Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004316.1 Hibiscus syriacus cultivar Beakdansim tig00009467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93393

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--82
30
2.7
31
92
3
139
37
21
19
20
1.94
2089--2121
13
2.4
14
85
5
50
72
6
0
21
1.05
5615--5665
2
25.5
2
100
0
102
50
0
0
49
1.00
6413--6444
15
2.1
15
100
0
64
56
0
12
31
1.37
13372--13445
31
2.6
29
85
8
98
29
17
20
32
1.95
16860--16891
2
16.0
2
93
0
55
50
3
0
46
1.17
22314--22359
20
2.3
20
85
7
58
50
0
0
50
1.00
22440--22494
20
2.8
20
97
0
101
36
0
12
50
1.41
22440--22501
20
3.0
22
90
7
78
38
0
11
50
1.39
24037--24196
41
3.9
41
94
3
286
31
7
20
40
1.80
38063--38149
31
2.9
28
72
23
70
48
5
4
41
1.48
39228--39325
38
2.6
37
80
7
99
41
10
18
29
1.83
39935--39986
15
3.5
15
97
0
95
9
69
15
5
1.35
41339--41363
3
8.3
3
100
0
50
36
0
0
64
0.94
41948--41996
22
2.2
21
82
7
53
51
2
2
44
1.24
42332--42424
40
2.6
33
76
20
105
26
50
13
8
1.71
42342--42427
40
2.2
40
97
0
163
29
51
12
6
1.66
42410--42443
16
2.1
16
94
0
59
26
52
11
8
1.67
42455--42500
23
2.0
23
95
0
83
21
43
15
19
1.87
42455--42565
29
4.0
29
81
6
108
22
39
20
17
1.92
44785--44809
2
12.5
2
100
0
50
52
0
0
48
1.00
45610--45655
22
2.0
23
83
4
58
41
6
10
41
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45711--45836
61
2.1
62
96
3
238
29
8
7
53
1.60
51651--51675
5
5.0
5
100
0
50
80
0
0
20
0.72
67152--67257
51
2.1
51
83
3
133
41
3
23
31
1.72
78976--79141
84
2.0
81
89
3
251
38
25
12
22
1.90
81433--81543
55
2.0
55
91
0
177
36
18
18
26
1.95
83278--83367
32
2.8
31
78
5
99
40
11
8
40
1.72
83278--83397
64
1.9
63
82
1
150
42
11
6
39
1.68
83600--83729
65
2.0
66
92
4
219
47
5
3
43
1.44
83756--83805
24
2.1
24
85
3
66
62
12
4
22
1.46
87645--87721
38
2.0
38
87
0
109
33
11
29
24
1.91

Tables:   1

The End!