genome.fa.s4314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004314.1 Hibiscus syriacus cultivar Beakdansim tig00009459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  202148

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163--216	27	2.0	28	88	3	83	55	16	14	12	1.69
2883--3009	65	2.0	65	98	0	245	42	22	14	20	1.88
3411--3479	19	3.5	19	69	13	50	27	1	2	68	1.13
3394--3482	40	2.2	40	84	11	112	31	1	3	64	1.17
3613--3674	21	2.8	20	83	11	61	17	6	6	69	1.32
3637--3708	33	2.1	35	82	10	87	16	6	2	73	1.17
8685--8893	72	2.9	71	83	6	242	28	17	14	39	1.89
8863--8911	21	2.3	21	96	0	89	24	18	10	46	1.79
8944--9063	63	1.9	63	86	6	172	31	17	11	39	1.86
9051--9170	36	3.4	36	76	4	127	24	21	12	41	1.87
10369--10455	40	2.2	39	82	12	97	29	3	3	63	1.27
24676--24716	19	2.2	19	100	0	82	43	12	9	34	1.75
32669--32755	35	2.5	34	80	12	97	55	10	6	27	1.59
32750--32832	32	2.5	31	83	11	94	63	15	0	20	1.30
32771--32832	32	1.9	33	90	9	101	66	14	0	19	1.26
32848--32873	11	2.4	11	100	0	52	76	0	0	23	0.78
36901--36939	19	2.0	18	85	14	51	38	10	10	41	1.73
37034--37069	18	2.1	17	89	5	54	38	0	2	58	1.13
37851--37894	23	1.9	23	90	0	70	47	11	11	29	1.74
38107--40531	182	13.4	182	90	3	3707	27	16	13	41	1.86
38107--40531	905	2.7	905	94	1	4082	27	16	13	41	1.86
38107--40531	362	6.7	362	91	2	3677	27	16	13	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40842--41026	31	5.8	30	73	20	135	50	3	4	42	1.38
40905--40966	14	4.4	14	76	15	56	45	1	6	46	1.38
40932--41020	15	5.6	15	69	19	56	50	3	3	42	1.35
40813--41020	65	3.2	64	81	13	228	49	2	4	43	1.37
41009--41111	22	4.8	22	75	11	88	48	8	5	36	1.58
41038--41090	21	2.5	21	87	0	79	47	5	7	39	1.56
41036--41127	21	4.3	20	72	14	78	47	7	6	38	1.58
41202--41241	15	2.6	15	88	4	53	42	5	7	45	1.54
41214--41257	20	2.2	20	88	4	63	40	9	4	45	1.56
41397--41581	31	5.8	30	73	20	126	51	3	4	41	1.38
41460--41521	14	4.4	14	76	15	56	45	1	6	46	1.38
41409--41616	66	3.2	64	78	15	212	49	3	4	41	1.42
41487--41575	15	5.6	15	69	19	56	50	3	3	42	1.35
41375--41616	131	1.8	131	81	8	305	49	3	4	42	1.41
41564--41604	22	2.0	21	86	13	59	48	9	4	36	1.58
41592--41651	21	2.8	21	85	7	68	48	5	5	41	1.47
41606--41651	14	3.3	14	81	0	56	50	4	4	41	1.42
41671--41700	13	2.3	13	94	0	51	40	6	10	43	1.64
41656--41771	60	1.9	60	92	0	196	40	12	7	39	1.71
41805--41839	7	5.0	7	92	0	52	20	0	37	42	1.52
41901--42049	2	75.5	2	65	19	55	44	5	2	46	1.40
41903--42064	15	10.3	15	65	17	55	45	4	2	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41894--42108	86	2.5	86	85	8	251	44	5	2	47	1.41
41959--42078	15	8.4	14	69	21	54	45	4	1	48	1.31
42219--42281	26	2.4	28	74	15	71	39	4	6	49	1.49
42445--42588	2	73.5	2	74	11	120	47	4	2	45	1.33
42469--42517	15	3.3	15	86	8	64	44	4	4	46	1.41
42772--42833	19	3.3	19	81	6	81	27	30	0	41	1.56
42962--43028	13	5.0	13	87	3	80	38	7	5	47	1.56
43061--43098	18	2.1	18	95	5	67	50	0	5	44	1.24
43061--43115	19	2.9	19	87	12	71	47	1	3	47	1.30
53375--53405	4	7.8	4	100	0	62	22	0	0	77	0.77
54934--54972	18	2.2	18	100	0	78	38	20	0	41	1.53
60282--60392	55	2.0	55	87	0	159	52	7	15	25	1.68
64134--64181	21	2.3	21	96	0	87	16	20	33	29	1.95
68595--68628	16	2.1	17	88	5	52	44	17	0	38	1.49
69271--69377	23	4.7	23	95	2	180	28	25	24	22	2.00
70556--70580	13	1.9	13	100	0	50	44	16	0	40	1.47
77525--77575	27	2.1	24	82	17	61	33	9	13	43	1.77
93735--93796	23	2.7	23	97	0	115	19	24	33	22	1.97
103750--103797	17	2.8	17	84	9	53	60	0	0	39	0.97
105102--105150	20	2.3	21	75	6	55	48	4	12	34	1.59
109589--109627	20	1.9	21	84	5	53	53	0	2	43	1.14
114845--114879	18	1.9	18	88	0	52	57	22	14	5	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114907--114965	20	3.0	19	82	7	73	62	18	6	11	1.50
114854--114963	57	2.0	54	81	12	125	61	18	8	11	1.54
115297--115403	14	7.6	14	88	8	155	57	16	14	10	1.64
115377--115440	24	2.7	24	85	0	83	56	15	12	15	1.68
119148--119181	16	2.1	16	88	0	50	38	0	0	61	0.96
119214--119239	2	13.0	2	100	0	52	50	0	0	50	1.00
123417--123602	102	1.8	102	82	9	245	25	18	26	29	1.98
123434--123631	102	1.9	102	79	9	217	27	18	24	29	1.98
124876--124920	23	2.0	23	90	0	72	20	13	13	53	1.72
126441--126465	2	12.5	2	100	0	50	48	0	0	52	1.00
127666--127731	23	2.9	22	75	4	69	60	3	3	33	1.27
130505--130742	93	2.6	93	86	2	309	27	16	23	32	1.96
130784--131172	38	10.5	36	69	9	194	40	11	16	32	1.83
130795--131337	74	7.2	74	74	8	360	38	12	16	32	1.86
130793--131156	149	2.4	149	79	8	434	39	11	16	32	1.84
131166--131260	48	2.0	48	85	0	127	36	13	15	33	1.87
131131--131459	122	2.7	121	91	2	507	38	13	16	32	1.87
131344--131586	36	6.6	37	71	12	167	36	12	17	33	1.88
131344--131584	74	3.2	73	82	2	293	36	12	17	33	1.87
138337--138392	20	2.7	21	78	10	62	32	16	16	35	1.90
142733--142800	13	4.9	14	73	18	54	45	14	25	14	1.83
147855--147885	10	3.1	10	100	0	62	19	9	29	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149274--149343	16	4.4	16	74	3	70	24	21	11	42	1.85
149274--149343	31	2.2	32	89	2	106	24	21	11	42	1.85
149589--149638	23	2.1	24	92	3	84	46	0	4	50	1.20
150168--150219	20	2.8	20	80	8	65	42	25	28	3	1.72
150168--150229	20	3.3	18	76	14	63	38	25	30	4	1.77
152702--152749	18	2.7	18	90	0	78	50	10	10	29	1.70
152726--153104	120	3.2	120	93	0	641	49	20	10	18	1.76
153428--153503	36	2.1	36	85	4	100	6	11	40	40	1.68
153428--153514	18	4.8	17	76	8	66	8	10	37	43	1.68
153915--153959	22	2.0	21	83	8	54	40	4	22	33	1.74
154250--154327	14	5.4	14	74	20	54	47	1	0	51	1.09
154262--154333	28	2.5	30	84	11	96	51	1	0	47	1.09
154271--154358	44	2.0	45	82	10	110	48	0	2	48	1.13
154422--154482	14	4.3	14	74	12	52	45	3	6	44	1.46
154391--154506	43	2.8	40	82	13	139	44	3	6	45	1.45
154578--154629	20	2.4	20	81	12	59	46	5	7	40	1.57
154755--154833	16	4.7	15	72	23	61	39	12	6	41	1.69
154793--154833	17	2.6	15	85	11	55	39	14	4	41	1.67
154757--154841	26	3.3	26	63	18	68	38	12	7	41	1.71
154757--154860	52	2.0	52	96	0	190	37	12	8	41	1.74
154829--154889	16	3.5	16	70	20	50	39	11	9	39	1.75
155090--155209	2	63.0	2	68	21	71	45	5	1	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155257--155291	13	2.5	14	90	9	54	37	2	8	51	1.47
155308--155362	18	3.1	18	80	14	60	49	1	5	43	1.36
155330--155363	18	1.9	18	94	5	61	52	0	5	41	1.25
157411--157440	12	2.5	12	94	0	51	46	23	3	26	1.68
161202--161240	13	3.0	13	88	0	60	23	17	20	38	1.93
161212--161377	85	2.0	84	82	9	203	31	19	17	31	1.95
167003--167061	23	2.6	23	97	0	109	27	27	27	18	1.98
176370--176408	19	2.1	19	85	0	51	53	2	7	35	1.43
185368--185403	2	18.5	2	94	5	65	50	0	0	50	1.00
190008--190101	36	2.6	36	98	0	179	41	21	18	19	1.90

Tables:   1

The End!