Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004311.1 Hibiscus syriacus cultivar Beakdansim tig00009455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91106

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7336--7457
35
3.4
35
85
2
154
42
22
0
34
1.59
7453--7527
35
2.1
35
82
4
89
34
0
21
44
1.53
10805--10868
29
2.2
28
81
10
76
39
20
15
25
1.92
14677--14740
23
2.8
24
80
7
78
28
10
14
46
1.77
32185--32262
35
2.2
35
97
0
147
42
10
25
21
1.84
32703--32815
59
1.9
59
83
5
138
40
12
14
32
1.83
40854--40905
23
2.3
23
100
0
104
40
7
15
36
1.76
40902--40934
13
2.4
14
90
5
50
30
6
9
54
1.56
47148--47181
13
2.6
13
100
0
68
23
8
0
67
1.18
51801--51913
60
1.9
60
88
3
174
32
15
17
34
1.91
52726--52785
9
6.4
9
86
11
68
75
8
1
15
1.12
52726--52785
19
3.2
19
85
4
77
75
8
1
15
1.12
53021--53110
43
2.1
43
93
0
153
28
22
27
21
1.99
53031--53122
43
2.1
43
89
0
139
28
20
28
22
1.99
55897--55972
37
2.1
37
94
0
134
53
7
19
18
1.68
64294--64343
23
2.2
21
83
13
64
6
26
0
68
1.13
64295--64346
22
2.2
24
90
6
81
5
25
0
69
1.10
75375--75405
16
1.9
16
93
0
53
35
3
0
61
1.12
81951--81993
22
2.0
22
81
9
52
48
0
4
46
1.22
88337--88365
15
1.9
15
100
0
58
51
6
13
27
1.66
88718--88858
24
5.6
23
70
23
81
51
2
0
45
1.18
88713--88781
30
2.3
32
78
19
85
57
1
0
40
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88745--88865
46
2.7
45
81
12
133
51
1
0
46
1.16
89056--89170
42
2.7
42
93
0
185
48
19
14
17
1.81
89988--90043
24
2.3
23
84
3
67
46
1
3
48
1.30

Tables:   1

The End!