Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004313.1 Hibiscus syriacus cultivar Beakdansim tig00009458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72453

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3127--3158
15
2.1
15
94
0
55
46
9
18
25
1.79
5880--5904
9
2.8
9
100
0
50
52
0
0
48
1.00
6410--6455
24
2.0
23
86
4
65
58
2
2
36
1.22
7124--7168
2
23.0
2
88
4
65
44
0
2
53
1.13
8441--8484
3
14.0
3
81
9
52
61
0
0
38
0.96
14177--14201
13
1.9
13
100
0
50
0
24
20
56
1.43
14678--14736
3
19.7
3
100
0
118
66
0
0
33
0.92
20762--20818
28
2.0
28
83
6
71
29
15
15
38
1.89
22475--22523
25
2.0
25
87
0
71
38
6
18
36
1.76
22569--22665
50
1.9
50
93
0
167
50
3
8
38
1.48
22708--22788
27
2.9
27
80
12
76
56
2
4
35
1.34
26586--26654
34
2.1
34
88
2
104
40
2
21
34
1.68
26670--26761
35
2.8
33
85
10
127
44
1
6
47
1.36
36488--36563
31
2.4
31
77
2
80
15
26
30
27
1.96
37332--37359
6
4.7
6
100
0
56
35
0
0
64
0.94
37575--37611
19
1.9
19
94
0
65
62
0
8
29
1.24
39676--39915
117
2.1
117
99
0
471
32
10
27
28
1.90
41244--41285
22
2.0
22
90
4
68
23
35
0
40
1.55
42616--42672
30
2.0
28
86
6
78
33
22
0
43
1.54
47179--47255
31
2.5
31
80
2
91
27
31
27
14
1.95
47132--47255
63
2.0
63
82
6
153
25
29
28
16
1.97
48125--48155
7
4.4
7
100
0
62
25
29
29
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48163--48280
9
12.3
9
79
10
110
28
29
27
13
1.94
48163--48260
19
5.2
18
81
15
117
27
31
28
12
1.93
48163--48280
38
3.1
38
84
11
136
28
29
27
13
1.94
48163--48260
29
3.4
28
78
13
94
27
31
28
12
1.93
54522--54598
31
2.5
31
80
2
91
27
31
27
14
1.95
54475--54598
63
2.0
63
82
6
153
25
29
28
16
1.97
55468--55498
7
4.4
7
100
0
62
25
29
29
16
1.96
55488--55552
22
3.0
22
97
0
121
10
23
47
18
1.79
55495--55535
5
7.8
5
84
10
55
4
21
53
19
1.63
55549--55646
19
5.2
18
81
15
117
27
30
28
13
1.94
55549--55666
38
3.1
38
83
11
127
28
28
27
14
1.95
55549--55666
29
4.1
28
81
12
116
28
28
27
14
1.95
55549--55666
9
12.3
9
80
10
110
28
28
27
14
1.95
65351--65382
2
16.0
2
100
0
64
0
50
0
50
1.00

Tables:   1

The End!