genome.fa.s4306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004306.1 Hibiscus syriacus cultivar Beakdansim tig00009442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61167

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3197--3340	62	2.4	61	77	9	141	22	25	27	25	2.00
8180--8437	130	2.0	130	83	3	331	31	11	18	38	1.86
8698--8747	2	25.0	2	100	0	100	50	0	0	50	1.00
9272--9309	20	1.9	19	89	5	58	34	10	28	26	1.90
9431--9490	30	2.0	30	87	6	86	40	3	6	50	1.45
12688--12723	17	2.1	17	89	0	54	41	11	11	36	1.76
22464--22529	12	5.6	12	83	3	80	12	15	46	25	1.80
22467--22529	23	2.7	24	80	5	74	12	14	46	26	1.80
22527--22606	2	43.0	2	71	14	64	52	0	0	47	1.00
34987--35334	132	2.6	132	90	0	545	39	16	11	32	1.84
38544--38761	118	1.8	118	86	1	312	30	13	21	34	1.92
40797--41140	131	2.6	131	88	1	510	39	16	11	33	1.83
40789--41136	132	2.6	132	88	1	520	39	16	10	33	1.83
44313--44528	118	1.8	118	91	0	360	26	14	24	34	1.94
46170--46508	131	2.6	131	92	0	552	38	18	10	32	1.84
46960--47096	62	2.2	61	82	7	152	61	13	9	16	1.56
47865--47904	21	1.9	21	85	10	55	45	35	7	12	1.70
48658--48712	3	18.3	3	77	7	58	61	0	7	30	1.23
50869--50916	23	2.1	23	92	0	78	35	8	18	37	1.81
51349--51803	182	2.5	181	91	2	707	27	15	13	43	1.83
51737--51933	93	2.1	93	98	0	378	22	15	14	47	1.81
51829--52032	112	1.8	113	94	1	365	24	15	13	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54808--54833	12	2.2	12	100	0	52	76	7	0	15	0.99
54817--54863	20	2.4	19	79	10	58	63	2	0	34	1.06
56977--57131	74	2.1	74	98	0	301	34	25	16	23	1.95
60004--60068	3	23.0	3	84	12	93	66	0	0	33	0.92
60250--60919	120	5.6	123	84	7	788	27	19	14	38	1.90
60247--60912	238	2.8	240	82	7	784	27	19	14	39	1.90

Tables:   1

The End!