Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004303.1 Hibiscus syriacus cultivar Beakdansim tig00009436_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74333

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8005--8115
46
2.4
46
95
0
204
35
1
18
44
1.61
8180--8276
44
2.2
46
79
7
110
41
1
12
45
1.49
11632--11694
28
2.2
30
94
5
112
57
12
0
30
1.36
11636--11701
28
2.4
28
87
10
107
56
12
0
31
1.36
11671--11719
21
2.3
21
85
3
71
53
16
0
30
1.43
14753--14793
18
2.2
20
86
8
59
39
0
9
51
1.35
15683--15721
18
2.2
18
85
0
51
51
30
7
10
1.64
22617--22791
60
2.9
59
77
5
165
31
22
6
39
1.79
24200--24261
4
16.2
4
90
6
94
22
1
0
75
0.88
24941--24965
13
1.9
13
100
0
50
40
0
16
44
1.47
29201--29244
23
1.9
23
85
0
61
25
20
20
34
1.97
29236--29274
17
2.3
17
100
0
78
30
30
15
23
1.95
29202--29253
11
4.6
11
78
4
50
26
23
19
30
1.98
31766--31800
7
5.0
7
100
0
70
14
0
42
42
1.45
31768--31839
14
5.1
14
81
0
63
23
0
27
48
1.51
31765--31834
21
3.3
21
81
0
86
24
0
30
45
1.53
31915--31951
7
5.3
7
93
0
65
13
0
24
62
1.31
31894--31978
7
12.6
7
82
7
61
18
0
32
48
1.49
33488--33545
2
29.0
2
100
0
116
50
0
0
50
1.00
35184--35248
22
2.9
22
88
2
85
27
27
20
24
1.99
35352--35460
19
5.8
19
70
14
57
28
0
12
57
1.42
35328--35536
75
2.8
75
91
3
323
27
0
13
58
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43806--44020
75
2.9
75
85
2
263
28
1
12
57
1.45
53017--53091
35
2.1
35
97
0
141
33
28
29
9
1.88
53174--53239
24
2.8
23
86
4
96
40
19
10
28
1.85
54392--54427
18
2.0
18
88
0
54
30
16
0
52
1.44
55636--55705
18
4.2
18
75
17
87
12
17
50
20
1.78
55640--55700
31
2.0
31
93
0
104
14
16
49
19
1.80
56831--56876
22
2.1
22
91
0
74
41
2
6
50
1.40
56936--57007
6
12.2
6
88
2
110
61
0
2
36
1.11
58259--58428
90
1.9
88
95
2
304
44
6
11
38
1.66
65119--65291
90
1.9
89
94
1
301
44
5
10
39
1.62
70229--70681
54
8.5
54
79
7
478
35
19
16
28
1.94
70230--70681
108
4.2
108
84
3
558
35
19
16
27
1.94
70528--70602
27
2.8
27
67
6
62
36
13
14
36
1.85

Tables:   1

The End!