genome.fa.s4305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004305.1 Hibiscus syriacus cultivar Beakdansim tig00009441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115412

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564--623	30	2.0	30	93	3	104	48	8	23	20	1.76
1413--1477	23	3.0	22	79	16	73	44	13	6	35	1.69
14051--14374	101	3.2	102	92	3	532	26	13	23	36	1.92
14373--14450	23	3.3	23	81	1	93	24	20	23	32	1.98
19100--19420	103	3.1	103	96	0	579	26	13	23	37	1.92
19427--19504	23	3.3	23	81	1	93	24	20	23	32	1.98
22075--22126	21	2.5	21	90	0	86	25	17	17	40	1.90
23545--23787	82	3.0	82	91	1	398	35	7	5	51	1.55
23762--23804	14	2.9	14	77	12	50	41	4	0	53	1.21
23758--24330	29	18.8	31	67	22	126	38	6	2	52	1.42
23782--24283	7	76.3	6	70	20	105	37	6	2	53	1.42
23784--24285	22	24.0	22	68	23	147	37	6	2	53	1.42
23774--24300	37	14.6	34	69	22	184	37	6	3	53	1.42
23857--23952	50	1.9	49	93	2	165	36	5	3	55	1.38
23831--24069	85	2.9	81	78	12	234	37	6	2	52	1.43
23771--24027	107	2.4	106	80	11	276	38	5	2	53	1.40
23783--24283	93	5.5	91	74	15	298	37	6	2	53	1.42
23855--24019	49	3.2	49	80	13	172	37	6	3	52	1.43
23977--24620	2	316.0	2	64	22	100	37	7	3	51	1.45
23760--24620	8	110.0	8	65	21	135	37	6	2	52	1.43
24342--24562	109	2.0	107	84	10	290	37	7	2	52	1.41
24342--24616	109	2.5	108	80	12	282	37	6	2	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25012--25043	16	2.0	16	100	0	64	37	12	25	25	1.91
25527--25564	11	3.5	11	89	7	51	76	0	2	21	0.91
27298--27353	23	2.4	23	91	5	87	26	7	14	51	1.67
27298--27364	23	2.9	24	84	6	68	26	7	14	50	1.70
33622--33749	66	1.9	66	88	3	195	22	23	19	34	1.97
33772--33841	31	2.3	31	84	0	86	14	25	35	24	1.93
34683--34762	22	3.8	22	80	12	87	47	3	1	47	1.28
34704--34878	20	8.9	20	69	18	98	44	4	6	45	1.49
34803--34878	11	6.7	11	73	11	64	44	2	6	46	1.43
34838--34910	21	3.3	22	84	7	67	42	5	4	47	1.45
34875--35304	15	29.4	15	66	25	151	36	6	2	53	1.41
34898--35307	7	55.1	8	70	21	124	36	7	2	54	1.41
34862--35306	144	3.2	140	82	9	450	36	6	2	53	1.42
34871--35309	122	3.5	122	71	19	289	36	7	2	53	1.41
35110--35197	40	2.3	38	82	4	104	42	3	2	52	1.31
35110--35204	38	2.5	40	81	6	117	42	3	2	52	1.29
35110--35282	32	5.2	34	70	18	98	39	4	2	53	1.37
34983--35282	139	2.2	133	82	10	340	37	5	3	54	1.40
35262--35296	17	2.1	16	89	5	52	37	2	2	57	1.29
35110--35296	2	96.0	2	68	20	67	39	4	2	53	1.36
34906--35309	22	17.9	22	70	19	207	36	6	2	54	1.41
35383--35437	22	2.6	22	88	5	78	45	3	3	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35500--35896	2	198.5	2	64	19	107	44	5	4	45	1.45
35425--35672	20	13.3	19	66	20	75	43	4	5	46	1.48
35544--35701	9	16.7	9	65	19	54	44	5	2	47	1.38
35501--35593	13	7.5	12	66	22	50	46	2	4	47	1.34
35492--35896	11	37.2	11	66	18	95	44	5	4	45	1.45
35505--35706	37	5.5	37	71	11	103	46	4	3	46	1.40
35484--35814	140	2.3	141	87	8	424	45	5	3	45	1.43
35484--35857	140	2.6	137	83	10	352	45	5	4	45	1.45
35737--35897	64	2.4	65	77	13	161	43	4	6	45	1.50
36003--36035	12	2.5	13	90	9	50	27	0	3	69	1.03
37400--37432	17	1.9	17	93	0	57	33	15	6	45	1.70
37541--37635	17	5.6	17	73	9	68	16	15	6	61	1.54
37770--37953	65	2.8	65	87	3	264	34	23	13	28	1.93
38398--38460	21	3.1	21	63	28	55	34	20	3	41	1.68
38390--38476	39	2.2	39	97	0	165	32	22	2	42	1.66
40823--40852	14	2.1	14	93	0	51	23	6	3	66	1.30
41273--41358	29	3.0	29	92	0	136	48	15	4	31	1.65
44591--44643	17	2.9	18	77	8	63	52	22	13	11	1.71
44591--44644	19	2.9	19	78	10	67	53	22	12	11	1.70
46087--46133	18	2.5	18	83	13	51	55	17	0	27	1.42
50138--50471	167	2.0	167	98	0	650	44	14	18	21	1.86
51776--52580	105	7.7	105	96	0	1459	22	18	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64104--64141	15	2.4	16	82	8	51	60	5	0	34	1.19
64220--64550	164	2.0	167	97	1	623	44	15	19	21	1.87
66383--66441	23	2.6	22	76	10	57	35	22	22	20	1.96
66855--66940	42	2.0	42	82	4	102	39	20	4	34	1.74
71566--71616	24	2.2	23	89	3	75	37	19	23	19	1.94
71618--71683	23	2.9	23	83	0	69	30	22	24	22	1.99
72426--72459	15	2.3	15	89	0	50	20	26	14	38	1.91
73531--73568	18	2.1	19	85	14	53	2	31	5	60	1.33
77609--77635	14	1.9	14	100	0	54	29	25	0	44	1.54
79825--79859	2	17.5	2	87	0	52	54	2	0	42	1.15
85085--85875	55	14.3	55	90	2	1133	34	19	11	34	1.88
90004--90175	83	2.1	82	90	5	267	20	22	17	38	1.93
90998--91042	22	2.0	22	100	0	90	37	26	8	26	1.86
93055--93095	21	2.0	21	90	4	66	26	26	19	26	1.99
98592--98633	20	2.1	20	100	0	84	4	9	23	61	1.45
99137--99174	15	2.4	16	95	4	69	52	0	0	47	1.00
112233--112271	12	3.2	13	85	10	55	43	0	10	46	1.37
113864--113908	19	2.4	19	84	0	54	40	22	0	37	1.54
115353--115411	25	2.5	24	76	17	61	11	6	1	79	0.99
115360--115411	12	4.1	12	79	13	59	9	5	1	82	0.90

Tables:   1

The End!