genome.fa.s4307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004307.1 Hibiscus syriacus cultivar Beakdansim tig00009444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76284

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1324--1435	43	2.6	42	84	2	134	19	16	42	20	1.89
1371--1431	21	2.9	21	73	9	70	21	13	42	22	1.87
1342--1435	42	2.2	43	86	1	136	20	14	43	21	1.87
1762--1833	20	3.6	19	86	3	63	36	26	16	20	1.94
1767--1852	40	2.2	40	82	4	102	36	25	20	17	1.95
1787--1862	20	3.8	20	89	1	109	35	22	25	17	1.95
1798--1873	40	1.9	40	83	2	100	39	22	22	15	1.92
1846--1934	33	2.7	33	92	0	151	50	21	15	12	1.77
1862--1926	14	4.4	14	75	19	60	52	23	13	10	1.72
1876--1933	19	3.3	18	70	22	52	51	20	15	12	1.75
2484--2530	18	2.7	18	90	3	78	14	12	44	27	1.82
3823--3881	20	3.0	20	84	0	64	44	20	18	16	1.87
4374--4487	20	5.7	20	78	10	106	23	17	25	33	1.96
4354--4488	20	6.7	19	73	13	83	23	17	24	34	1.95
4354--4489	41	3.3	41	83	10	188	23	16	24	35	1.95
4414--4509	41	2.3	41	85	7	115	21	18	22	36	1.95
4515--4545	15	2.1	15	93	0	53	22	19	22	35	1.96
4533--4585	21	2.5	22	81	6	74	33	18	26	20	1.96
21544--21646	42	2.5	42	81	0	125	33	23	17	25	1.96
21551--21630	21	3.8	21	74	0	88	37	20	17	25	1.94
22343--22413	36	2.0	35	84	13	92	28	26	15	29	1.96
39076--39117	13	3.3	13	86	6	68	16	21	45	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39096--39149	18	3.0	18	94	0	99	16	16	48	18	1.82
39080--39116	12	2.9	13	88	8	58	18	18	45	16	1.85
39166--39207	11	4.1	11	82	17	63	35	26	19	19	1.95
39169--39207	19	2.0	20	95	5	71	35	25	20	17	1.95
46359--46389	7	4.4	7	100	0	62	25	29	32	12	1.93
46381--46422	13	3.3	13	80	6	59	16	21	42	19	1.89
46403--46454	18	2.9	18	94	0	95	17	17	46	19	1.85
46457--46511	10	5.6	10	81	10	69	34	27	21	16	1.95
46457--46512	19	2.9	19	82	10	69	33	26	21	17	1.96
51524--51581	22	2.6	21	81	10	71	27	3	1	67	1.17
51544--51592	22	2.3	22	80	13	57	32	2	2	63	1.17
56447--56635	99	1.9	99	87	2	281	33	17	17	30	1.94
57678--57726	13	3.8	13	83	0	71	28	16	18	36	1.92
62339--62401	33	1.9	33	83	0	81	26	14	25	33	1.94
63478--64269	62	13.0	62	84	6	882	27	23	16	32	1.96
64278--65078	89	9.0	89	81	2	847	32	16	21	29	1.95
64598--65021	42	9.6	42	65	22	149	33	17	21	28	1.96
65084--65434	82	4.3	82	80	2	330	38	21	15	24	1.92
65564--65592	3	9.7	3	100	0	58	34	0	0	65	0.93
66724--66754	15	2.1	15	93	0	53	29	0	0	70	0.87
69073--69105	9	3.8	9	84	8	50	51	0	0	48	1.00
69397--69432	18	1.9	19	88	5	56	63	11	5	19	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73420--73455	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1

The End!