133231--133265 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
133221 CGGAACAATC
* *
133231 AGTGGTCCTTCGGGACAT
1 AGTGGTCATCCGGGACAT
133249 AGTGGTCATCCGGGACA
1 AGTGGTCATCCGGGACA
133266 AATATTCAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (18 bp):
AGTGGTCATCCGGGACAT
Found at i:138699 original size:86 final size:86
Alignment explanation
Indices: 138479--139258 Score: 889
Period size: 85 Copynumber: 9.2 Consensus size: 86
138469 ATTCAAAAGC
* * * * * *
138479 ATCTGCCAAC-AAATACCTTCGAGTTTGATTACATTCAGCTCAAAGGCACACCAAATTTATAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
*
138543 TAGCTCAAGGCAAGAAGGGCT
66 TAGCTCAAGGCGAGAAGGGCT
* * *
138564 ATCTGTCAA-AAAATACATTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTATAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
* *
138628 TAACTCAAGGCTAGAAGGGCT
66 TAGCTCAAGGCGAGAAGGGCT
* * *
138649 ATTTGTCAACAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAACA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
*
138714 TAGCTCAAGGCGAGAAGGGTT
66 TAGCTCAAGGCGAGAAGGGCT
* * * * * * * *
138735 ATCTGTCAACGAAAGACCTTTGAGTTCGATTACACTCAACTTAAAGGCATATCCAATTCACAGTA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
* * *
138800 TAACTCAAGACGAGAAGGGTT
66 TAGCTCAAGGCGAGAAGGGCT
* * * * * * *
138821 TTCTATCAAC-CAAGACCTTCGAGTTCGATTACACTCAGGTCAAAGGCACA-C-CATTTGCAGTA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
*
138883 TAGCTCAAGGCGAGAAGGGTT
66 TAGCTCAAGGCGAGAAGGGCT
** * * * *
138904 ATCTACCAACAAAATACCTTCGAGTTCGATTACACTCAGCTCAATGGGACATCCAATTTACAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
* * *
138969 TAACTAAAGGCGAGAAGGGTT
66 TAGCTCAAGGCGAGAAGGGCT
* *
138990 ATCTGTCAAC-CAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
139054 TAGCTCAAGGCGAGAAGGGCT
66 TAGCTCAAGGCGAGAAGGGCT
* * * * * *
139075 ATCTGTTAAC-CAAGACCTTTGAGTTTGATTACAATTAGCTCAAAGGCACATCAAATTTACAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
** * *
139139 TAGCTCAAGGAAAGAATGTCT
66 TAGCTCAAGGCGAGAAGGGCT
* * * * * * * *
139160 ATCTGTCAACAAAAGACCTTCGAGTTTGATTACATTCAACTCAGAGGCATATC-CA-GTA-AACA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
*
139222 TAACTCAAGGCGAGAAGGG-T
66 TAGCTCAAGGCGAGAAGGGCT
*
139242 ATATGTCAACAAAAGAC
1 ATCTGTCAACAAAAGAC
139259 GCG
Statistics
Matches: 601, Mismatches: 88, Indels: 15
0.85 0.12 0.02
Matches are distributed among these distances:
82 17 0.03
83 52 0.09
84 38 0.06
85 273 0.45
86 221 0.37
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (86 bp):
ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAGCA
TAGCTCAAGGCGAGAAGGGCT
Found at i:138841 original size:171 final size:171
Alignment explanation
Indices: 138479--139258 Score: 889
Period size: 171 Copynumber: 4.6 Consensus size: 171
138469 ATTCAAAAGC
* * * * * *
138479 ATCTGCCAAC-AAATACCTTCGAGTTTGATTACATTCAGCTCAAAGGCACACCAAATTTATAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-AATTTACAGCA
* * *
138543 TAGCTCAAGGCAAGAAGGGCTATCTGTCAA-AAAATACATTCGAGTTCGATTACACTCAGCTCAA
65 TAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * * *
138607 AGGCACATCAAATTTATAGCATAACTCAAGGCTAGAAGGGCT
130 AGGCACATCAAATTTACAGCATAACTCAAGACGAGAAGGGTT
* * *
138649 ATTTGTCAACAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAAATTTACAACA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-AATTTACAGCA
* * * * *
138714 TAGCTCAAGGCGAGAAGGGTTATCTGTCAACGAAAGACCTTTGAGTTCGATTACACTCAACTTAA
65 TAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * * *
138779 AGGCATATCCAATTCACAGTATAACTCAAGACGAGAAGGGTT
130 AGGCACATCAAATTTACAGCATAACTCAAGACGAGAAGGGTT
* * * * * * *
138821 TTCTATCAAC-CAAGACCTTCGAGTTCGATTACACTCAGGTCAAAGGCACA-CCATTTGCAGTAT
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCAT
* ** * *
138884 AGCTCAAGGCGAGAAGGGTTATCTACCAACAAAATACCTTCGAGTTCGATTACACTCAGCTCAAT
66 AGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
* * * *
138949 GGGACATCCAATTTACAGCATAACTAAAGGCGAGAAGGGTT
131 GGCACATCAAATTTACAGCATAACTCAAGACGAGAAGGGTT
*
138990 ATCTGTCAAC-CAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAGCA
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CAATTTACAGCA
* * * * * *
139054 TAGCTCAAGGCGAGAAGGGCTATCTGTTAAC-CAAGACCTTTGAGTTTGATTACAATTAGCTCAA
65 TAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * *
139118 AGGCACATCAAATTTACAGCATAGCTCAAGGA-AAGAA-TGTCT
130 AGGCACATCAAATTTACAGCATAACTCAA-GACGAGAAGGGT-T
* * * * * * * *
139160 ATCTGTCAACAAAAGACCTTCGAGTTTGATTACATTCAACTCAGAGGCATATCCA-GTA-AACAT
1 ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCAT
* *
139223 AACTCAAGGCGAGAAGGG-TATATGTCAACAAAAGAC
66 AGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGAC
139259 GCG
Statistics
Matches: 518, Mismatches: 84, Indels: 18
0.84 0.14 0.03
Matches are distributed among these distances:
167 9 0.02
168 26 0.05
169 151 0.29
170 77 0.15
171 186 0.36
172 69 0.13
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (171 bp):
ATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAATTTACAGCAT
AGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
GGCACATCAAATTTACAGCATAACTCAAGACGAGAAGGGTT
Done.