Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004308.1 Hibiscus syriacus cultivar Beakdansim tig00009446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56126

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1462--1657
92
2.1
92
91
1
322
27
12
11
48
1.75
1402--1769
204
1.8
204
89
2
578
28
13
12
45
1.80
1554--1837
112
2.5
111
89
1
424
27
11
12
48
1.76
1928--2184
74
3.5
74
87
3
358
34
13
14
38
1.84
3740--3795
16
3.4
16
83
9
76
39
7
25
28
1.82
4374--4473
28
3.4
28
87
6
137
44
33
9
14
1.76
8803--8842
14
2.7
16
77
18
50
72
5
0
22
1.04
9496--9530
3
11.3
3
93
6
61
31
0
0
68
0.90
17640--17678
14
2.7
15
84
8
53
12
12
58
15
1.62
23633--23736
51
2.0
51
83
5
127
31
17
5
45
1.72
23842--23963
40
3.0
40
100
0
244
32
27
17
22
1.96
31169--31282
51
2.2
51
93
0
192
53
14
6
25
1.64
36230--36275
2
23.0
2
100
0
92
50
0
0
50
1.00
42114--42163
25
2.0
25
100
0
100
36
24
4
36
1.74
43811--43835
2
12.5
2
100
0
50
48
0
0
52
1.00
44836--45004
2
87.0
2
69
22
94
42
0
5
50
1.31
44882--45002
36
3.4
37
74
19
105
42
0
5
52
1.25
46586--46678
14
6.7
14
72
20
70
40
0
3
55
1.16
46597--46743
7
19.1
8
69
20
75
40
0
5
53
1.24
46599--46748
25
6.0
24
73
17
112
40
0
5
54
1.23
46597--46711
42
2.7
42
78
12
121
42
0
3
53
1.17
46586--46746
29
5.7
29
74
14
124
40
0
4
54
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46587--46718
64
2.1
64
82
13
157
41
0
3
54
1.18
46620--46711
13
6.6
14
74
16
66
42
0
2
55
1.12
46605--46735
20
6.4
21
72
22
57
40
0
6
53
1.26
47137--47212
38
2.0
38
94
0
134
23
15
23
36
1.94

Tables:   1

The End!