Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000431.1 Hibiscus syriacus cultivar Beakdansim tig00000790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66465

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2221--2263
19
2.2
19
83
4
50
16
0
16
67
1.24
4107--4150
20
2.2
20
88
4
63
36
4
4
54
1.41
6619--6783
64
2.6
65
81
10
187
29
18
23
28
1.98
7418--7463
23
2.0
23
100
0
92
52
26
4
17
1.63
9403--9484
23
3.7
23
78
6
105
26
23
25
24
2.00
15331--15454
64
1.9
64
80
9
146
30
16
20
31
1.95
16809--16838
12
2.6
12
94
5
53
26
6
0
66
1.16
17706--17772
7
9.4
7
75
14
57
77
1
17
2
0.97
17706--17772
21
3.2
20
81
10
71
77
1
17
2
0.97
17711--17782
35
2.1
33
87
10
101
79
0
18
2
0.86
17717--17782
9
7.4
9
73
20
59
78
0
18
3
0.87
21325--21655
104
3.2
104
83
2
378
36
22
13
26
1.92
25487--25525
18
2.2
18
85
0
51
69
2
12
15
1.30
26443--26506
19
3.4
19
75
16
60
21
28
23
26
1.99
26527--26781
138
1.9
137
84
5
345
30
20
14
35
1.92
30480--30661
71
2.5
72
88
1
267
39
15
12
32
1.85
30742--30766
12
2.1
12
100
0
50
36
8
8
48
1.62
31840--32000
75
2.2
73
86
4
216
40
11
14
32
1.83
32042--32647
199
3.0
198
85
2
793
39
14
11
34
1.81
32708--33185
226
2.1
226
83
3
588
33
12
12
41
1.80
32779--33284
226
2.2
227
81
5
569
34
11
12
41
1.78
33983--34060
33
2.4
33
85
8
97
38
0
1
60
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34200--34253
17
3.2
17
72
0
54
31
0
3
64
1.11
35784--35831
21
2.3
21
85
0
60
25
39
12
22
1.89
35835--35928
21
4.5
21
93
5
138
18
35
25
21
1.95
36452--36535
39
2.1
39
91
2
132
58
3
1
36
1.23
36480--36554
33
2.2
34
85
2
98
58
2
1
37
1.20
36955--38215
128
9.9
128
94
1
2218
31
20
24
22
1.98
36955--38206
253
4.9
256
96
1
2299
31
20
25
22
1.98
42352--42460
56
1.9
56
98
0
209
46
9
8
35
1.66
45301--45379
32
2.5
32
83
8
90
65
5
7
21
1.37
46952--46986
2
17.5
2
88
11
54
48
2
48
0
1.16
52003--52036
16
2.1
16
88
0
50
50
0
2
47
1.16
52078--52111
16
2.0
18
88
11
54
26
2
5
64
1.30
52304--52367
24
2.6
25
92
5
112
46
3
3
46
1.34
52607--52853
130
1.9
129
92
0
413
35
12
15
36
1.85
53250--53325
35
2.2
35
92
0
125
35
1
23
39
1.63
57724--57773
24
2.0
25
88
3
75
38
16
14
32
1.88
64688--64811
21
5.8
21
73
9
79
36
25
14
24
1.93
66035--66138
52
2.0
52
98
0
199
40
22
9
27
1.85
66220--66248
7
4.1
7
100
0
58
0
44
0
55
0.99

Tables:   1

The End!