Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004310.1 Hibiscus syriacus cultivar Beakdansim tig00009454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82949

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
974--1012
20
2.0
20
94
0
69
35
5
17
41
1.72
1026--1063
19
2.0
20
89
5
60
39
5
13
42
1.66
973--1119
51
2.9
51
90
7
244
33
5
12
48
1.65
1076--1115
20
2.0
20
95
0
71
37
5
12
45
1.64
5665--5703
20
2.0
20
94
0
69
35
5
17
41
1.72
5717--5754
19
2.0
20
85
15
53
36
5
13
44
1.66
5664--5813
52
2.9
52
94
4
266
32
6
13
48
1.67
5769--5809
20
2.0
21
90
4
66
36
4
14
43
1.67
10551--10606
25
2.2
25
87
0
76
25
16
12
46
1.81
13112--13343
73
3.2
73
93
0
383
23
17
27
31
1.97
13359--13687
93
3.6
91
78
5
304
26
18
20
35
1.95
18805--19418
153
4.0
152
83
1
651
34
24
24
16
1.95
20420--20461
21
2.0
21
90
0
66
19
9
14
57
1.64
21229--21286
28
2.0
29
90
3
91
60
5
1
32
1.29
23641--23698
18
3.2
18
90
0
89
27
3
22
46
1.68
23914--23970
29
2.0
28
86
3
78
29
0
10
59
1.31
25699--25742
23
1.9
23
81
9
54
43
15
2
38
1.60
30693--30718
10
2.6
10
100
0
52
30
0
0
69
0.89
37735--37766
14
2.2
15
94
5
57
37
6
15
40
1.73
40084--40115
12
2.8
12
95
4
57
46
15
0
37
1.46
43960--44043
32
2.7
31
82
12
109
17
16
10
54
1.70
45355--45402
13
4.0
12
86
13
55
62
0
4
33
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45364--45399
16
2.4
14
90
9
54
63
0
2
33
1.08
53261--53320
31
2.0
31
86
3
86
28
10
10
51
1.67
54944--54987
22
2.0
22
82
8
54
56
11
2
29
1.46
55960--56036
36
2.1
36
85
4
100
49
1
3
45
1.28
56175--56217
20
2.3
19
88
8
61
23
18
9
48
1.76
58222--58259
20
2.0
19
85
10
51
50
10
21
18
1.76
64979--65007
2
14.5
2
100
0
58
48
0
0
51
1.00
67568--67610
19
2.3
19
95
0
77
25
25
9
39
1.85
73944--74048
32
3.3
32
75
6
97
22
15
27
34
1.94
75857--75918
3
20.7
3
100
0
124
33
0
66
0
0.92
79697--80035
169
2.0
168
96
0
624
34
13
18
33
1.90
80201--80334
28
4.8
28
86
2
189
44
15
3
35
1.65
80201--80334
55
2.4
56
88
2
189
44
15
3
35
1.65

Tables:   1

The End!